Wall clock time and date at job start Sun Mar 29 2020 22:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37104 * 119.99862 * 2 1 4 4 H 1.07997 * 119.99869 * 155.75618 * 3 2 1 5 5 C 1.38948 * 120.00218 * 335.76157 * 3 2 1 6 6 N 1.31416 * 119.99461 * 330.70151 * 5 3 2 7 7 Si 1.86795 * 120.00291 * 150.70046 * 5 3 2 8 8 H 1.48497 * 109.47098 * 179.97438 * 7 5 3 9 9 H 1.48497 * 109.47192 * 299.99893 * 7 5 3 10 10 H 1.48502 * 109.47045 * 59.99950 * 7 5 3 11 11 C 1.34776 * 120.00278 * 180.02562 * 2 1 3 12 12 O 1.21293 * 119.99861 * 179.97438 * 11 2 1 13 13 C 1.50701 * 119.99803 * 0.02562 * 11 2 1 14 14 H 1.09002 * 109.48887 * 40.03859 * 13 11 2 15 15 C 1.53053 * 109.48676 * 279.99950 * 13 11 2 16 16 N 1.46959 * 109.36062 * 181.63384 * 15 13 11 17 17 C 1.46947 * 110.88248 * 59.32116 * 16 15 13 18 18 C 1.53053 * 109.36497 * 300.67627 * 17 16 15 19 19 N 1.46950 * 109.48845 * 160.10570 * 13 11 2 20 20 H 1.08999 * 109.46572 * 93.33442 * 1 2 3 21 21 H 1.09001 * 109.46859 * 213.33059 * 1 2 3 22 22 H 1.08998 * 109.47539 * 333.33631 * 1 2 3 23 23 H 0.96989 * 120.00689 * 354.65226 * 6 5 3 24 24 H 1.08993 * 109.48647 * 301.59611 * 15 13 11 25 25 H 1.08995 * 109.48973 * 61.66364 * 15 13 11 26 26 H 1.00904 * 110.99775 * 295.44746 * 16 15 13 27 27 H 1.09003 * 109.49491 * 60.64423 * 17 16 15 28 28 H 1.09006 * 109.49118 * 180.70922 * 17 16 15 29 29 H 1.08995 * 109.48973 * 178.37098 * 18 17 16 30 30 H 1.09002 * 109.48955 * 298.41629 * 18 17 16 31 31 H 1.00898 * 111.00515 * 303.15394 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1591 1.2286 0.3841 5 6 1.5477 2.3377 -0.4940 6 7 0.6390 2.2491 -1.4392 7 14 2.0288 4.0099 0.1854 8 1 1.2471 5.0677 -0.5038 9 1 1.7440 4.0529 1.6421 10 1 3.4784 4.2383 -0.0426 11 6 2.1390 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0017 14 1 0.5226 -2.3934 -0.6630 15 6 0.9127 -2.7901 1.4189 16 7 0.2124 -4.0821 1.4216 17 6 1.0956 -5.1577 0.9499 18 6 1.5684 -4.8398 -0.4706 19 7 2.2687 -3.5478 -0.4735 20 1 -0.3632 -0.0598 -1.0259 21 1 -0.3633 -0.8586 0.5647 22 1 -0.3634 0.9183 0.4611 23 1 0.4447 1.3905 -1.8463 24 1 1.7734 -2.8417 2.0855 25 1 0.2344 -2.0081 1.7599 26 1 -0.6305 -4.0377 0.8687 27 1 1.9584 -5.2362 1.6113 28 1 0.5506 -6.1017 0.9491 29 1 2.2466 -5.6219 -0.8117 30 1 0.7076 -4.7886 -1.1375 31 1 2.6367 -3.3381 -1.3892 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160584725.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:14 Heat of formation + Delta-G solvation = -16.071191 kcal Electronic energy + Delta-G solvation = -14897.319098 eV Core-core repulsion = 12407.050268 eV Total energy + Delta-G solvation = -2490.268830 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.51774 -37.51502 -34.94922 -32.74364 -31.87790 -30.56220 -26.55490 -25.34060 -24.15612 -23.06367 -20.74326 -19.11068 -17.44531 -16.54421 -16.09972 -15.35380 -14.74693 -14.61048 -14.14260 -13.83317 -13.50198 -13.09894 -12.76544 -12.51313 -11.81164 -11.74063 -11.34197 -11.23598 -11.17770 -10.85743 -10.76363 -10.20922 -10.02144 -9.00467 -8.82964 -8.15150 -8.10063 -7.84671 -6.66939 -3.88843 3.29389 3.35626 3.55546 3.75532 4.05933 4.24929 4.37345 4.77759 5.02049 5.12458 5.21607 5.31278 5.33874 5.47473 5.58901 5.67318 5.76911 5.98171 6.03855 6.28159 6.29818 6.56996 6.90268 7.11841 7.35646 7.49932 7.88275 8.09175 8.61310 8.91773 9.39647 9.87183 10.59534 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060257 B = 0.008186 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.564150 B = 3419.849289 C = 3539.068914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.453 5.453 3 C -0.405 4.405 4 H 0.091 0.909 5 C 0.008 3.992 6 N -0.875 5.875 7 Si 1.073 2.927 8 H -0.280 1.280 9 H -0.284 1.284 10 H -0.283 1.283 11 C 0.451 3.549 12 O -0.563 6.563 13 C 0.043 3.957 14 H 0.044 0.956 15 C 0.069 3.931 16 N -0.684 5.684 17 C 0.057 3.943 18 C 0.020 3.980 19 N -0.662 5.662 20 H 0.042 0.958 21 H 0.047 0.953 22 H 0.073 0.927 23 H 0.273 0.727 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.335 0.665 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.024 0.976 31 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.399 -9.748 2.293 10.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.174 5.174 3 C -0.532 4.532 4 H 0.109 0.891 5 C -0.199 4.199 6 N -0.510 5.510 7 Si 0.899 3.101 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.209 1.209 11 C 0.238 3.762 12 O -0.444 6.444 13 C -0.072 4.072 14 H 0.061 0.939 15 C -0.061 4.061 16 N -0.311 5.311 17 C -0.073 4.073 18 C -0.111 4.111 19 N -0.295 5.295 20 H 0.060 0.940 21 H 0.065 0.935 22 H 0.092 0.908 23 H 0.085 0.915 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.152 0.848 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.042 0.958 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.745 -8.332 3.504 9.784 hybrid contribution -0.359 -1.366 -1.916 2.381 sum -4.105 -9.698 1.588 10.650 Atomic orbital electron populations 1.21762 0.82836 1.01554 1.00224 1.43628 1.04359 1.05332 1.64081 1.20371 1.02712 0.85350 1.44738 0.89100 1.26369 0.96090 1.03393 0.94020 1.70795 1.33218 1.28735 1.18229 0.83447 0.76386 0.74138 0.76139 1.20549 1.20995 1.20892 1.19768 0.88133 0.83984 0.84345 1.90532 1.13610 1.86495 1.53800 1.22123 0.94297 0.92264 0.98506 0.93870 1.22113 0.99111 0.90642 0.94264 1.60815 1.07789 1.04805 1.57720 1.22119 0.97162 0.94178 0.93806 1.22700 0.97312 0.92803 0.98304 1.60098 1.35879 1.00613 1.32875 0.93961 0.93498 0.90800 0.91550 0.89591 0.89740 0.84790 0.89960 0.90510 0.90208 0.95757 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.71 8.08 59.85 0.48 2.19 16 2 N -0.45 -11.53 2.88 -122.19 -0.35 -11.88 16 3 C -0.40 -11.50 9.06 -14.93 -0.14 -11.63 16 4 H 0.09 2.77 7.56 -52.49 -0.40 2.37 16 5 C 0.01 0.23 4.62 -17.47 -0.08 0.15 16 6 N -0.88 -24.30 12.74 55.50 0.71 -23.60 16 7 Si 1.07 23.88 30.01 -169.99 -5.10 18.78 16 8 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 C 0.45 11.12 6.82 -10.99 -0.07 11.05 16 12 O -0.56 -16.17 16.26 5.55 0.09 -16.08 16 13 C 0.04 0.81 2.15 -68.81 -0.15 0.67 16 14 H 0.04 0.78 7.27 -51.93 -0.38 0.40 16 15 C 0.07 1.15 5.75 -3.76 -0.02 1.13 16 16 N -0.68 -9.32 6.91 -113.64 -0.79 -10.10 16 17 C 0.06 0.71 6.72 -3.77 -0.03 0.69 16 18 C 0.02 0.26 6.71 -3.77 -0.03 0.24 16 19 N -0.66 -11.60 6.12 -107.81 -0.66 -12.26 16 20 H 0.04 0.89 6.89 -51.93 -0.36 0.53 16 21 H 0.05 0.82 4.86 -51.93 -0.25 0.57 16 22 H 0.07 1.65 7.28 -51.93 -0.38 1.27 16 23 H 0.27 7.59 6.37 -40.82 -0.26 7.33 16 24 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 25 H 0.08 1.38 6.22 -51.93 -0.32 1.05 16 26 H 0.34 4.03 8.89 -39.29 -0.35 3.68 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.35 6.22 8.81 -39.29 -0.35 5.87 16 LS Contribution 251.02 15.07 3.78 3.78 Total: -1.00 -32.09 251.02 -6.30 -38.39 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -3.95 Total: 8.48 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.03 Total: 4.48 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -1.09 Total: -57.84 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.09 Total: -16.08 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.10 Total: 18.78 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.09 -6.30 -38.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584725.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.315 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds