Wall clock time and date at job start Sun Mar 29 2020 22:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34634 * 117.00172 * 2 1 4 4 O 1.21502 * 120.00220 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99896 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00097 * 185.25896 * 5 3 2 7 7 C 1.50699 * 110.43603 * 297.94485 * 6 5 3 8 8 H 1.08005 * 120.00404 * 122.57240 * 7 6 5 9 9 C 1.37875 * 119.99867 * 302.57702 * 7 6 5 10 10 N 1.31515 * 120.00240 * 355.00070 * 9 7 6 11 11 Si 1.86799 * 119.99907 * 175.00085 * 9 7 6 12 12 H 1.48495 * 109.47346 * 60.00192 * 11 9 7 13 13 H 1.48506 * 109.46971 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47254 * 299.99503 * 11 9 7 15 15 C 1.54896 * 110.48508 * 60.62739 * 6 5 3 16 16 C 1.54882 * 102.74714 * 80.73832 * 15 6 5 17 17 C 1.54262 * 104.20031 * 37.94560 * 16 15 6 18 18 C 1.53880 * 106.59464 * 336.38690 * 17 16 15 19 19 H 1.08997 * 109.47314 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47208 * 300.00646 * 1 2 3 21 21 H 1.09001 * 109.47061 * 60.00367 * 1 2 3 22 22 H 0.97000 * 120.00155 * 5.25181 * 5 3 2 23 23 H 0.96999 * 120.00391 * 184.99914 * 10 9 7 24 24 H 1.08999 * 110.75462 * 322.42069 * 15 6 5 25 25 H 1.09002 * 110.75498 * 199.05159 * 15 6 5 26 26 H 1.08999 * 110.49011 * 279.26082 * 16 15 6 27 27 H 1.09010 * 110.48497 * 156.62098 * 16 15 6 28 28 H 1.08994 * 110.03763 * 95.66940 * 17 16 15 29 29 H 1.09001 * 110.03739 * 217.06106 * 17 16 15 30 30 H 1.08997 * 110.03209 * 119.28693 * 18 17 16 31 31 H 1.09002 * 110.03116 * 240.71930 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4016 2.2186 -0.0005 5 7 3.4091 1.2700 -0.0005 6 6 4.0747 2.5700 0.1158 7 6 3.7177 3.4504 -1.0541 8 1 3.2599 4.4139 -0.8850 9 6 3.9754 3.0258 -2.3402 10 7 4.6209 1.8982 -2.5436 11 14 3.4076 4.0523 -3.7940 12 1 4.0364 5.3958 -3.7270 13 1 3.8056 3.3825 -5.0583 14 1 1.9300 4.1946 -3.7525 15 6 3.6934 3.2566 1.4509 16 6 4.6304 2.5638 2.4712 17 6 5.9571 2.3836 1.7050 18 6 5.6037 2.3875 0.2073 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 3.9372 0.4601 -0.0778 23 1 4.8660 1.6353 -3.4446 24 1 2.6483 3.0693 1.6969 25 1 3.8950 4.3269 1.4061 26 1 4.2250 1.5956 2.7651 27 1 4.7778 3.1980 3.3455 28 1 6.6338 3.2076 1.9311 29 1 6.4199 1.4351 1.9776 30 1 6.1089 3.2135 -0.2933 31 1 5.8946 1.4406 -0.2474 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193942502.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:59 Heat of formation + Delta-G solvation = -111.459326 kcal Electronic energy + Delta-G solvation = -15232.717792 eV Core-core repulsion = 12706.019871 eV Total energy + Delta-G solvation = -2526.697921 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.16855 -39.17476 -36.74744 -34.67440 -33.73806 -29.66919 -29.29814 -28.00532 -25.85874 -22.70098 -21.17437 -20.57974 -19.09430 -18.63606 -17.20630 -17.06670 -16.62141 -16.22286 -15.57479 -14.78083 -14.71842 -14.19871 -13.67013 -13.63140 -12.95693 -12.80593 -12.72445 -12.48861 -12.17962 -11.88845 -11.74591 -11.57175 -11.36373 -11.19140 -11.13318 -11.02739 -10.48124 -9.44847 -8.09257 -6.17269 1.34795 1.38471 1.45226 1.73341 2.28499 2.42963 3.18338 3.88256 4.10163 4.14249 4.28434 4.41952 4.47142 4.68994 4.82674 4.97534 5.01128 5.08510 5.15739 5.27754 5.37046 5.39825 5.55674 5.65580 5.73127 5.85717 6.20978 6.37786 6.79987 7.08046 7.49217 7.91166 8.93149 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.017215 C = 0.011153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.962278 B = 1626.073056 C = 2509.827718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 O -0.394 6.394 3 C 0.632 3.368 4 O -0.607 6.607 5 N -0.658 5.658 6 C 0.296 3.704 7 C -0.518 4.518 8 H 0.036 0.964 9 C 0.037 3.963 10 N -0.892 5.892 11 Si 0.934 3.066 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.293 1.293 15 C -0.125 4.125 16 C -0.113 4.113 17 C -0.119 4.119 18 C -0.089 4.089 19 H 0.135 0.865 20 H 0.058 0.942 21 H 0.044 0.956 22 H 0.392 0.608 23 H 0.260 0.740 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 -3.994 6.612 7.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.309 6.309 3 C 0.384 3.616 4 O -0.499 6.499 5 N -0.313 5.313 6 C 0.214 3.786 7 C -0.557 4.557 8 H 0.054 0.946 9 C -0.165 4.165 10 N -0.530 5.530 11 Si 0.761 3.239 12 H -0.193 1.193 13 H -0.205 1.205 14 H -0.219 1.219 15 C -0.164 4.164 16 C -0.151 4.151 17 C -0.157 4.157 18 C -0.128 4.128 19 H 0.153 0.847 20 H 0.077 0.923 21 H 0.063 0.937 22 H 0.225 0.775 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.713 -3.663 6.487 7.484 hybrid contribution -0.506 0.343 -1.331 1.465 sum -1.220 -3.319 5.156 6.252 Atomic orbital electron populations 1.23283 0.74271 1.04854 1.01653 1.86219 1.24952 1.31837 1.87852 1.18485 0.84598 0.81537 0.76935 1.90851 1.65460 1.35727 1.57816 1.45352 1.01133 1.11307 1.73534 1.18817 0.89277 0.78885 0.91616 1.21431 1.39821 1.02662 0.91805 0.94574 1.25424 0.94879 0.95811 1.00416 1.69954 1.39118 1.22213 1.21765 0.85996 0.78084 0.79896 0.79882 1.19278 1.20469 1.21948 1.22760 0.98402 0.99215 0.96015 1.22308 0.95314 0.99962 0.97484 1.22213 0.97097 1.01949 0.94433 1.22039 0.94785 1.00888 0.95057 0.84661 0.92339 0.93740 0.77461 0.93054 0.93940 0.92254 0.92344 0.90515 0.91190 0.90963 0.93202 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.67 10.56 113.37 1.20 2.86 16 2 O -0.39 -16.09 10.61 -55.43 -0.59 -16.68 16 3 C 0.63 30.66 8.05 129.79 1.04 31.71 16 4 O -0.61 -33.10 13.83 19.84 0.27 -32.83 16 5 N -0.66 -30.82 4.45 -548.83 -2.44 -33.27 16 6 C 0.30 14.15 0.32 3.93 0.00 14.15 16 7 C -0.52 -28.92 6.73 25.60 0.17 -28.74 16 8 H 0.04 2.13 7.78 -2.91 -0.02 2.10 16 9 C 0.04 2.02 5.28 84.65 0.45 2.46 16 10 N -0.89 -48.66 11.97 21.45 0.26 -48.40 16 11 Si 0.93 45.31 29.54 68.60 2.03 47.34 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 15 C -0.13 -5.39 5.67 31.89 0.18 -5.21 16 16 C -0.11 -3.77 6.79 31.67 0.21 -3.56 16 17 C -0.12 -3.88 6.80 31.32 0.21 -3.67 16 18 C -0.09 -3.76 5.16 31.32 0.16 -3.60 16 19 H 0.14 2.86 8.14 -2.39 -0.02 2.84 16 20 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.39 17.14 8.38 -92.71 -0.78 16.37 16 23 H 0.26 13.77 8.32 -92.71 -0.77 13.00 16 24 H 0.04 1.98 6.41 -2.39 -0.02 1.96 16 25 H 0.06 2.56 8.05 -2.39 -0.02 2.54 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.05 2.27 7.83 -2.39 -0.02 2.25 16 31 H 0.05 2.37 7.57 -2.39 -0.02 2.35 16 Total: -1.00 -64.55 258.41 3.50 -61.05 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.34 Total: 16.38 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 3.63 Total: 6.41 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -2.19 Total: -81.67 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -0.31 Total: -49.51 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -64.55 3.50 -61.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193942502.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.408 kcal (2) G-P(sol) polarization free energy of solvation -64.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds