Wall clock time and date at job start Sun Mar 29 2020 22:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46827 * 2 1 4 4 C 1.52997 * 109.47356 * 120.00213 * 2 1 3 5 5 N 1.46904 * 109.47012 * 240.00619 * 2 1 3 6 6 C 1.47475 * 110.99923 * 156.74426 * 5 2 1 7 7 C 1.53516 * 87.93219 * 221.29617 * 6 5 2 8 8 O 1.42902 * 114.16836 * 272.37941 * 7 6 5 9 9 C 1.42904 * 114.00034 * 243.84114 * 8 7 6 10 10 C 1.50698 * 109.47018 * 179.97438 * 9 8 7 11 11 H 1.07993 * 120.00137 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99535 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00054 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99738 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47299 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47086 * 119.99970 * 14 12 10 17 17 H 1.48496 * 109.47111 * 239.99919 * 14 12 10 18 18 C 1.47482 * 111.00064 * 60.77197 * 5 2 1 19 19 H 1.08997 * 109.47441 * 60.00146 * 1 2 3 20 20 H 1.09000 * 109.46656 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47047 * 299.99214 * 1 2 3 22 22 H 1.09006 * 109.46966 * 50.31049 * 3 2 1 23 23 H 1.08998 * 109.46925 * 170.30684 * 3 2 1 24 24 H 1.08999 * 109.47368 * 290.31007 * 3 2 1 25 25 H 1.09000 * 109.47263 * 60.00342 * 4 2 1 26 26 H 1.08995 * 109.47204 * 180.02562 * 4 2 1 27 27 H 1.08999 * 109.47137 * 300.00019 * 4 2 1 28 28 H 1.09002 * 113.47469 * 336.05569 * 6 5 2 29 29 H 1.08998 * 113.47995 * 106.52569 * 6 5 2 30 30 H 1.08994 * 114.17202 * 139.66879 * 7 6 5 31 31 H 1.08998 * 109.46723 * 299.99850 * 9 8 7 32 32 H 1.08996 * 109.46912 * 59.99447 * 9 8 7 33 33 H 0.97002 * 119.99888 * 180.02562 * 13 12 10 34 34 H 1.09004 * 113.47112 * 253.46716 * 18 5 2 35 35 H 1.09001 * 113.47527 * 23.87197 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 2.0197 -0.6924 -1.1995 6 6 3.3884 -0.2599 -1.5377 7 6 2.9610 -0.2488 -3.0121 8 8 3.1134 -1.5056 -3.6749 9 6 4.0614 -1.4877 -4.7441 10 6 4.1412 -2.8573 -5.3676 11 1 3.5290 -3.6609 -4.9859 12 6 4.9952 -3.0841 -6.4261 13 7 5.7403 -2.1053 -6.8912 14 14 5.0936 -4.7816 -7.1994 15 1 4.1607 -5.6999 -6.4984 16 1 4.7177 -4.6948 -8.6335 17 1 6.4804 -5.2995 -7.0818 18 6 1.5620 -0.0129 -2.4259 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 1.5422 2.0038 0.7909 23 1 3.1161 1.4474 0.1730 24 1 1.8248 1.9040 -0.9637 25 1 1.6768 -1.7490 1.2491 26 1 3.1300 -0.7209 1.2494 27 1 1.6768 -0.2075 2.1392 28 1 3.6397 0.7278 -1.1511 29 1 4.1485 -1.0077 -1.3115 30 1 3.3528 0.5923 -3.5840 31 1 3.7474 -0.7635 -5.4959 32 1 5.0408 -1.2075 -4.3566 33 1 6.3408 -2.2648 -7.6361 34 1 0.7741 -0.5515 -2.9524 35 1 1.3248 1.0404 -2.2759 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205609791.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:39 Heat of formation + Delta-G solvation = -6.207373 kcal Electronic energy + Delta-G solvation = -14637.281811 eV Core-core repulsion = 12250.981052 eV Total energy + Delta-G solvation = -2386.300760 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.56076 -36.44217 -33.99041 -32.48485 -27.86697 -27.46689 -27.45787 -25.94558 -25.02449 -22.37251 -20.16640 -18.37026 -16.70020 -16.11090 -15.67734 -14.84864 -14.67774 -14.25393 -13.67351 -13.57174 -13.46471 -12.90508 -12.33973 -12.08179 -11.84375 -11.80479 -11.44720 -11.29060 -11.00390 -10.93913 -10.77854 -10.73179 -10.32666 -10.23452 -9.86421 -9.09067 -8.77829 -8.42438 -8.11785 -6.09804 -4.11013 3.30989 3.37387 3.44626 4.12659 4.38246 4.73716 4.81584 4.87065 5.04197 5.18019 5.21990 5.27353 5.36779 5.50090 5.64373 5.74078 5.76877 5.78806 5.86794 5.95369 6.10790 6.11628 6.15025 6.23314 6.29155 6.42689 6.68351 7.11471 7.41144 7.43622 7.82688 8.17120 8.60226 9.03479 9.53865 11.01846 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.062849 B = 0.005823 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.405027 B = 4807.756022 C = 4922.473270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.060 3.940 3 C -0.183 4.183 4 C -0.130 4.130 5 N -0.445 5.445 6 C -0.037 4.037 7 C 0.069 3.931 8 O -0.358 6.358 9 C 0.192 3.808 10 C -0.513 4.513 11 H 0.068 0.932 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.908 3.092 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.282 1.282 18 C -0.013 4.013 19 H 0.054 0.946 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.263 0.737 34 H 0.088 0.912 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.134 7.259 12.592 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.030 4.030 3 C -0.241 4.241 4 C -0.188 4.188 5 N -0.167 5.167 6 C -0.166 4.166 7 C 0.008 3.992 8 O -0.277 6.277 9 C 0.118 3.882 10 C -0.551 4.551 11 H 0.086 0.914 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.735 3.265 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.142 4.142 19 H 0.073 0.927 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.278 6.404 12.664 15.949 hybrid contribution 0.486 0.379 -0.551 0.827 sum -6.793 6.784 12.114 15.456 Atomic orbital electron populations 1.21830 0.93878 1.02482 1.01343 1.21591 0.95703 0.92132 0.93615 1.22568 1.01773 0.97499 1.02305 1.21702 1.01000 1.00740 0.95335 1.69270 1.04222 1.43452 0.99769 1.24672 0.93774 1.00764 0.97351 1.22859 0.94781 0.89565 0.91964 1.87959 1.63266 1.27120 1.49307 1.20323 0.86543 0.97977 0.83378 1.21098 1.23336 0.95560 1.15090 0.91410 1.24943 0.95198 0.97809 0.96543 1.69974 1.25782 1.31791 1.26342 0.86281 0.77935 0.83436 0.78865 1.19430 1.20857 1.20847 1.24234 0.99505 0.98052 0.92367 0.92654 0.91833 0.92589 0.92237 0.91743 0.91916 0.91887 0.92763 0.92818 0.90203 0.89484 0.91278 0.97613 0.97620 0.92734 0.89348 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.37 37.16 0.31 -1.24 16 2 C 0.06 0.75 0.73 -131.60 -0.10 0.65 16 3 C -0.18 -1.98 7.10 37.16 0.26 -1.71 16 4 C -0.13 -1.53 8.66 37.16 0.32 -1.21 16 5 N -0.44 -7.17 6.14 -228.88 -1.41 -8.58 16 6 C -0.04 -0.60 7.07 -7.55 -0.05 -0.66 16 7 C 0.07 1.31 4.65 -26.20 -0.12 1.19 16 8 O -0.36 -8.90 10.38 -35.23 -0.37 -9.26 16 9 C 0.19 5.32 5.53 36.00 0.20 5.52 16 10 C -0.51 -15.31 9.43 -34.44 -0.32 -15.63 16 11 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 14 Si 0.91 22.07 29.54 -169.99 -5.02 17.05 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C -0.01 -0.20 6.12 -7.55 -0.05 -0.25 16 19 H 0.05 0.62 7.08 -51.93 -0.37 0.25 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 23 H 0.06 0.69 6.39 -51.93 -0.33 0.36 16 24 H 0.06 0.68 5.75 -51.93 -0.30 0.38 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.65 8.01 -51.93 -0.42 0.24 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.09 4.93 -51.93 -0.26 0.84 16 29 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.07 1.25 7.88 -51.93 -0.41 0.84 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.07 0.97 5.52 -51.93 -0.29 0.69 16 LS Contribution 278.73 15.07 4.20 4.20 Total: -1.00 -31.22 278.73 -7.21 -38.43 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.71 Total: -3.74 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 0.36 Total: -11.81 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: -0.67 Total: -34.88 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.37 Total: -9.26 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.22 -7.21 -38.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205609791.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.227 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds