Wall clock time and date at job start Sun Mar 29 2020 22:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34640 * 117.00182 * 2 1 4 4 O 1.21514 * 119.99763 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99811 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99504 * 179.97438 * 5 3 2 7 7 H 1.09005 * 109.35538 * 35.17334 * 6 5 3 8 8 C 1.52957 * 109.41351 * 154.99655 * 6 5 3 9 9 C 1.53230 * 109.40528 * 183.70452 * 8 6 5 10 10 C 1.51262 * 108.53542 * 305.36889 * 9 8 6 11 11 C 1.37879 * 120.85543 * 231.37032 * 10 9 8 12 12 N 1.31512 * 120.00629 * 179.97438 * 11 10 9 13 13 Si 1.86806 * 119.99587 * 359.97438 * 11 10 9 14 14 H 1.48501 * 109.47016 * 89.99798 * 13 11 10 15 15 H 1.48498 * 109.46894 * 209.99936 * 13 11 10 16 16 H 1.48498 * 109.47107 * 330.00225 * 13 11 10 17 17 C 1.51276 * 118.29777 * 51.35075 * 10 9 8 18 18 C 1.52959 * 109.41223 * 275.34638 * 6 5 3 19 19 H 1.08996 * 109.46789 * 60.00407 * 1 2 3 20 20 H 1.09001 * 109.46921 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47054 * 300.00787 * 1 2 3 22 22 H 0.96991 * 120.00242 * 359.97438 * 5 3 2 23 23 H 1.08998 * 109.48115 * 63.72104 * 8 6 5 24 24 H 1.09002 * 109.49523 * 303.69145 * 8 6 5 25 25 H 1.09001 * 109.62403 * 185.65919 * 9 8 6 26 26 H 1.08996 * 109.62647 * 65.08627 * 9 8 6 27 27 H 0.96996 * 120.00254 * 180.02562 * 12 11 10 28 28 H 1.08991 * 109.62630 * 68.36686 * 17 10 9 29 29 H 1.09003 * 109.62166 * 188.93586 * 17 10 9 30 30 H 1.09000 * 109.48318 * 56.32391 * 18 6 5 31 31 H 1.08996 * 109.48280 * 296.27677 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0743 2.5754 -0.0011 7 1 3.4895 3.2791 0.5914 8 6 5.4702 2.4351 0.6082 9 6 6.1301 3.8154 0.6925 10 6 6.1110 4.4425 -0.6839 11 6 7.2625 4.9535 -1.2441 12 7 7.2269 5.4946 -2.4423 13 14 8.8733 4.8774 -0.3012 14 1 9.5758 3.6092 -0.6231 15 1 9.7279 6.0286 -0.6878 16 1 8.5966 4.9337 1.1566 17 6 4.7961 4.4941 -1.4302 18 6 4.1848 3.0891 -1.4376 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 3.9374 0.4566 -0.0005 23 1 6.0760 1.7802 -0.0181 24 1 5.3895 2.0090 1.6082 25 1 7.1604 3.7086 1.0319 26 1 5.5756 4.4443 1.3891 27 1 8.0370 5.8538 -2.8365 28 1 4.1183 5.1858 -0.9302 29 1 4.9695 4.8233 -2.4548 30 1 3.1927 3.1268 -1.8875 31 1 4.8210 2.4188 -2.0154 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193926308.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:05 Heat of formation + Delta-G solvation = -121.667064 kcal Electronic energy + Delta-G solvation = -14546.307228 eV Core-core repulsion = 12019.166666 eV Total energy + Delta-G solvation = -2527.140562 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.51299 -39.09551 -37.24219 -35.49607 -33.44526 -31.48653 -29.53672 -27.97441 -24.19579 -23.49870 -22.15477 -21.37815 -19.64412 -17.99877 -17.95228 -17.42346 -16.37292 -16.22157 -15.14898 -14.95500 -14.81564 -14.36899 -14.04881 -13.90917 -13.45548 -12.94581 -12.79354 -12.72938 -12.59201 -12.02184 -11.84139 -11.76947 -11.64044 -11.38264 -10.96653 -10.71947 -10.52666 -10.01550 -8.14738 -6.10963 1.25214 1.43721 1.46553 1.55448 1.76332 2.43842 3.11781 3.39237 3.97827 4.19036 4.38559 4.38991 4.46634 4.66996 4.70997 4.83026 4.97408 5.00558 5.05411 5.20323 5.24420 5.35904 5.52083 5.57764 5.65872 5.76315 5.81571 6.33856 6.48766 6.95323 7.35241 7.47664 8.96656 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.066386 B = 0.007403 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.675428 B = 3781.209223 C = 4018.624401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.374 6.374 3 C 0.640 3.360 4 O -0.612 6.612 5 N -0.691 5.691 6 C 0.181 3.819 7 H 0.063 0.937 8 C -0.105 4.105 9 C -0.016 4.016 10 C -0.503 4.503 11 C 0.020 3.980 12 N -0.934 5.934 13 Si 0.948 3.052 14 H -0.268 1.268 15 H -0.297 1.297 16 H -0.249 1.249 17 C 0.009 3.991 18 C -0.105 4.105 19 H 0.056 0.944 20 H 0.140 0.860 21 H 0.060 0.940 22 H 0.417 0.583 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.021 0.979 27 H 0.263 0.737 28 H -0.007 1.007 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.335 -12.154 6.330 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.288 6.288 3 C 0.393 3.607 4 O -0.503 6.503 5 N -0.349 5.349 6 C 0.078 3.922 7 H 0.081 0.919 8 C -0.143 4.143 9 C -0.054 4.054 10 C -0.522 4.522 11 C -0.179 4.179 12 N -0.574 5.574 13 Si 0.774 3.226 14 H -0.194 1.194 15 H -0.223 1.223 16 H -0.173 1.173 17 C -0.029 4.029 18 C -0.144 4.144 19 H 0.075 0.925 20 H 0.158 0.842 21 H 0.079 0.921 22 H 0.254 0.746 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.011 0.989 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.632 -11.628 6.205 14.755 hybrid contribution 0.748 0.250 -0.224 0.819 sum -5.885 -11.379 5.981 14.138 Atomic orbital electron populations 1.23493 0.72975 1.05640 1.02411 1.86246 1.25741 1.29840 1.86963 1.18408 0.84024 0.82215 0.76023 1.90969 1.65527 1.36314 1.57523 1.44939 1.02358 1.11156 1.76485 1.20757 0.93366 0.81464 0.96570 0.91923 1.21771 0.93164 0.99331 1.00063 1.19734 0.97210 0.93275 0.95169 1.20634 0.93659 1.36872 1.01050 1.25716 1.02088 0.94572 0.95479 1.69997 1.29460 1.40829 1.17080 0.85694 0.79173 0.77628 0.80116 1.19368 1.22341 1.17299 1.19296 0.94315 0.91921 0.97385 1.21823 0.97714 0.98996 0.95895 0.92520 0.84184 0.92110 0.74575 0.91333 0.90543 0.93692 0.96030 0.92794 0.98872 0.95561 0.95326 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.95 10.56 113.37 1.20 2.15 16 2 O -0.37 -10.08 10.62 -55.49 -0.59 -10.67 16 3 C 0.64 21.75 8.71 129.79 1.13 22.88 16 4 O -0.61 -25.41 15.80 19.80 0.31 -25.10 16 5 N -0.69 -21.75 5.08 -570.25 -2.90 -24.64 16 6 C 0.18 6.89 2.35 44.96 0.11 7.00 16 7 H 0.06 2.65 7.58 -2.38 -0.02 2.64 16 8 C -0.10 -3.70 5.40 30.66 0.17 -3.53 16 9 C -0.02 -0.68 5.59 30.10 0.17 -0.51 16 10 C -0.50 -26.17 5.51 -16.17 -0.09 -26.26 16 11 C 0.02 1.06 5.46 84.66 0.46 1.52 16 12 N -0.93 -54.97 12.73 21.45 0.27 -54.70 16 13 Si 0.95 41.83 27.27 68.60 1.87 43.71 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 16 H -0.25 -10.17 6.46 99.48 0.64 -9.53 16 17 C 0.01 0.47 5.97 30.11 0.18 0.65 16 18 C -0.11 -4.66 5.50 30.66 0.17 -4.50 16 19 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 20 H 0.14 1.52 8.14 -2.39 -0.02 1.51 16 21 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.42 10.31 8.71 -92.71 -0.81 9.50 16 23 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.04 1.84 4.78 -2.39 -0.01 1.82 16 26 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 28 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 29 H 0.03 1.51 7.07 -2.39 -0.02 1.50 16 30 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -65.80 256.94 2.72 -63.09 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.26 Total: 8.93 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 3.49 Total: -0.61 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -2.62 Total: -79.34 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.28 Total: -35.77 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.87 Total: 43.71 kcal Total: -65.80 2.72 -63.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193926308.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.581 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds