Wall clock time and date at job start Sun Mar 29 2020 22:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53929 * 113.73546 * 278.76330 * 9 7 2 11 11 N 1.48181 * 86.10389 * 221.96025 * 10 9 7 12 12 C 1.46904 * 111.07114 * 137.51831 * 11 10 9 13 13 C 1.53007 * 109.46668 * 90.56996 * 12 11 10 14 14 C 1.53002 * 109.46582 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46878 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47375 * 179.97438 * 15 14 13 17 17 O 1.42900 * 109.47279 * 179.97438 * 16 15 14 18 18 C 1.47959 * 90.79999 * 24.60296 * 11 10 9 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09004 * 112.93881 * 50.33534 * 9 7 2 21 21 H 1.09002 * 113.76143 * 336.24436 * 10 9 7 22 22 H 1.09000 * 113.75970 * 107.60487 * 10 9 7 23 23 H 1.09001 * 109.47248 * 210.56324 * 12 11 10 24 24 H 1.09000 * 109.47229 * 330.57166 * 12 11 10 25 25 H 1.09001 * 109.46737 * 299.99640 * 13 12 11 26 26 H 1.09000 * 109.47157 * 60.00126 * 13 12 11 27 27 H 1.09001 * 109.47194 * 299.99242 * 14 13 12 28 28 H 1.09000 * 109.47712 * 59.99716 * 14 13 12 29 29 H 1.09001 * 109.46422 * 299.99510 * 15 14 13 30 30 H 1.09000 * 109.47348 * 59.99289 * 15 14 13 31 31 H 1.08999 * 109.46939 * 299.99756 * 16 15 14 32 32 H 1.09009 * 109.47179 * 59.99201 * 16 15 14 33 33 H 0.96700 * 113.99359 * 179.97438 * 17 16 15 34 34 H 1.08999 * 113.75755 * 221.09101 * 18 11 10 35 35 H 1.08993 * 113.76352 * 89.71798 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 0.7547 -2.9293 1.3905 11 7 1.1885 -4.2947 1.0119 12 6 1.8761 -4.9587 2.1274 13 6 0.8566 -5.7294 2.9686 14 6 1.5726 -6.4204 4.1308 15 6 0.5532 -7.1916 4.9717 16 6 1.2693 -7.8832 6.1335 17 8 0.3171 -8.6030 6.9192 18 6 2.1610 -3.7399 0.0445 19 1 -0.4849 0.8400 0.0004 20 1 0.4840 -2.5461 -0.7748 21 1 1.3264 -2.4991 2.2128 22 1 -0.3227 -2.8304 1.5225 23 1 2.6207 -5.6512 1.7347 24 1 2.3679 -4.2100 2.7484 25 1 0.1120 -5.0369 3.3613 26 1 0.3648 -6.4781 2.3476 27 1 2.3175 -7.1129 3.7385 28 1 2.0642 -5.6715 4.7517 29 1 -0.1919 -6.4995 5.3640 30 1 0.0620 -7.9406 4.3505 31 1 2.0142 -8.5753 5.7408 32 1 1.7609 -7.1345 6.7548 33 1 0.7018 -9.0676 7.6750 34 1 2.2049 -4.2875 -0.8969 35 1 3.1448 -3.5473 0.4722 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204748022.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:02 Heat of formation + Delta-G solvation = -65.335867 kcal Electronic energy + Delta-G solvation = -13909.665472 eV Core-core repulsion = 11520.800708 eV Total energy + Delta-G solvation = -2388.864763 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.45145 -38.19238 -36.14241 -34.63299 -32.21589 -29.30509 -26.88306 -26.70139 -24.39423 -22.17206 -21.90018 -20.41157 -18.60816 -18.19581 -17.01211 -16.71180 -16.30229 -15.85415 -15.64295 -15.12357 -14.63865 -14.01022 -13.84268 -13.44599 -13.13252 -12.91303 -12.85347 -12.74278 -12.36415 -12.28708 -11.85446 -11.83727 -11.44940 -11.41178 -11.07913 -10.86877 -10.86523 -10.50960 -9.57461 -8.15208 -6.27436 1.42478 1.44017 1.52033 2.42109 3.12305 3.14516 3.44407 3.92918 4.08228 4.11556 4.24126 4.30865 4.43544 4.52146 4.55275 4.62653 4.69688 4.76543 4.86923 4.89945 4.92846 4.99010 5.07843 5.21409 5.24323 5.34632 5.45631 5.61654 5.62405 5.84797 6.29154 6.42386 6.81412 6.91394 7.41147 8.94135 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.054823 B = 0.004679 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.615039 B = 5982.225027 C = 6140.457495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.018 3.982 10 C 0.025 3.975 11 N -0.494 5.494 12 C 0.021 3.979 13 C -0.102 4.102 14 C -0.105 4.105 15 C -0.120 4.120 16 C 0.075 3.925 17 O -0.599 6.599 18 C 0.012 3.988 19 H 0.263 0.737 20 H 0.024 0.976 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.033 0.967 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.397 0.603 34 H 0.079 0.921 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.246 -12.997 10.542 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.105 4.105 11 N -0.216 5.216 12 C -0.107 4.107 13 C -0.140 4.140 14 C -0.143 4.143 15 C -0.158 4.158 16 C -0.002 4.002 17 O -0.408 6.408 18 C -0.117 4.117 19 H 0.072 0.928 20 H 0.042 0.958 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.098 0.902 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.247 0.753 34 H 0.097 0.903 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.211 -13.146 9.900 16.987 hybrid contribution 1.007 1.388 0.635 1.829 sum 5.218 -11.759 10.535 16.628 Atomic orbital electron populations 1.70091 1.07567 1.27670 1.50736 1.25852 0.95633 1.02768 0.94315 0.85600 0.78351 0.78609 0.79041 1.19327 1.21018 1.19399 1.21431 0.93071 0.91637 1.51322 0.92248 1.20306 0.94173 0.92418 0.93163 1.23841 0.98687 0.88330 0.99599 1.68395 1.26691 1.15561 1.10994 1.22685 0.96830 0.98068 0.93140 1.21379 0.97657 0.98724 0.96279 1.21382 0.97852 0.99215 0.95826 1.21497 0.98708 0.99238 0.96349 1.22235 0.90795 0.94887 0.92296 1.86435 1.38868 1.69964 1.45558 1.23919 0.95020 0.95993 0.96757 0.92836 0.95798 0.93381 0.93364 0.90233 0.94818 0.93708 0.91740 0.90351 0.91520 0.92649 0.91868 0.92133 0.92709 0.75289 0.90293 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.67 13.29 21.45 0.28 -54.38 16 2 C 0.01 0.76 5.46 84.66 0.46 1.23 16 3 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.54 -29.75 8.77 25.60 0.22 -29.53 16 8 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 9 C 0.02 0.96 3.60 -10.89 -0.04 0.92 16 10 C 0.02 1.18 7.53 86.37 0.65 1.83 16 11 N -0.49 -20.24 6.16 -907.37 -5.59 -25.83 16 12 C 0.02 0.70 4.80 86.30 0.41 1.11 16 13 C -0.10 -2.88 5.52 30.60 0.17 -2.71 16 14 C -0.10 -2.21 5.21 30.60 0.16 -2.05 16 15 C -0.12 -2.52 5.58 30.59 0.17 -2.35 16 16 C 0.08 1.26 7.05 71.98 0.51 1.77 16 17 O -0.60 -11.06 13.66 -148.98 -2.04 -13.09 16 18 C 0.01 0.49 7.50 86.41 0.65 1.14 16 19 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 20 H 0.02 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.05 2.32 7.44 -2.39 -0.02 2.30 16 22 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 23 H 0.08 2.28 8.08 -2.39 -0.02 2.26 16 24 H 0.03 1.13 7.39 -2.39 -0.02 1.11 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 33 H 0.40 3.28 9.12 -74.06 -0.68 2.61 16 34 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.06 2.53 7.87 -2.39 -0.02 2.51 16 Total: -1.00 -63.98 290.57 -1.58 -65.56 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.37 Total: 10.98 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 3.37 Total: -28.64 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -5.30 Total: -80.21 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -2.04 Total: -13.09 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -63.98 -1.58 -65.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204748022.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.224 kcal (2) G-P(sol) polarization free energy of solvation -63.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds