Wall clock time and date at job start Sun Mar 29 2020 22:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99864 * 2 1 4 4 H 1.08993 * 109.46074 * 329.99450 * 3 2 1 5 5 C 1.53042 * 109.46338 * 89.97194 * 3 2 1 6 6 C 1.53189 * 109.31010 * 181.36916 * 5 3 2 7 7 N 1.46927 * 108.77905 * 305.36392 * 6 5 3 8 8 C 1.36944 * 120.62851 * 233.63644 * 7 6 5 9 9 H 1.07993 * 119.99913 * 27.67367 * 8 7 6 10 10 C 1.38810 * 119.99279 * 207.67469 * 8 7 6 11 11 N 1.31621 * 120.00520 * 17.35136 * 10 8 7 12 12 Si 1.86807 * 119.99461 * 197.34673 * 10 8 7 13 13 H 1.48497 * 109.46738 * 90.00615 * 12 10 8 14 14 H 1.48505 * 109.46914 * 210.00159 * 12 10 8 15 15 H 1.48491 * 109.47280 * 330.00239 * 12 10 8 16 16 C 1.46923 * 118.73817 * 53.60753 * 7 6 5 17 17 C 1.53046 * 109.45572 * 210.02239 * 3 2 1 18 18 C 1.53002 * 109.50018 * 298.57790 * 17 3 2 19 19 C 1.53003 * 109.49315 * 58.67726 * 17 3 2 20 20 H 1.08999 * 109.47287 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47245 * 300.00737 * 1 2 3 22 22 H 1.09001 * 109.46440 * 60.00175 * 1 2 3 23 23 H 1.09001 * 109.49373 * 301.32130 * 5 3 2 24 24 H 1.08997 * 109.49519 * 61.38471 * 5 3 2 25 25 H 1.08997 * 109.58767 * 65.15214 * 6 5 3 26 26 H 1.09002 * 109.58318 * 185.57566 * 6 5 3 27 27 H 0.96996 * 119.99976 * 179.97438 * 11 10 8 28 28 H 1.08994 * 109.58567 * 66.18119 * 16 7 6 29 29 H 1.09002 * 109.58562 * 186.60604 * 16 7 6 30 30 H 1.08998 * 109.46486 * 60.00126 * 18 17 3 31 31 H 1.09001 * 109.46981 * 179.97438 * 18 17 3 32 32 H 1.08992 * 109.47063 * 299.99973 * 18 17 3 33 33 H 1.08999 * 109.47550 * 60.00310 * 19 17 3 34 34 H 1.09008 * 109.46982 * 179.97438 * 19 17 3 35 35 H 1.08996 * 109.47355 * 299.99511 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9991 -0.5139 5 6 2.2170 1.7716 1.4430 6 6 2.8083 3.1848 1.4390 7 7 4.0310 3.1836 0.6242 8 6 5.2115 3.6516 1.1368 9 1 5.3942 3.6059 2.2002 10 6 6.1731 4.1846 0.2895 11 7 5.8429 4.5576 -0.9288 12 14 7.9358 4.3728 0.8785 13 1 8.6980 3.1385 0.5614 14 1 8.5647 5.5320 0.1958 15 1 7.9460 4.5977 2.3462 16 6 3.9631 2.6702 -0.7507 17 6 3.3590 1.2630 -0.7220 18 6 4.3052 0.3159 0.0187 19 6 3.1558 0.7657 -2.1546 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 1.2593 1.7794 1.9635 24 1 2.9014 1.0917 1.9503 25 1 2.0864 3.8818 1.0135 26 1 3.0495 3.4828 2.4594 27 1 6.5148 4.9304 -1.5207 28 1 3.3354 3.3252 -1.3547 29 1 4.9663 2.6287 -1.1752 30 1 3.8736 -0.6847 0.0409 31 1 5.2655 0.2857 -0.4962 32 1 4.4505 0.6717 1.0386 33 1 2.4828 1.4418 -2.6820 34 1 4.1166 0.7361 -2.6687 35 1 2.7233 -0.2346 -2.1342 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170424637.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:32 Heat of formation + Delta-G solvation = -52.068097 kcal Electronic energy + Delta-G solvation = -15607.906256 eV Core-core repulsion = 13219.616826 eV Total energy + Delta-G solvation = -2388.289430 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.61839 -37.71094 -35.21823 -33.81528 -31.37088 -28.09283 -27.80646 -27.56232 -26.24782 -23.61677 -22.29362 -19.61926 -18.73101 -17.33030 -16.75409 -16.34108 -15.99969 -15.51838 -15.19813 -14.91083 -14.44526 -14.07742 -13.74275 -13.31565 -13.00151 -12.93390 -12.83015 -12.60351 -12.46306 -12.29117 -12.14287 -11.81628 -11.77041 -11.61779 -11.25723 -11.05589 -10.53225 -10.22874 -8.67770 -7.86370 -5.30673 1.46658 1.48729 1.56702 2.51771 2.93925 3.29683 3.66776 3.89464 3.99677 4.19183 4.34472 4.50628 4.55938 4.60007 4.64986 4.74056 4.84613 4.88793 4.93458 4.98180 5.06134 5.06757 5.13541 5.30373 5.37168 5.45819 5.48211 5.60631 5.70335 5.77101 6.37926 6.43222 7.15921 7.86613 8.38674 9.20273 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046947 B = 0.009863 C = 0.009201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.270381 B = 2838.203480 C = 3042.550073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.116 3.884 4 H 0.050 0.950 5 C -0.145 4.145 6 C 0.143 3.857 7 N -0.607 5.607 8 C -0.258 4.258 9 H 0.066 0.934 10 C -0.048 4.048 11 N -0.934 5.934 12 Si 0.962 3.038 13 H -0.287 1.287 14 H -0.295 1.295 15 H -0.269 1.269 16 C 0.195 3.805 17 C -0.084 4.084 18 C -0.110 4.110 19 C -0.125 4.125 20 H 0.100 0.900 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.015 0.985 26 H 0.057 0.943 27 H 0.250 0.750 28 H -0.007 1.007 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.756 -8.192 1.147 12.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.058 3.942 4 H 0.068 0.932 5 C -0.184 4.184 6 C 0.017 3.983 7 N -0.329 5.329 8 C -0.388 4.388 9 H 0.083 0.917 10 C -0.244 4.244 11 N -0.580 5.580 12 Si 0.791 3.209 13 H -0.214 1.214 14 H -0.222 1.222 15 H -0.193 1.193 16 C 0.069 3.931 17 C -0.086 4.086 18 C -0.167 4.167 19 C -0.183 4.183 20 H 0.118 0.882 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.011 0.989 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.551 -8.265 1.060 11.940 hybrid contribution 0.843 0.778 0.041 1.148 sum -7.708 -7.486 1.101 10.802 Atomic orbital electron populations 1.22934 0.80359 1.03556 1.00299 1.87869 1.20647 1.27903 1.95109 1.21874 0.93497 0.83725 0.95112 0.93213 1.22432 1.00953 0.97827 0.97183 1.21006 0.87886 0.94200 0.95177 1.44287 1.05355 1.71490 1.11807 1.19471 0.93502 1.32925 0.92924 0.91676 1.25728 1.02706 0.98693 0.97243 1.70174 1.33325 1.45634 1.08853 0.85336 0.80744 0.76770 0.78052 1.21353 1.22160 1.19349 1.20622 0.98656 0.88765 0.85105 1.21260 0.94308 0.97206 0.95796 1.21514 0.97353 0.98035 0.99830 1.21648 1.01043 1.01147 0.94470 0.88153 0.93702 0.93869 0.90472 0.91895 0.96668 0.92397 0.94135 0.98907 0.92279 0.92266 0.94807 0.93519 0.93208 0.93372 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 10.82 113.37 1.23 1.77 16 2 O -0.40 -12.16 9.01 -148.98 -1.34 -13.51 16 3 C 0.12 4.00 1.70 30.62 0.05 4.05 16 4 H 0.05 1.72 7.78 -2.39 -0.02 1.70 16 5 C -0.14 -5.06 5.35 30.67 0.16 -4.90 16 6 C 0.14 6.00 6.52 86.36 0.56 6.56 16 7 N -0.61 -30.70 2.43 -699.17 -1.70 -32.40 16 8 C -0.26 -14.27 9.59 84.03 0.81 -13.47 16 9 H 0.07 3.53 7.89 -2.91 -0.02 3.50 16 10 C -0.05 -2.72 4.91 84.86 0.42 -2.30 16 11 N -0.93 -55.52 11.19 21.65 0.24 -55.28 16 12 Si 0.96 45.30 29.59 68.60 2.03 47.33 16 13 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 14 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 16 C 0.19 9.51 3.99 86.35 0.34 9.86 16 17 C -0.08 -3.27 0.60 -52.11 -0.03 -3.31 16 18 C -0.11 -4.29 7.85 71.98 0.57 -3.72 16 19 C -0.13 -4.26 8.32 71.98 0.60 -3.66 16 20 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 21 H 0.04 0.92 7.84 -2.39 -0.02 0.90 16 22 H 0.04 0.90 8.08 -2.39 -0.02 0.88 16 23 H 0.08 2.25 7.84 -2.39 -0.02 2.23 16 24 H 0.06 2.32 6.34 -2.39 -0.02 2.31 16 25 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 26 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 27 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.06 3.29 6.04 -2.39 -0.01 3.27 16 30 H 0.06 2.06 7.72 -2.39 -0.02 2.05 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.96 5.97 -2.39 -0.01 1.95 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.64 8.14 -2.38 -0.02 1.63 16 35 H 0.07 2.11 7.65 -2.39 -0.02 2.09 16 Total: -1.00 -61.79 271.44 4.97 -56.82 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.04 Total: 6.13 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 4.70 Total: -9.11 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -1.46 Total: -87.67 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -1.34 Total: -13.51 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -61.79 4.97 -56.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170424637.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.755 kcal (2) G-P(sol) polarization free energy of solvation -61.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds