Wall clock time and date at job start Sun Mar 29 2020 22:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99864 * 2 1 4 4 H 1.08993 * 109.46074 * 329.99450 * 3 2 1 5 5 C 1.53042 * 109.46338 * 89.97194 * 3 2 1 6 6 C 1.53189 * 109.31010 * 181.36916 * 5 3 2 7 7 N 1.46927 * 108.77905 * 305.36392 * 6 5 3 8 8 C 1.36944 * 120.62851 * 233.63644 * 7 6 5 9 9 H 1.07993 * 119.99913 * 27.67367 * 8 7 6 10 10 C 1.38810 * 119.99279 * 207.67469 * 8 7 6 11 11 N 1.31621 * 120.00520 * 17.35136 * 10 8 7 12 12 Si 1.86807 * 119.99461 * 197.34673 * 10 8 7 13 13 H 1.48497 * 109.46738 * 90.00615 * 12 10 8 14 14 H 1.48505 * 109.46914 * 210.00159 * 12 10 8 15 15 H 1.48491 * 109.47280 * 330.00239 * 12 10 8 16 16 C 1.46923 * 118.73817 * 53.60753 * 7 6 5 17 17 C 1.53046 * 109.45572 * 210.02239 * 3 2 1 18 18 C 1.53002 * 109.50018 * 298.57790 * 17 3 2 19 19 C 1.53003 * 109.49315 * 58.67726 * 17 3 2 20 20 H 1.08999 * 109.47287 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47245 * 300.00737 * 1 2 3 22 22 H 1.09001 * 109.46440 * 60.00175 * 1 2 3 23 23 H 1.09001 * 109.49373 * 301.32130 * 5 3 2 24 24 H 1.08997 * 109.49519 * 61.38471 * 5 3 2 25 25 H 1.08997 * 109.58767 * 65.15214 * 6 5 3 26 26 H 1.09002 * 109.58318 * 185.57566 * 6 5 3 27 27 H 0.96996 * 119.99976 * 179.97438 * 11 10 8 28 28 H 1.08994 * 109.58567 * 66.18119 * 16 7 6 29 29 H 1.09002 * 109.58562 * 186.60604 * 16 7 6 30 30 H 1.08998 * 109.46486 * 60.00126 * 18 17 3 31 31 H 1.09001 * 109.46981 * 179.97438 * 18 17 3 32 32 H 1.08992 * 109.47063 * 299.99973 * 18 17 3 33 33 H 1.08999 * 109.47550 * 60.00310 * 19 17 3 34 34 H 1.09008 * 109.46982 * 179.97438 * 19 17 3 35 35 H 1.08996 * 109.47355 * 299.99511 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9991 -0.5139 5 6 2.2170 1.7716 1.4430 6 6 2.8083 3.1848 1.4390 7 7 4.0310 3.1836 0.6242 8 6 5.2115 3.6516 1.1368 9 1 5.3942 3.6059 2.2002 10 6 6.1731 4.1846 0.2895 11 7 5.8429 4.5576 -0.9288 12 14 7.9358 4.3728 0.8785 13 1 8.6980 3.1385 0.5614 14 1 8.5647 5.5320 0.1958 15 1 7.9460 4.5977 2.3462 16 6 3.9631 2.6702 -0.7507 17 6 3.3590 1.2630 -0.7220 18 6 4.3052 0.3159 0.0187 19 6 3.1558 0.7657 -2.1546 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 1.2593 1.7794 1.9635 24 1 2.9014 1.0917 1.9503 25 1 2.0864 3.8818 1.0135 26 1 3.0495 3.4828 2.4594 27 1 6.5148 4.9304 -1.5207 28 1 3.3354 3.3252 -1.3547 29 1 4.9663 2.6287 -1.1752 30 1 3.8736 -0.6847 0.0409 31 1 5.2655 0.2857 -0.4962 32 1 4.4505 0.6717 1.0386 33 1 2.4828 1.4418 -2.6820 34 1 4.1166 0.7361 -2.6687 35 1 2.7233 -0.2346 -2.1342 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170424637.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:32 Heat of formation + Delta-G solvation = -34.918984 kcal Electronic energy + Delta-G solvation = -15607.162615 eV Core-core repulsion = 13219.616826 eV Total energy + Delta-G solvation = -2387.545788 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.07497 -36.19378 -33.45417 -31.99873 -29.56043 -26.64016 -26.47451 -25.76479 -24.54830 -21.91023 -20.57964 -17.96409 -16.80847 -15.96552 -14.95591 -14.81752 -14.56158 -13.78143 -13.43898 -13.15863 -13.02219 -12.55650 -12.17182 -11.73036 -11.38041 -11.26085 -11.21607 -10.86397 -10.81573 -10.61171 -10.37968 -10.13566 -10.01060 -9.94618 -9.59576 -9.39673 -8.86166 -8.42641 -6.65402 -5.76793 -3.18502 3.39823 3.46872 3.47651 4.22748 4.51607 5.28646 5.37280 5.46819 5.51826 5.60196 5.64317 5.75550 5.80943 5.89184 6.12332 6.16583 6.34086 6.37812 6.47272 6.51323 6.58552 6.63028 6.75079 6.93914 6.95140 7.08701 7.18713 7.39998 7.62626 7.73773 7.82745 8.47272 9.23357 9.86755 10.43488 11.31890 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046947 B = 0.009863 C = 0.009201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.270381 B = 2838.203480 C = 3042.550073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.156 4.156 6 C 0.147 3.853 7 N -0.590 5.590 8 C -0.250 4.250 9 H 0.066 0.934 10 C 0.003 3.997 11 N -0.903 5.903 12 Si 0.901 3.099 13 H -0.287 1.287 14 H -0.292 1.292 15 H -0.279 1.279 16 C 0.184 3.816 17 C -0.085 4.085 18 C -0.120 4.120 19 C -0.132 4.132 20 H 0.076 0.924 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.016 0.984 26 H 0.056 0.944 27 H 0.253 0.747 28 H 0.016 0.984 29 H 0.093 0.907 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 -6.938 0.505 10.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C 0.050 3.950 4 H 0.067 0.933 5 C -0.195 4.195 6 C 0.020 3.980 7 N -0.312 5.312 8 C -0.379 4.379 9 H 0.083 0.917 10 C -0.196 4.196 11 N -0.547 5.547 12 Si 0.731 3.269 13 H -0.214 1.214 14 H -0.218 1.218 15 H -0.205 1.205 16 C 0.058 3.942 17 C -0.087 4.087 18 C -0.177 4.177 19 C -0.190 4.190 20 H 0.094 0.906 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.089 0.911 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.112 0.888 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.459 -6.994 0.398 10.233 hybrid contribution 0.605 0.397 0.219 0.756 sum -6.854 -6.597 0.618 9.533 Atomic orbital electron populations 1.22662 0.82718 1.01614 0.99410 1.87907 1.18178 1.29375 1.95043 1.22144 0.94418 0.82732 0.95719 0.93287 1.22590 1.00010 1.00339 0.96601 1.20868 0.89166 0.92149 0.95774 1.44051 1.04636 1.71247 1.11247 1.19181 0.92339 1.33637 0.92779 0.91672 1.25017 0.99235 0.98337 0.96988 1.70027 1.32528 1.44386 1.07793 0.86311 0.85231 0.77247 0.78123 1.21431 1.21814 1.20465 1.20881 1.00785 0.86659 0.85918 1.21406 0.93301 1.00071 0.93904 1.21625 0.97697 0.97241 1.01159 1.21709 1.00927 1.00255 0.96078 0.90553 0.94660 0.94685 0.93408 0.91099 0.96634 0.92577 0.93650 0.96563 0.88845 0.94089 0.93744 0.91774 0.93709 0.92976 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.82 101.05 1.09 1.52 16 2 O -0.39 -6.57 9.01 -35.23 -0.32 -6.88 16 3 C 0.11 1.97 1.70 -26.69 -0.05 1.92 16 4 H 0.05 0.90 7.78 -51.93 -0.40 0.50 16 5 C -0.16 -2.89 5.35 -26.61 -0.14 -3.03 16 6 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 7 N -0.59 -14.79 2.43 -172.34 -0.42 -15.21 16 8 C -0.25 -6.84 9.59 -15.06 -0.14 -6.98 16 9 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 10 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 11 N -0.90 -26.17 11.19 55.49 0.62 -25.55 16 12 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.18 4.41 3.99 -3.73 -0.01 4.40 16 17 C -0.08 -1.69 0.60 -154.40 -0.09 -1.78 16 18 C -0.12 -2.39 7.85 37.16 0.29 -2.10 16 19 C -0.13 -2.33 8.32 37.16 0.31 -2.02 16 20 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.03 0.43 7.84 -51.93 -0.41 0.02 16 22 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 23 H 0.05 0.78 7.84 -51.93 -0.41 0.37 16 24 H 0.07 1.38 6.34 -51.93 -0.33 1.05 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 27 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 2.51 6.04 -51.93 -0.31 2.20 16 30 H 0.04 0.75 7.72 -51.93 -0.40 0.35 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.37 5.97 -51.93 -0.31 1.06 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 35 H 0.05 0.86 7.65 -51.93 -0.40 0.46 16 LS Contribution 271.44 15.07 4.09 4.09 Total: -1.00 -28.97 271.44 -5.80 -34.76 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -5.89 Total: -2.99 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 1.14 Total: -4.97 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.20 Total: -40.76 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.32 Total: -6.88 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.97 -5.80 -34.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170424637.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.155 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds