Wall clock time and date at job start Sun Mar 29 2020 22:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37094 * 120.00133 * 2 1 4 4 H 1.07998 * 120.00377 * 188.91879 * 3 2 1 5 5 C 1.38953 * 120.00197 * 8.91242 * 3 2 1 6 6 N 1.31416 * 119.99704 * 9.67241 * 5 3 2 7 7 Si 1.86792 * 120.00330 * 189.67347 * 5 3 2 8 8 H 1.48503 * 109.47182 * 60.00321 * 7 5 3 9 9 H 1.48506 * 109.47541 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47333 * 300.00048 * 7 5 3 11 11 C 1.34776 * 120.00061 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.00274 * 186.04555 * 11 2 1 13 13 C 1.50703 * 119.99774 * 6.04549 * 11 2 1 14 14 N 1.46895 * 110.28637 * 44.78778 * 13 11 2 15 15 C 1.54261 * 110.32511 * 282.65266 * 13 11 2 16 16 C 1.54375 * 105.06410 * 241.10538 * 15 13 11 17 17 N 1.48562 * 104.59198 * 23.85664 * 16 15 13 18 18 C 1.48566 * 104.22197 * 320.51491 * 17 16 15 19 19 H 1.08993 * 109.46799 * 174.96966 * 1 2 3 20 20 H 1.09000 * 109.47105 * 294.97063 * 1 2 3 21 21 H 1.08996 * 109.46598 * 54.97166 * 1 2 3 22 22 H 0.96999 * 120.00244 * 180.02562 * 6 5 3 23 23 H 1.00897 * 111.00268 * 64.07924 * 14 13 11 24 24 H 1.00904 * 110.99767 * 188.03682 * 14 13 11 25 25 H 1.09000 * 110.32317 * 0.02562 * 15 13 11 26 26 H 1.08996 * 110.31749 * 122.20735 * 15 13 11 27 27 H 1.08993 * 110.41065 * 142.63351 * 16 15 13 28 28 H 1.09003 * 110.41150 * 264.96035 * 16 15 13 29 29 H 1.00907 * 110.99730 * 200.96118 * 17 16 15 30 30 H 1.09000 * 110.41086 * 280.70433 * 18 17 16 31 31 H 1.08998 * 110.40831 * 158.26382 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2207 1.1930 -0.1450 5 6 1.4684 2.3834 0.1864 6 7 0.2057 2.3699 0.5504 7 14 2.3461 4.0105 -0.0803 8 1 2.8297 4.0882 -1.4823 9 1 1.4051 5.1293 0.1807 10 1 3.5013 4.1079 0.8479 11 6 2.1389 -1.1672 0.0005 12 8 3.3468 -1.1701 0.1111 13 6 1.3917 -2.4687 -0.1364 14 7 0.3832 -2.3676 -1.1996 15 6 0.7236 -2.8463 1.2018 16 6 1.3582 -4.1960 1.6003 17 7 2.6659 -4.2173 0.8956 18 6 2.3738 -3.6221 -0.4339 19 1 -0.3633 -1.0237 -0.0901 20 1 -0.3633 0.4338 0.9316 21 1 -0.3632 0.5899 -0.8415 22 1 -0.2706 3.2048 0.6802 23 1 0.8183 -2.2210 -2.0980 24 1 -0.2101 -3.1837 -1.2140 25 1 0.9358 -2.0900 1.9576 26 1 -0.3525 -2.9583 1.0693 27 1 1.5069 -4.2424 2.6790 28 1 0.7316 -5.0236 1.2678 29 1 3.0105 -5.1610 0.8014 30 1 1.9072 -4.3599 -1.0865 31 1 3.2872 -3.2364 -0.8866 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160584586.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:05 Heat of formation + Delta-G solvation = -28.203084 kcal Electronic energy + Delta-G solvation = -15142.500146 eV Core-core repulsion = 12651.705237 eV Total energy + Delta-G solvation = -2490.794909 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.19816 -38.54653 -36.57333 -34.59425 -33.17201 -30.44681 -28.39652 -27.98801 -26.25106 -23.32422 -22.34937 -19.93674 -18.83744 -18.06157 -17.63214 -16.91198 -16.04992 -15.91207 -15.45719 -15.30474 -14.70834 -14.18218 -13.91944 -13.73723 -13.46249 -13.02303 -12.81427 -12.52722 -12.48764 -12.41415 -12.14039 -12.12863 -11.88589 -11.00357 -10.28757 -9.73676 -9.60902 -9.37954 -8.12524 -5.86909 1.37739 1.38365 1.49970 2.05858 2.27873 3.10907 3.13918 3.23831 3.63670 3.68828 3.91968 4.11038 4.25393 4.41128 4.59352 4.81803 4.88193 4.97413 5.13836 5.22484 5.41992 5.50347 5.67452 5.75589 6.05818 6.13512 6.49498 6.55501 6.62450 7.23771 7.63043 8.16303 8.71173 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052013 B = 0.009504 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.198506 B = 2945.517910 C = 3141.242930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.447 5.447 3 C -0.346 4.346 4 H 0.069 0.931 5 C -0.007 4.007 6 N -0.893 5.893 7 Si 0.991 3.009 8 H -0.270 1.270 9 H -0.267 1.267 10 H -0.276 1.276 11 C 0.441 3.559 12 O -0.637 6.637 13 C 0.116 3.884 14 N -0.817 5.817 15 C -0.110 4.110 16 C 0.042 3.958 17 N -0.678 5.678 18 C 0.033 3.967 19 H 0.112 0.888 20 H 0.042 0.958 21 H 0.022 0.978 22 H 0.269 0.731 23 H 0.347 0.653 24 H 0.360 0.640 25 H 0.042 0.958 26 H 0.108 0.892 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.348 0.652 30 H 0.074 0.926 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 -11.697 -1.940 12.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.164 5.164 3 C -0.475 4.475 4 H 0.087 0.913 5 C -0.208 4.208 6 N -0.532 5.532 7 Si 0.814 3.186 8 H -0.196 1.196 9 H -0.191 1.191 10 H -0.202 1.202 11 C 0.229 3.771 12 O -0.525 6.525 13 C 0.019 3.981 14 N -0.351 5.351 15 C -0.149 4.149 16 C -0.087 4.087 17 N -0.309 5.309 18 C -0.099 4.099 19 H 0.130 0.870 20 H 0.060 0.940 21 H 0.041 0.959 22 H 0.079 0.921 23 H 0.162 0.838 24 H 0.176 0.824 25 H 0.061 0.939 26 H 0.126 0.874 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.164 0.836 30 H 0.092 0.908 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.336 -10.287 -1.125 11.219 hybrid contribution 0.546 -0.277 -0.863 1.058 sum -3.790 -10.564 -1.988 11.398 Atomic orbital electron populations 1.22040 0.78285 1.01985 1.00322 1.43824 1.07459 1.04108 1.60982 1.19721 0.93461 0.84754 1.49525 0.91251 1.26083 0.96794 1.02320 0.95616 1.70282 1.09981 1.28183 1.44804 0.85051 0.77855 0.76865 0.78826 1.19562 1.19116 1.20174 1.20521 0.87307 0.85723 0.83515 1.90471 1.16602 1.87436 1.58003 1.21371 0.91060 0.91298 0.94346 1.58957 1.22479 1.46318 1.07389 1.22431 1.01087 0.97378 0.94028 1.22975 0.89630 0.96009 1.00101 1.63534 1.26646 1.25425 1.15303 1.23404 0.99176 0.95347 0.91960 0.87017 0.93969 0.95895 0.92067 0.83835 0.82375 0.93898 0.87360 0.89841 0.90577 0.83553 0.90815 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.65 8.03 127.77 1.03 6.67 16 2 N -0.45 -24.66 3.03 -658.90 -1.99 -26.66 16 3 C -0.35 -21.02 9.51 84.04 0.80 -20.22 16 4 H 0.07 4.50 7.25 -2.91 -0.02 4.48 16 5 C -0.01 -0.40 5.36 84.93 0.46 0.05 16 6 N -0.89 -49.57 9.77 21.66 0.21 -49.36 16 7 Si 0.99 44.77 29.56 68.60 2.03 46.79 16 8 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 9 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 C 0.44 22.79 6.40 87.66 0.56 23.35 16 12 O -0.64 -38.47 15.24 -3.06 -0.05 -38.51 16 13 C 0.12 4.15 0.75 3.68 0.00 4.15 16 14 N -0.82 -23.19 5.97 -150.98 -0.90 -24.09 16 15 C -0.11 -3.47 5.30 31.49 0.17 -3.30 16 16 C 0.04 1.05 7.47 86.45 0.65 1.69 16 17 N -0.68 -20.34 7.62 -500.85 -3.82 -24.16 16 18 C 0.03 1.05 6.41 86.45 0.55 1.60 16 19 H 0.11 4.45 3.82 -2.39 -0.01 4.44 16 20 H 0.04 2.22 6.58 -2.39 -0.02 2.21 16 21 H 0.02 1.15 7.62 -2.39 -0.02 1.13 16 22 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 23 H 0.35 9.81 9.03 -89.70 -0.81 9.00 16 24 H 0.36 7.10 8.85 -89.69 -0.79 6.30 16 25 H 0.04 1.68 7.70 -2.39 -0.02 1.66 16 26 H 0.11 2.71 7.70 -2.39 -0.02 2.69 16 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.35 7.99 8.92 -89.69 -0.80 7.19 16 30 H 0.07 1.70 8.06 -2.39 -0.02 1.68 16 31 H 0.06 2.30 7.11 -2.39 -0.02 2.28 16 Total: -1.00 -74.41 248.99 -1.54 -75.95 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -1.23 Total: 26.03 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 4.21 Total: 14.00 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -6.50 Total: -124.27 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.05 Total: -38.51 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -74.41 -1.54 -75.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584586.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.750 kcal (2) G-P(sol) polarization free energy of solvation -74.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds