Wall clock time and date at job start Sun Mar 29 2020 22:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34640 * 117.00182 * 2 1 4 4 O 1.21514 * 119.99763 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99811 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99504 * 179.97438 * 5 3 2 7 7 H 1.09005 * 109.35538 * 35.17334 * 6 5 3 8 8 C 1.52957 * 109.41351 * 154.99655 * 6 5 3 9 9 C 1.53230 * 109.40528 * 183.70452 * 8 6 5 10 10 C 1.51262 * 108.53542 * 305.36889 * 9 8 6 11 11 C 1.37879 * 120.85543 * 231.37032 * 10 9 8 12 12 N 1.31512 * 120.00629 * 179.97438 * 11 10 9 13 13 Si 1.86806 * 119.99587 * 359.97438 * 11 10 9 14 14 H 1.48501 * 109.47016 * 89.99798 * 13 11 10 15 15 H 1.48498 * 109.46894 * 209.99936 * 13 11 10 16 16 H 1.48498 * 109.47107 * 330.00225 * 13 11 10 17 17 C 1.51276 * 118.29777 * 51.35075 * 10 9 8 18 18 C 1.52959 * 109.41223 * 275.34638 * 6 5 3 19 19 H 1.08996 * 109.46789 * 60.00407 * 1 2 3 20 20 H 1.09001 * 109.46921 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47054 * 300.00787 * 1 2 3 22 22 H 0.96991 * 120.00242 * 359.97438 * 5 3 2 23 23 H 1.08998 * 109.48115 * 63.72104 * 8 6 5 24 24 H 1.09002 * 109.49523 * 303.69145 * 8 6 5 25 25 H 1.09001 * 109.62403 * 185.65919 * 9 8 6 26 26 H 1.08996 * 109.62647 * 65.08627 * 9 8 6 27 27 H 0.96996 * 120.00254 * 180.02562 * 12 11 10 28 28 H 1.08991 * 109.62630 * 68.36686 * 17 10 9 29 29 H 1.09003 * 109.62166 * 188.93586 * 17 10 9 30 30 H 1.09000 * 109.48318 * 56.32391 * 18 6 5 31 31 H 1.08996 * 109.48280 * 296.27677 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0743 2.5754 -0.0011 7 1 3.4895 3.2791 0.5914 8 6 5.4702 2.4351 0.6082 9 6 6.1301 3.8154 0.6925 10 6 6.1110 4.4425 -0.6839 11 6 7.2625 4.9535 -1.2441 12 7 7.2269 5.4946 -2.4423 13 14 8.8733 4.8774 -0.3012 14 1 9.5758 3.6092 -0.6231 15 1 9.7279 6.0286 -0.6878 16 1 8.5966 4.9337 1.1566 17 6 4.7961 4.4941 -1.4302 18 6 4.1848 3.0891 -1.4376 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 3.9374 0.4566 -0.0005 23 1 6.0760 1.7802 -0.0181 24 1 5.3895 2.0090 1.6082 25 1 7.1604 3.7086 1.0319 26 1 5.5756 4.4443 1.3891 27 1 8.0370 5.8538 -2.8365 28 1 4.1183 5.1858 -0.9302 29 1 4.9695 4.8233 -2.4548 30 1 3.1927 3.1268 -1.8875 31 1 4.8210 2.4188 -2.0154 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193926308.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:05 Heat of formation + Delta-G solvation = -100.336597 kcal Electronic energy + Delta-G solvation = -14545.382270 eV Core-core repulsion = 12019.166666 eV Total energy + Delta-G solvation = -2526.215604 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.14058 -37.53272 -35.79105 -33.79509 -31.61043 -29.66155 -28.03316 -26.67295 -22.46468 -21.70040 -20.64279 -19.67880 -18.21885 -16.60293 -16.25818 -16.00974 -14.73256 -14.44195 -13.83349 -13.50899 -13.12198 -12.82565 -12.23653 -12.08619 -11.95173 -11.68563 -11.06597 -10.89608 -10.78463 -10.60039 -10.41838 -10.09965 -9.92306 -9.59343 -9.16060 -8.86774 -8.48229 -8.35611 -6.10979 -4.02633 2.52857 3.16812 3.25431 3.34616 3.35444 4.36478 4.60750 5.16155 5.19373 5.25957 5.49064 5.61574 5.83893 6.12050 6.33710 6.45669 6.53177 6.66942 6.73910 6.82067 6.98701 7.07013 7.20052 7.37218 7.62814 7.74357 7.82479 7.87235 8.37741 8.69200 8.95823 9.52698 10.98496 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066386 B = 0.007403 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.675428 B = 3781.209223 C = 4018.624401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.381 6.381 3 C 0.640 3.360 4 O -0.574 6.574 5 N -0.702 5.702 6 C 0.169 3.831 7 H 0.081 0.919 8 C -0.114 4.114 9 C -0.011 4.011 10 C -0.492 4.492 11 C 0.076 3.924 12 N -0.888 5.888 13 Si 0.888 3.112 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.267 1.267 17 C 0.012 3.988 18 C -0.117 4.117 19 H 0.061 0.939 20 H 0.097 0.903 21 H 0.060 0.940 22 H 0.400 0.600 23 H 0.059 0.941 24 H 0.040 0.960 25 H 0.035 0.965 26 H 0.021 0.979 27 H 0.265 0.735 28 H 0.007 0.993 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.576 -9.942 4.609 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.295 6.295 3 C 0.392 3.608 4 O -0.463 6.463 5 N -0.360 5.360 6 C 0.068 3.932 7 H 0.099 0.901 8 C -0.152 4.152 9 C -0.050 4.050 10 C -0.511 4.511 11 C -0.126 4.126 12 N -0.525 5.525 13 Si 0.717 3.283 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.192 1.192 17 C -0.026 4.026 18 C -0.156 4.156 19 H 0.080 0.920 20 H 0.115 0.885 21 H 0.079 0.921 22 H 0.233 0.767 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.862 -9.357 4.463 12.432 hybrid contribution 0.974 -0.432 0.349 1.121 sum -5.888 -9.790 4.812 12.396 Atomic orbital electron populations 1.23088 0.75178 1.02855 1.02575 1.86228 1.23714 1.32016 1.87582 1.18295 0.83963 0.81833 0.76716 1.90985 1.64656 1.34726 1.55958 1.45308 1.02300 1.11505 1.76839 1.21146 0.92706 0.80464 0.98908 0.90097 1.21906 0.94302 1.01166 0.97873 1.19705 0.96142 0.91568 0.97542 1.20052 0.93958 1.37585 0.99464 1.24857 0.98454 0.94658 0.94681 1.69837 1.28700 1.38911 1.15086 0.86659 0.83436 0.77667 0.80578 1.20412 1.21609 1.19178 1.19355 0.93735 0.90076 0.99424 1.22022 0.98633 1.01097 0.93823 0.92043 0.88468 0.92134 0.76664 0.92250 0.94119 0.94650 0.96070 0.92543 0.97483 0.92205 0.94573 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.64 10.56 101.05 1.07 1.71 16 2 O -0.38 -5.64 10.62 -40.32 -0.43 -6.07 16 3 C 0.64 11.45 8.71 54.05 0.47 11.92 16 4 O -0.57 -12.14 15.80 -19.28 -0.30 -12.44 16 5 N -0.70 -11.92 5.08 -58.77 -0.30 -12.22 16 6 C 0.17 3.35 2.35 -67.97 -0.16 3.19 16 7 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 8 C -0.11 -2.19 5.40 -26.63 -0.14 -2.34 16 9 C -0.01 -0.26 5.59 -27.49 -0.15 -0.41 16 10 C -0.49 -12.81 5.51 -98.92 -0.55 -13.36 16 11 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 12 N -0.89 -25.43 12.73 55.43 0.71 -24.72 16 13 Si 0.89 20.68 27.27 -169.99 -4.64 16.04 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -5.99 6.46 56.52 0.37 -5.63 16 17 C 0.01 0.31 5.97 -27.48 -0.16 0.14 16 18 C -0.12 -2.59 5.50 -26.63 -0.15 -2.73 16 19 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 20 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.40 5.63 8.71 -40.82 -0.36 5.28 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.78 4.78 -51.93 -0.25 0.53 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 1.66 7.07 -51.93 -0.37 1.29 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 256.94 15.07 3.87 3.87 Total: -1.00 -30.17 256.94 -5.30 -35.47 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.34 Total: -0.04 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 0.13 Total: 0.09 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.41 Total: -36.94 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.73 Total: -18.51 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.64 Total: 16.04 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.17 -5.30 -35.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193926308.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.864 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds