Wall clock time and date at job start Sun Mar 29 2020 21:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47484 * 2 1 4 4 C 1.53000 * 109.46797 * 120.00354 * 2 1 3 5 5 C 1.53001 * 109.46861 * 184.99844 * 4 2 1 6 6 C 1.50698 * 109.46946 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99703 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00022 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99995 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47065 * 59.99479 * 10 8 6 12 12 H 1.48498 * 109.47421 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46912 * 300.00041 * 10 8 6 14 14 N 1.46901 * 109.46962 * 239.99654 * 2 1 3 15 15 C 1.46905 * 110.99788 * 85.00300 * 14 2 1 16 16 H 1.08997 * 113.61734 * 30.00802 * 15 14 2 17 17 C 1.53109 * 114.63570 * 164.53065 * 15 14 2 18 18 O 1.45339 * 84.66982 * 140.00127 * 17 15 14 19 19 C 1.34394 * 89.44136 * 329.77428 * 18 17 15 20 20 O 1.20832 * 135.26378 * 210.32544 * 19 18 17 21 21 H 1.09001 * 109.47212 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46954 * 300.00240 * 1 2 3 23 23 H 1.09005 * 109.47416 * 60.00144 * 1 2 3 24 24 H 1.09002 * 109.47063 * 304.99315 * 4 2 1 25 25 H 1.08999 * 109.47748 * 64.99531 * 4 2 1 26 26 H 1.08999 * 109.47334 * 299.99463 * 5 4 2 27 27 H 1.09002 * 109.47563 * 59.99701 * 5 4 2 28 28 H 0.97005 * 119.99821 * 180.02562 * 9 8 6 29 29 H 1.00899 * 111.00323 * 208.95853 * 14 2 1 30 30 H 1.08999 * 114.00209 * 26.07361 * 17 15 14 31 31 H 1.08994 * 114.13964 * 253.94383 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5647 -0.6134 1.3137 6 6 4.0669 -1.3234 2.5444 7 1 3.3686 -1.8039 3.2135 8 6 5.4183 -1.3604 2.8157 9 7 6.2688 -0.7757 2.0007 10 14 6.0410 -2.2410 4.3409 11 1 5.6476 -3.6717 4.2817 12 1 7.5209 -2.1362 4.4036 13 1 5.4492 -1.6146 5.5504 14 7 2.0196 -0.6926 -1.1994 15 6 2.0824 0.2225 -2.3469 16 1 2.2757 1.2586 -2.0691 17 6 2.9152 -0.2883 -3.5258 18 8 1.8599 0.2850 -4.3444 19 6 0.9797 0.0382 -3.3592 20 8 -0.1999 -0.2181 -3.3064 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6053 -0.2618 2.1370 25 1 1.7515 -1.7716 1.2056 26 1 3.9994 -1.0730 0.4260 27 1 3.8532 0.4368 1.3573 28 1 7.2196 -0.8021 2.1914 29 1 2.9172 -1.1207 -1.0287 30 1 2.9810 -1.3747 -3.5844 31 1 3.8804 0.2057 -3.6370 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484290.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:59 Heat of formation + Delta-G solvation = -67.679109 kcal Electronic energy + Delta-G solvation = -14190.892161 eV Core-core repulsion = 11666.092692 eV Total energy + Delta-G solvation = -2524.799469 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.12343 -38.77324 -38.37433 -35.21892 -33.15685 -31.00378 -28.58356 -26.95682 -25.66528 -23.28485 -21.35742 -21.00640 -18.67750 -18.40080 -18.10091 -17.91533 -16.53402 -16.33610 -15.68434 -15.11023 -14.75105 -14.36170 -14.13309 -14.03063 -13.25303 -13.14636 -13.10322 -12.80968 -12.39985 -12.36834 -12.07557 -11.93467 -11.62808 -11.33496 -11.14943 -10.95150 -10.50950 -9.58181 -8.18207 -6.26978 0.84600 1.42914 1.43816 1.51749 2.22157 2.43021 2.71596 3.05564 3.16061 3.45492 3.92099 4.06154 4.30407 4.38834 4.46278 4.49324 4.75895 4.78799 4.93320 5.01057 5.08766 5.21732 5.42393 5.55715 5.69418 5.86907 5.99255 6.26298 6.30678 6.36401 6.88532 7.41771 8.92459 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047979 B = 0.006475 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.450382 B = 4323.153556 C = 4770.759029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.087 3.913 3 H 0.047 0.953 4 C -0.103 4.103 5 C 0.027 3.973 6 C -0.544 4.544 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.927 5.927 10 Si 0.956 3.044 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.271 1.271 14 N -0.672 5.672 15 C -0.005 4.005 16 H 0.135 0.865 17 C 0.045 3.955 18 O -0.352 6.352 19 C 0.484 3.516 20 O -0.459 6.459 21 H 0.052 0.948 22 H 0.065 0.935 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.008 0.992 27 H -0.009 1.009 28 H 0.263 0.737 29 H 0.360 0.640 30 H 0.122 0.878 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 2.037 -7.932 9.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.022 4.022 3 H 0.065 0.935 4 C -0.141 4.141 5 C -0.010 4.010 6 C -0.582 4.582 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.567 5.567 10 Si 0.781 3.219 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.196 1.196 14 N -0.310 5.310 15 C -0.118 4.118 16 H 0.152 0.848 17 C -0.030 4.030 18 O -0.268 6.268 19 C 0.323 3.677 20 O -0.341 6.341 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.026 0.974 27 H 0.009 0.991 28 H 0.072 0.928 29 H 0.185 0.815 30 H 0.140 0.860 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.056 1.803 -8.385 10.499 hybrid contribution 1.269 0.134 1.023 1.636 sum -4.787 1.937 -7.362 8.992 Atomic orbital electron populations 1.21732 0.93975 1.01934 1.01233 1.21656 0.95832 0.95707 0.89046 0.93543 1.21662 0.96571 0.99827 0.95994 1.19020 0.91536 0.94900 0.95556 1.21663 0.92424 1.34635 1.09523 0.92730 1.25824 0.97381 0.96293 0.99688 1.70036 1.02719 1.45207 1.38779 0.85638 0.77035 0.79314 0.79888 1.19441 1.20892 1.19633 1.60698 1.34392 1.31321 1.04603 1.25662 0.92780 1.00029 0.93332 0.84807 1.24806 0.92545 1.01847 0.83756 1.88751 1.22412 1.72129 1.43546 1.24267 0.86489 0.70477 0.86502 1.90681 1.15079 1.43046 1.85269 0.92897 0.91599 0.93226 0.92374 0.92679 0.97365 0.99064 0.92821 0.81542 0.85977 0.82761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 9.42 71.98 0.68 -3.13 16 2 C 0.09 2.74 2.65 44.91 0.12 2.86 16 3 H 0.05 1.45 7.52 -2.39 -0.02 1.43 16 4 C -0.10 -3.91 4.74 30.59 0.15 -3.77 16 5 C 0.03 1.29 4.80 29.85 0.14 1.43 16 6 C -0.54 -29.46 9.11 25.60 0.23 -29.22 16 7 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 8 C 0.01 0.35 5.46 84.66 0.46 0.81 16 9 N -0.93 -53.09 13.29 21.45 0.28 -52.81 16 10 Si 0.96 42.72 29.54 68.60 2.03 44.75 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 N -0.67 -19.59 6.36 -523.38 -3.33 -22.92 16 15 C -0.01 -0.13 4.29 44.24 0.19 0.06 16 16 H 0.13 2.85 7.60 -2.39 -0.02 2.83 16 17 C 0.04 0.81 8.75 60.42 0.53 1.34 16 18 O -0.35 -8.55 12.35 -54.08 -0.67 -9.22 16 19 C 0.48 13.63 9.26 59.67 0.55 14.18 16 20 O -0.46 -15.93 17.23 20.87 0.36 -15.57 16 21 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.05 1.45 7.13 -2.38 -0.02 1.43 16 24 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.01 0.40 6.43 -2.39 -0.02 0.38 16 27 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 29 H 0.36 11.03 6.43 -89.69 -0.58 10.45 16 30 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.15 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -63.39 266.72 2.27 -61.12 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.55 Total: 10.09 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 3.05 Total: -15.44 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -3.05 Total: -75.73 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.31 Total: -24.79 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -63.39 2.27 -61.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484290.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.557 kcal (2) G-P(sol) polarization free energy of solvation -63.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds