Wall clock time and date at job start Sun Mar 29 2020 22:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37104 * 119.99862 * 2 1 4 4 H 1.07997 * 119.99869 * 155.75618 * 3 2 1 5 5 C 1.38948 * 120.00218 * 335.76157 * 3 2 1 6 6 N 1.31416 * 119.99461 * 330.70151 * 5 3 2 7 7 Si 1.86795 * 120.00291 * 150.70046 * 5 3 2 8 8 H 1.48497 * 109.47098 * 179.97438 * 7 5 3 9 9 H 1.48497 * 109.47192 * 299.99893 * 7 5 3 10 10 H 1.48502 * 109.47045 * 59.99950 * 7 5 3 11 11 C 1.34776 * 120.00278 * 180.02562 * 2 1 3 12 12 O 1.21293 * 119.99861 * 179.97438 * 11 2 1 13 13 C 1.50701 * 119.99803 * 0.02562 * 11 2 1 14 14 H 1.09002 * 109.48887 * 40.03859 * 13 11 2 15 15 C 1.53053 * 109.48676 * 279.99950 * 13 11 2 16 16 N 1.46959 * 109.36062 * 181.63384 * 15 13 11 17 17 C 1.46947 * 110.88248 * 59.32116 * 16 15 13 18 18 C 1.53053 * 109.36497 * 300.67627 * 17 16 15 19 19 N 1.46950 * 109.48845 * 160.10570 * 13 11 2 20 20 H 1.08999 * 109.46572 * 93.33442 * 1 2 3 21 21 H 1.09001 * 109.46859 * 213.33059 * 1 2 3 22 22 H 1.08998 * 109.47539 * 333.33631 * 1 2 3 23 23 H 0.96989 * 120.00689 * 354.65226 * 6 5 3 24 24 H 1.08993 * 109.48647 * 301.59611 * 15 13 11 25 25 H 1.08995 * 109.48973 * 61.66364 * 15 13 11 26 26 H 1.00904 * 110.99775 * 295.44746 * 16 15 13 27 27 H 1.09003 * 109.49491 * 60.64423 * 17 16 15 28 28 H 1.09006 * 109.49118 * 180.70922 * 17 16 15 29 29 H 1.08995 * 109.48973 * 178.37098 * 18 17 16 30 30 H 1.09002 * 109.48955 * 298.41629 * 18 17 16 31 31 H 1.00898 * 111.00515 * 303.15394 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1591 1.2286 0.3841 5 6 1.5477 2.3377 -0.4940 6 7 0.6390 2.2491 -1.4392 7 14 2.0288 4.0099 0.1854 8 1 1.2471 5.0677 -0.5038 9 1 1.7440 4.0529 1.6421 10 1 3.4784 4.2383 -0.0426 11 6 2.1390 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0017 14 1 0.5226 -2.3934 -0.6630 15 6 0.9127 -2.7901 1.4189 16 7 0.2124 -4.0821 1.4216 17 6 1.0956 -5.1577 0.9499 18 6 1.5684 -4.8398 -0.4706 19 7 2.2687 -3.5478 -0.4735 20 1 -0.3632 -0.0598 -1.0259 21 1 -0.3633 -0.8586 0.5647 22 1 -0.3634 0.9183 0.4611 23 1 0.4447 1.3905 -1.8463 24 1 1.7734 -2.8417 2.0855 25 1 0.2344 -2.0081 1.7599 26 1 -0.6305 -4.0377 0.8687 27 1 1.9584 -5.2362 1.6113 28 1 0.5506 -6.1017 0.9491 29 1 2.2466 -5.6219 -0.8117 30 1 0.7076 -4.7886 -1.1375 31 1 2.6367 -3.3381 -1.3892 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160584725.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:13 Heat of formation + Delta-G solvation = -43.245387 kcal Electronic energy + Delta-G solvation = -14898.497460 eV Core-core repulsion = 12407.050268 eV Total energy + Delta-G solvation = -2491.447192 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.15667 -39.07171 -36.96951 -34.01336 -33.80517 -32.02050 -28.42063 -26.93135 -25.66147 -24.56665 -22.07940 -20.83272 -19.44050 -18.06425 -17.72340 -16.89958 -16.49561 -15.83743 -15.69207 -15.53177 -15.05169 -14.72780 -14.23092 -13.88090 -13.66707 -13.43709 -13.11260 -12.71594 -12.59875 -12.26386 -12.14737 -11.99479 -11.92188 -10.98466 -10.50214 -9.93465 -9.70765 -9.32344 -8.83296 -6.07366 1.48115 1.54121 1.82443 1.90605 2.33494 2.71265 2.92737 3.06218 3.31655 3.78193 3.86605 3.95149 4.12797 4.21830 4.22737 4.39486 4.52165 4.58609 4.72165 4.77850 4.94313 5.07608 5.66076 5.73459 5.85554 5.93985 6.15348 6.37261 6.57596 6.86234 7.35083 7.87410 8.42709 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060257 B = 0.008186 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.564150 B = 3419.849289 C = 3539.068914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.468 5.468 3 C -0.437 4.437 4 H 0.057 0.943 5 C -0.020 4.020 6 N -0.883 5.883 7 Si 1.120 2.880 8 H -0.272 1.272 9 H -0.267 1.267 10 H -0.279 1.279 11 C 0.442 3.558 12 O -0.615 6.615 13 C 0.059 3.941 14 H 0.059 0.941 15 C 0.079 3.921 16 N -0.675 5.675 17 C 0.057 3.943 18 C 0.021 3.979 19 N -0.683 5.683 20 H 0.043 0.957 21 H 0.087 0.913 22 H 0.060 0.940 23 H 0.265 0.735 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.350 0.650 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.041 0.959 31 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.005 -10.785 2.563 12.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.188 5.188 3 C -0.565 4.565 4 H 0.075 0.925 5 C -0.223 4.223 6 N -0.517 5.517 7 Si 0.940 3.060 8 H -0.197 1.197 9 H -0.192 1.192 10 H -0.205 1.205 11 C 0.231 3.769 12 O -0.500 6.500 13 C -0.057 4.057 14 H 0.077 0.923 15 C -0.052 4.052 16 N -0.304 5.304 17 C -0.073 4.073 18 C -0.109 4.109 19 N -0.316 5.316 20 H 0.061 0.939 21 H 0.105 0.895 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.169 0.831 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.117 0.883 30 H 0.059 0.941 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.404 -9.409 3.772 11.488 hybrid contribution 0.163 -1.142 -2.033 2.337 sum -5.241 -10.551 1.739 11.909 Atomic orbital electron populations 1.21817 0.80300 1.02700 1.00803 1.43861 1.06025 1.04941 1.63995 1.20313 1.02311 0.87533 1.46305 0.92508 1.27698 0.95197 1.06212 0.93224 1.70901 1.33789 1.28313 1.18747 0.82866 0.76357 0.70286 0.76504 1.19660 1.19160 1.20451 1.20848 0.87979 0.85749 0.82359 1.90487 1.16146 1.87612 1.55728 1.21980 0.93824 0.89471 1.00396 0.92316 1.21925 0.98552 0.92595 0.92107 1.60789 1.08114 1.03244 1.58262 1.22237 0.97043 0.95132 0.92851 1.22851 0.98045 0.90775 0.99206 1.60115 1.36840 1.01929 1.32682 0.93866 0.89500 0.92100 0.92404 0.92057 0.89271 0.83120 0.91395 0.86836 0.88315 0.94099 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.63 8.08 127.77 1.03 4.66 16 2 N -0.47 -24.16 2.88 -658.88 -1.90 -26.06 16 3 C -0.44 -25.55 9.06 84.04 0.76 -24.79 16 4 H 0.06 3.64 7.56 -2.91 -0.02 3.62 16 5 C -0.02 -1.07 4.62 84.93 0.39 -0.67 16 6 N -0.88 -48.99 12.74 21.66 0.28 -48.71 16 7 Si 1.12 47.99 30.01 68.60 2.06 50.05 16 8 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 9 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 C 0.44 22.18 6.82 87.66 0.60 22.78 16 12 O -0.61 -36.70 16.26 -3.07 -0.05 -36.75 16 13 C 0.06 2.14 2.15 44.18 0.09 2.23 16 14 H 0.06 1.97 7.27 -2.39 -0.02 1.95 16 15 C 0.08 2.52 5.75 86.31 0.50 3.02 16 16 N -0.68 -16.23 6.91 -513.44 -3.55 -19.78 16 17 C 0.06 1.22 6.72 86.31 0.58 1.80 16 18 C 0.02 0.49 6.71 86.31 0.58 1.07 16 19 N -0.68 -23.19 6.12 -495.01 -3.03 -26.22 16 20 H 0.04 1.78 6.89 -2.39 -0.02 1.77 16 21 H 0.09 2.86 4.86 -2.39 -0.01 2.85 16 22 H 0.06 2.68 7.28 -2.39 -0.02 2.66 16 23 H 0.27 14.81 6.37 -92.72 -0.59 14.21 16 24 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.09 2.72 6.22 -2.39 -0.01 2.70 16 26 H 0.35 6.93 8.89 -89.69 -0.80 6.13 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.34 12.10 8.81 -89.70 -0.79 11.30 16 Total: -1.00 -71.37 251.02 -1.91 -73.28 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.25 Total: 24.09 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 4.53 Total: 10.10 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -8.20 Total: -120.77 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.05 Total: -36.75 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.06 Total: 50.05 kcal Total: -71.37 -1.91 -73.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584725.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.035 kcal (2) G-P(sol) polarization free energy of solvation -71.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds