Wall clock time and date at job start Sun Mar 29 2020 22:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09006 * 110.43667 * 60.80342 * 5 3 2 7 7 C 1.54895 * 110.48281 * 298.26995 * 5 3 2 8 8 C 1.54890 * 102.74399 * 203.37562 * 7 5 3 9 9 C 1.54265 * 104.19752 * 37.94369 * 8 7 5 10 10 H 1.08998 * 110.03958 * 95.72068 * 9 8 7 11 11 N 1.46503 * 110.03220 * 217.10546 * 9 8 7 12 12 C 1.36944 * 119.99468 * 273.54297 * 11 9 8 13 13 H 1.07994 * 120.00378 * 0.02562 * 12 11 9 14 14 C 1.38811 * 119.99678 * 180.02562 * 12 11 9 15 15 N 1.31623 * 120.00320 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00079 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46882 * 59.99751 * 16 14 12 18 18 H 1.48495 * 109.47062 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46928 * 299.99756 * 16 14 12 20 20 C 1.53878 * 106.60008 * 336.38587 * 9 8 7 21 21 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 22 22 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 24 24 H 1.09000 * 110.75535 * 321.68538 * 7 5 3 25 25 H 1.08994 * 110.75579 * 85.06130 * 7 5 3 26 26 H 1.09001 * 110.48371 * 156.61631 * 8 7 5 27 27 H 1.08994 * 110.48830 * 279.13037 * 8 7 5 28 28 H 0.96997 * 120.00200 * 93.54504 * 11 9 8 29 29 H 0.96998 * 120.00162 * 180.02562 * 15 14 12 30 30 H 1.09003 * 110.03095 * 240.72297 * 20 9 8 31 31 H 1.08990 * 110.03273 * 119.28555 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 3.9687 0.7993 -0.9007 7 6 4.1490 0.6143 1.2678 8 6 5.5345 1.2937 1.4018 9 6 5.2817 2.7554 0.9783 10 1 5.1062 3.3742 1.8583 11 7 6.4312 3.2662 0.2272 12 6 7.4935 3.8175 0.8927 13 1 7.4842 3.8754 1.9710 14 6 8.5824 4.3020 0.1810 15 7 8.5941 4.2310 -1.1332 16 14 10.0319 5.0535 1.0887 17 1 10.6216 4.0425 2.0026 18 1 11.0572 5.4911 0.1077 19 1 9.5694 6.2237 1.8772 20 6 4.0303 2.7435 0.0830 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 3.5263 0.8326 2.1354 25 1 4.2579 -0.4613 1.1298 26 1 5.8823 1.2504 2.4339 27 1 6.2570 0.8212 0.7365 28 1 6.4397 3.2139 -0.7413 29 1 9.3552 4.5693 -1.6305 30 1 4.2783 3.1177 -0.9103 31 1 3.2467 3.3562 0.5284 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170503136.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:37 Heat of formation + Delta-G solvation = -106.018904 kcal Electronic energy + Delta-G solvation = -14213.295395 eV Core-core repulsion = 11686.833388 eV Total energy + Delta-G solvation = -2526.462007 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.67530 -39.09676 -37.43594 -35.50710 -32.67701 -30.10001 -29.18654 -27.88375 -25.27558 -23.39787 -21.37167 -20.62829 -19.33313 -18.61999 -17.71731 -17.39301 -16.85047 -15.88874 -15.57679 -14.85546 -14.82181 -14.47737 -14.01441 -13.50947 -13.12989 -12.96981 -12.73730 -12.61877 -12.33107 -12.12672 -12.09531 -11.81044 -11.69919 -11.65601 -11.51162 -11.32371 -10.88348 -8.97486 -7.91814 -5.20078 1.14752 1.49222 1.52010 1.58015 1.75606 2.58780 3.38824 3.51213 3.66760 3.85429 4.03071 4.32267 4.34718 4.41205 4.53394 4.61141 4.63407 4.64941 4.72896 4.89894 4.99297 5.13382 5.28330 5.34901 5.44135 5.52839 5.62731 6.30849 6.72174 7.36602 8.13202 8.36326 9.31685 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.078311 B = 0.005973 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.465030 B = 4686.687320 C = 4811.666650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.475 3.525 4 O -0.539 6.539 5 C -0.081 4.081 6 H 0.125 0.875 7 C -0.093 4.093 8 C -0.134 4.134 9 C 0.165 3.835 10 H 0.044 0.956 11 N -0.735 5.735 12 C -0.241 4.241 13 H 0.076 0.924 14 C -0.075 4.075 15 N -0.971 5.971 16 Si 0.972 3.028 17 H -0.277 1.277 18 H -0.297 1.297 19 H -0.280 1.280 20 C -0.111 4.111 21 H 0.059 0.941 22 H 0.134 0.866 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.373 0.627 29 H 0.250 0.750 30 H 0.061 0.939 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.726 -10.665 3.810 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.320 3.680 4 O -0.429 6.429 5 C -0.101 4.101 6 H 0.143 0.857 7 C -0.131 4.131 8 C -0.174 4.174 9 C 0.057 3.943 10 H 0.063 0.937 11 N -0.375 5.375 12 C -0.373 4.373 13 H 0.093 0.907 14 C -0.267 4.267 15 N -0.622 5.622 16 Si 0.801 3.199 17 H -0.203 1.203 18 H -0.223 1.223 19 H -0.206 1.206 20 C -0.150 4.150 21 H 0.078 0.922 22 H 0.152 0.848 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.205 0.795 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.861 -10.304 3.956 17.718 hybrid contribution 0.704 0.806 -0.228 1.094 sum -13.157 -9.498 3.729 16.650 Atomic orbital electron populations 1.23569 0.74956 1.05764 1.02433 1.86520 1.24872 1.32408 1.83579 1.23892 0.92180 0.81156 0.70767 1.90636 1.67772 1.37526 1.46942 1.21898 0.85994 0.98650 1.03518 0.85731 1.22385 0.95396 1.00652 0.94672 1.22971 0.96568 0.96559 1.01312 1.21093 0.86000 0.93803 0.93446 0.93742 1.42736 1.17348 1.71890 1.05521 1.19619 0.95850 1.30111 0.91698 0.90657 1.25530 1.01544 1.03410 0.96260 1.69809 1.32125 1.54013 1.06242 0.85238 0.79079 0.78462 0.77151 1.20269 1.22293 1.20619 1.22312 0.97396 0.94502 1.00749 0.92178 0.84785 0.92011 0.90551 0.88324 0.91674 0.92269 0.79456 0.94084 0.92000 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.36 -8.17 10.55 -51.41 -0.54 -8.71 16 3 C 0.48 13.26 7.25 71.23 0.52 13.77 16 4 O -0.54 -18.16 15.21 21.94 0.33 -17.82 16 5 C -0.08 -2.25 3.36 -10.46 -0.04 -2.29 16 6 H 0.12 3.16 8.14 -2.38 -0.02 3.14 16 7 C -0.09 -2.32 6.30 31.89 0.20 -2.12 16 8 C -0.13 -4.41 6.53 31.67 0.21 -4.20 16 9 C 0.17 6.54 3.55 45.72 0.16 6.70 16 10 H 0.04 1.82 8.09 -2.39 -0.02 1.80 16 11 N -0.73 -37.18 5.10 -319.50 -1.63 -38.81 16 12 C -0.24 -13.41 9.96 84.03 0.84 -12.57 16 13 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 14 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 15 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 16 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 20 C -0.11 -3.87 5.92 31.32 0.19 -3.68 16 21 H 0.06 1.00 8.13 -2.38 -0.02 0.98 16 22 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 24 H 0.08 1.77 8.05 -2.39 -0.02 1.75 16 25 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 2.14 8.05 -2.39 -0.02 2.12 16 28 H 0.37 20.22 7.49 -92.71 -0.69 19.52 16 29 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.06 2.32 7.60 -2.39 -0.02 2.30 16 31 H 0.07 2.60 6.91 -2.39 -0.02 2.59 16 Total: -1.00 -66.81 264.89 4.63 -62.17 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.42 Total: 20.96 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 3.74 Total: -6.65 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -1.35 Total: -98.23 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.21 Total: -26.53 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -66.81 4.63 -62.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170503136.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.845 kcal (2) G-P(sol) polarization free energy of solvation -66.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds