Wall clock time and date at job start Sun Mar 29 2020 22:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45193 * 109.47483 * 2 1 4 4 C 1.34230 * 117.00163 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00132 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.46904 * 109.46950 * 179.97438 * 6 4 3 8 8 C 1.47959 * 110.99462 * 170.00406 * 7 6 4 9 9 C 1.53940 * 86.17699 * 222.41626 * 8 7 6 10 10 C 1.50706 * 113.72960 * 138.08084 * 9 8 7 11 11 H 1.07995 * 120.00167 * 1.62264 * 10 9 8 12 12 C 1.37879 * 119.99394 * 181.89962 * 10 9 8 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47405 * 60.00219 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 C 1.48181 * 111.07114 * 70.57167 * 7 6 4 19 19 H 1.09001 * 109.46524 * 300.00416 * 1 2 3 20 20 H 1.09000 * 109.46814 * 59.99894 * 1 2 3 21 21 H 1.08989 * 109.47409 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47202 * 239.99406 * 2 1 3 23 23 H 1.09004 * 109.47176 * 119.99765 * 2 1 3 24 24 H 1.08999 * 109.46740 * 60.00462 * 6 4 3 25 25 H 1.08998 * 109.47166 * 300.00242 * 6 4 3 26 26 H 1.08999 * 113.75755 * 108.10617 * 8 7 6 27 27 H 1.08993 * 113.76352 * 336.73314 * 8 7 6 28 28 H 1.09004 * 113.73426 * 269.25544 * 9 8 7 29 29 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 30 30 H 1.09002 * 113.76007 * 23.23287 * 18 7 6 31 31 H 1.09000 * 113.82508 * 251.80992 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9209 2.9373 -0.0012 7 7 5.3879 2.8603 -0.0010 8 6 5.9886 4.1909 -0.2414 9 6 6.9738 3.4635 -1.1742 10 6 7.2492 4.2010 -2.4593 11 1 6.7897 5.1615 -2.6398 12 6 8.0834 3.6468 -3.4069 13 7 8.6383 2.4744 -3.1895 14 14 8.4254 4.5613 -4.9994 15 1 9.0518 5.8722 -4.6928 16 1 9.3457 3.7578 -5.8437 17 1 7.1502 4.7803 -5.7282 18 6 5.8959 2.3725 -1.3048 19 1 -0.3632 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0275 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.5853 3.4696 0.8888 25 1 3.5846 3.4692 -0.8911 26 1 6.4588 4.6262 0.6404 27 1 5.3259 4.8851 -0.7580 28 1 7.8821 3.1255 -0.6753 29 1 9.2249 2.0844 -3.8564 30 1 5.2059 2.5336 -2.1331 31 1 6.2920 1.3575 -1.2711 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207409699.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:25 Heat of formation + Delta-G solvation = -55.642335 kcal Electronic energy + Delta-G solvation = -14160.504698 eV Core-core repulsion = 11636.227183 eV Total energy + Delta-G solvation = -2524.277515 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.25922 -38.51425 -36.21147 -32.74473 -31.83706 -30.13309 -26.32397 -24.95323 -23.76558 -22.45042 -20.47583 -18.62012 -17.41099 -16.76364 -16.43583 -15.88399 -14.89458 -14.55265 -14.08345 -13.90475 -13.36415 -12.91401 -12.62276 -12.10520 -11.86359 -11.70890 -11.58214 -11.38057 -10.96346 -10.76916 -10.44436 -10.40486 -10.11356 -9.69539 -9.24578 -9.01939 -8.45028 -7.95272 -6.03981 -4.09645 2.56582 2.81007 3.30439 3.35926 3.37490 4.40340 4.82643 4.87019 4.88497 5.01178 5.22627 5.26252 5.49675 5.58157 5.65702 5.69166 5.85460 5.99341 6.31137 6.43306 6.59263 6.62753 6.72286 7.12877 7.26210 7.71607 7.85552 7.98043 8.15367 8.35483 8.92620 9.55338 11.05379 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047639 B = 0.006411 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.616547 B = 4366.149876 C = 4540.158796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.368 6.368 4 C 0.460 3.540 5 O -0.486 6.486 6 C 0.030 3.970 7 N -0.480 5.480 8 C 0.000 4.000 9 C 0.039 3.961 10 C -0.522 4.522 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.884 5.884 14 Si 0.892 3.108 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.020 3.980 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.105 0.895 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.263 0.737 30 H 0.051 0.949 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.247 -1.305 5.006 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.286 6.286 4 C 0.302 3.698 5 O -0.370 6.370 6 C -0.099 4.099 7 N -0.204 5.204 8 C -0.128 4.128 9 C 0.019 3.981 10 C -0.560 4.560 11 H 0.076 0.924 12 C -0.136 4.136 13 N -0.521 5.521 14 Si 0.719 3.281 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.108 4.108 19 H 0.084 0.916 20 H 0.084 0.916 21 H 0.095 0.905 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.123 0.877 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.791 -2.148 5.530 14.100 hybrid contribution -0.203 0.611 -1.634 1.757 sum -12.994 -1.538 3.896 13.653 Atomic orbital electron populations 1.21789 0.92930 1.02691 1.03360 1.22939 0.95027 0.80814 1.02520 1.86491 1.25319 1.31957 1.84804 1.23817 0.80029 0.93186 0.72812 1.90671 1.60076 1.42777 1.43494 1.22260 0.94001 0.89849 1.03794 1.68622 1.01776 1.15438 1.34569 1.24170 0.98389 0.90577 0.99642 1.20334 0.93017 0.91031 0.93674 1.21032 1.28672 1.04917 1.01378 0.92404 1.25022 0.95283 0.94872 0.98450 1.69966 1.30836 1.16244 1.35075 0.86672 0.78191 0.79850 0.83357 1.20119 1.21237 1.20290 1.24102 0.98222 1.01748 0.86748 0.91623 0.91554 0.90481 0.91377 0.91443 0.87696 0.90586 0.91041 0.92268 0.92083 0.92760 0.93052 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 37.16 0.38 -0.93 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.37 -5.57 10.22 -39.26 -0.40 -5.97 16 4 C 0.46 8.25 7.77 36.01 0.28 8.53 16 5 O -0.49 -10.32 15.30 -18.75 -0.29 -10.61 16 6 C 0.03 0.52 5.42 -4.97 -0.03 0.49 16 7 N -0.48 -10.09 5.95 -239.60 -1.42 -11.52 16 8 C 0.00 0.01 7.53 -2.76 -0.02 -0.02 16 9 C 0.04 0.98 3.60 -90.84 -0.33 0.65 16 10 C -0.52 -14.19 8.77 -34.44 -0.30 -14.49 16 11 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 12 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 13 N -0.88 -25.84 13.29 55.43 0.74 -25.10 16 14 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.02 0.49 6.33 -2.64 -0.02 0.47 16 19 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 20 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.08 0.52 8.14 -51.94 -0.42 0.09 16 22 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 25 H 0.08 1.24 7.70 -51.93 -0.40 0.84 16 26 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.06 1.15 7.74 -51.93 -0.40 0.75 16 28 H 0.06 1.70 8.14 -51.93 -0.42 1.27 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.05 1.25 7.74 -51.93 -0.40 0.84 16 31 H 0.07 1.98 8.10 -51.93 -0.42 1.56 16 LS Contribution 269.49 15.07 4.06 4.06 Total: -1.00 -30.73 269.49 -6.79 -37.51 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.55 Total: -1.88 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 0.10 Total: -2.55 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.69 Total: -36.62 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.69 Total: -16.58 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.73 -6.79 -37.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207409699.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.131 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds