Wall clock time and date at job start Sun Mar 29 2020 22:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34634 * 117.00172 * 2 1 4 4 O 1.21502 * 120.00220 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99896 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00097 * 185.25896 * 5 3 2 7 7 C 1.50699 * 110.43603 * 297.94485 * 6 5 3 8 8 H 1.08005 * 120.00404 * 122.57240 * 7 6 5 9 9 C 1.37875 * 119.99867 * 302.57702 * 7 6 5 10 10 N 1.31515 * 120.00240 * 355.00070 * 9 7 6 11 11 Si 1.86799 * 119.99907 * 175.00085 * 9 7 6 12 12 H 1.48495 * 109.47346 * 60.00192 * 11 9 7 13 13 H 1.48506 * 109.46971 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47254 * 299.99503 * 11 9 7 15 15 C 1.54896 * 110.48508 * 60.62739 * 6 5 3 16 16 C 1.54882 * 102.74714 * 80.73832 * 15 6 5 17 17 C 1.54262 * 104.20031 * 37.94560 * 16 15 6 18 18 C 1.53880 * 106.59464 * 336.38690 * 17 16 15 19 19 H 1.08997 * 109.47314 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47208 * 300.00646 * 1 2 3 21 21 H 1.09001 * 109.47061 * 60.00367 * 1 2 3 22 22 H 0.97000 * 120.00155 * 5.25181 * 5 3 2 23 23 H 0.96999 * 120.00391 * 184.99914 * 10 9 7 24 24 H 1.08999 * 110.75462 * 322.42069 * 15 6 5 25 25 H 1.09002 * 110.75498 * 199.05159 * 15 6 5 26 26 H 1.08999 * 110.49011 * 279.26082 * 16 15 6 27 27 H 1.09010 * 110.48497 * 156.62098 * 16 15 6 28 28 H 1.08994 * 110.03763 * 95.66940 * 17 16 15 29 29 H 1.09001 * 110.03739 * 217.06106 * 17 16 15 30 30 H 1.08997 * 110.03209 * 119.28693 * 18 17 16 31 31 H 1.09002 * 110.03116 * 240.71930 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4016 2.2186 -0.0005 5 7 3.4091 1.2700 -0.0005 6 6 4.0747 2.5700 0.1158 7 6 3.7177 3.4504 -1.0541 8 1 3.2599 4.4139 -0.8850 9 6 3.9754 3.0258 -2.3402 10 7 4.6209 1.8982 -2.5436 11 14 3.4076 4.0523 -3.7940 12 1 4.0364 5.3958 -3.7270 13 1 3.8056 3.3825 -5.0583 14 1 1.9300 4.1946 -3.7525 15 6 3.6934 3.2566 1.4509 16 6 4.6304 2.5638 2.4712 17 6 5.9571 2.3836 1.7050 18 6 5.6037 2.3875 0.2073 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 3.9372 0.4601 -0.0778 23 1 4.8660 1.6353 -3.4446 24 1 2.6483 3.0693 1.6969 25 1 3.8950 4.3269 1.4061 26 1 4.2250 1.5956 2.7651 27 1 4.7778 3.1980 3.3455 28 1 6.6338 3.2076 1.9311 29 1 6.4199 1.4351 1.9776 30 1 6.1089 3.2135 -0.2933 31 1 5.8946 1.4406 -0.2474 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193942502.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:59 Heat of formation + Delta-G solvation = -91.160173 kcal Electronic energy + Delta-G solvation = -15231.837555 eV Core-core repulsion = 12706.019871 eV Total energy + Delta-G solvation = -2525.817684 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.35343 -37.47616 -34.95078 -32.77902 -31.77981 -27.93034 -27.64106 -26.48083 -23.94611 -20.93896 -19.59421 -18.73021 -17.31534 -16.65681 -15.48745 -15.29218 -14.64315 -14.59625 -13.87461 -13.12204 -12.99009 -12.55565 -12.04977 -11.72445 -11.32272 -10.97767 -10.74877 -10.57565 -10.47805 -10.33498 -10.08479 -9.90012 -9.61588 -9.48977 -9.24220 -9.14305 -8.42403 -7.52970 -6.01740 -4.05167 3.31483 3.38209 3.42161 3.47330 4.17834 4.46148 5.21201 5.54417 5.66450 5.68688 5.72497 5.75121 5.80806 5.99633 6.39373 6.42433 6.58043 6.69073 6.80934 6.82084 7.04003 7.14651 7.25632 7.27766 7.56531 7.90203 8.11069 8.31445 8.87430 9.00420 9.59929 9.75937 11.03657 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.017215 C = 0.011153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.962278 B = 1626.073056 C = 2509.827718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 O -0.393 6.393 3 C 0.637 3.363 4 O -0.573 6.573 5 N -0.663 5.663 6 C 0.309 3.691 7 C -0.499 4.499 8 H 0.060 0.940 9 C 0.073 3.927 10 N -0.882 5.882 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.277 1.277 15 C -0.126 4.126 16 C -0.125 4.125 17 C -0.129 4.129 18 C -0.097 4.097 19 H 0.087 0.913 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.385 0.615 23 H 0.260 0.740 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 -3.168 5.725 6.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 O -0.309 6.309 3 C 0.388 3.612 4 O -0.462 6.462 5 N -0.318 5.318 6 C 0.227 3.773 7 C -0.537 4.537 8 H 0.078 0.922 9 C -0.131 4.131 10 N -0.520 5.520 11 Si 0.719 3.281 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.165 4.165 16 C -0.162 4.162 17 C -0.167 4.167 18 C -0.135 4.135 19 H 0.105 0.895 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.218 0.782 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.206 -2.815 5.599 6.382 hybrid contribution -0.257 0.107 -1.051 1.088 sum -1.463 -2.707 4.548 5.491 Atomic orbital electron populations 1.22865 0.76902 1.01734 1.01869 1.86228 1.22440 1.33892 1.88321 1.18330 0.84411 0.81075 0.77355 1.90878 1.64722 1.34285 1.56321 1.45514 1.01065 1.11187 1.73992 1.18681 0.87809 0.78989 0.91778 1.21221 1.39827 1.02722 0.89978 0.92192 1.24942 0.94544 0.94749 0.98840 1.69909 1.38719 1.21803 1.21586 0.86665 0.79615 0.80259 0.81514 1.20241 1.21499 1.20215 1.22848 0.98645 0.99298 0.95702 1.22372 0.96493 0.99665 0.97701 1.22285 0.96832 0.99796 0.97790 1.22204 0.96805 1.02343 0.92186 0.89473 0.92866 0.92680 0.78200 0.93019 0.91864 0.91677 0.92873 0.93299 0.93022 0.93376 0.91222 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.01 10.56 101.05 1.07 2.08 16 2 O -0.39 -8.26 10.61 -40.31 -0.43 -8.69 16 3 C 0.64 15.47 8.05 54.05 0.44 15.91 16 4 O -0.57 -15.42 13.83 -19.27 -0.27 -15.68 16 5 N -0.66 -15.61 4.45 -51.99 -0.23 -15.84 16 6 C 0.31 7.39 0.32 -131.31 -0.04 7.35 16 7 C -0.50 -13.68 6.73 -34.44 -0.23 -13.91 16 8 H 0.06 1.71 7.78 -52.48 -0.41 1.30 16 9 C 0.07 1.99 5.28 -17.82 -0.09 1.90 16 10 N -0.88 -24.07 11.97 55.43 0.66 -23.41 16 11 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 15 C -0.13 -2.75 5.67 -24.74 -0.14 -2.89 16 16 C -0.12 -2.25 6.79 -25.08 -0.17 -2.42 16 17 C -0.13 -2.30 6.80 -25.61 -0.17 -2.48 16 18 C -0.10 -2.09 5.16 -25.61 -0.13 -2.22 16 19 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.39 8.56 8.38 -40.82 -0.34 8.22 16 23 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 24 H 0.06 1.47 6.41 -51.93 -0.33 1.14 16 25 H 0.06 1.40 8.05 -51.93 -0.42 0.98 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.59 7.83 -51.93 -0.41 1.19 16 31 H 0.06 1.43 7.57 -51.93 -0.39 1.03 16 LS Contribution 258.41 15.07 3.89 3.89 Total: -1.00 -30.06 258.41 -5.27 -35.33 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.39 Total: 4.16 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 0.52 Total: 3.32 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.43 Total: -39.25 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.69 Total: -24.37 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.06 -5.27 -35.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193942502.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.828 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds