Wall clock time and date at job start Sun Mar 29 2020 22:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45193 * 109.47483 * 2 1 4 4 C 1.34230 * 117.00163 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00132 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.46904 * 109.46950 * 179.97438 * 6 4 3 8 8 C 1.47959 * 110.99462 * 170.00406 * 7 6 4 9 9 C 1.53940 * 86.17699 * 222.41626 * 8 7 6 10 10 C 1.50706 * 113.72960 * 138.08084 * 9 8 7 11 11 H 1.07995 * 120.00167 * 1.62264 * 10 9 8 12 12 C 1.37879 * 119.99394 * 181.89962 * 10 9 8 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47405 * 60.00219 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 C 1.48181 * 111.07114 * 70.57167 * 7 6 4 19 19 H 1.09001 * 109.46524 * 300.00416 * 1 2 3 20 20 H 1.09000 * 109.46814 * 59.99894 * 1 2 3 21 21 H 1.08989 * 109.47409 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47202 * 239.99406 * 2 1 3 23 23 H 1.09004 * 109.47176 * 119.99765 * 2 1 3 24 24 H 1.08999 * 109.46740 * 60.00462 * 6 4 3 25 25 H 1.08998 * 109.47166 * 300.00242 * 6 4 3 26 26 H 1.08999 * 113.75755 * 108.10617 * 8 7 6 27 27 H 1.08993 * 113.76352 * 336.73314 * 8 7 6 28 28 H 1.09004 * 113.73426 * 269.25544 * 9 8 7 29 29 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 30 30 H 1.09002 * 113.76007 * 23.23287 * 18 7 6 31 31 H 1.09000 * 113.82508 * 251.80992 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9209 2.9373 -0.0012 7 7 5.3879 2.8603 -0.0010 8 6 5.9886 4.1909 -0.2414 9 6 6.9738 3.4635 -1.1742 10 6 7.2492 4.2010 -2.4593 11 1 6.7897 5.1615 -2.6398 12 6 8.0834 3.6468 -3.4069 13 7 8.6383 2.4744 -3.1895 14 14 8.4254 4.5613 -4.9994 15 1 9.0518 5.8722 -4.6928 16 1 9.3457 3.7578 -5.8437 17 1 7.1502 4.7803 -5.7282 18 6 5.8959 2.3725 -1.3048 19 1 -0.3632 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0275 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.5853 3.4696 0.8888 25 1 3.5846 3.4692 -0.8911 26 1 6.4588 4.6262 0.6404 27 1 5.3259 4.8851 -0.7580 28 1 7.8821 3.1255 -0.6753 29 1 9.2249 2.0844 -3.8564 30 1 5.2059 2.5336 -2.1331 31 1 6.2920 1.3575 -1.2711 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207409699.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:25 Heat of formation + Delta-G solvation = -77.023985 kcal Electronic energy + Delta-G solvation = -14161.431876 eV Core-core repulsion = 11636.227183 eV Total energy + Delta-G solvation = -2525.204693 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.67746 -40.17766 -37.58482 -34.76606 -32.88011 -31.68997 -28.17281 -26.75658 -25.29295 -23.68337 -21.88299 -20.47813 -18.77556 -18.69500 -17.73037 -17.32498 -16.67745 -16.25762 -15.70658 -15.35815 -14.74376 -14.14688 -13.83914 -13.61271 -13.54767 -13.20974 -12.91381 -12.81403 -12.58996 -12.51248 -12.29227 -11.81845 -11.54105 -11.35032 -11.16734 -10.95590 -10.52465 -9.67626 -8.14049 -6.26897 1.17300 1.43934 1.45725 1.53504 1.58439 2.43264 3.15361 3.19038 3.71821 3.97716 4.08420 4.10666 4.27023 4.31854 4.34242 4.51175 4.64351 4.76544 4.86098 4.91664 4.96332 5.12335 5.24840 5.38316 5.43793 5.62133 5.83813 6.21402 6.27896 6.77499 6.83696 7.42355 8.95564 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047639 B = 0.006411 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.616547 B = 4366.149876 C = 4540.158796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.361 6.361 4 C 0.463 3.537 5 O -0.529 6.529 6 C 0.028 3.972 7 N -0.487 5.487 8 C 0.022 3.978 9 C 0.017 3.983 10 C -0.532 4.532 11 H 0.068 0.932 12 C 0.011 3.989 13 N -0.925 5.925 14 Si 0.961 3.039 15 H -0.265 1.265 16 H -0.289 1.289 17 H -0.268 1.268 18 C 0.033 3.967 19 H 0.073 0.927 20 H 0.068 0.932 21 H 0.100 0.900 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.144 0.856 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.023 0.977 29 H 0.262 0.738 30 H 0.048 0.952 31 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.207 0.203 5.016 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.278 6.278 4 C 0.306 3.694 5 O -0.417 6.417 6 C -0.101 4.101 7 N -0.212 5.212 8 C -0.106 4.106 9 C -0.002 4.002 10 C -0.570 4.570 11 H 0.086 0.914 12 C -0.188 4.188 13 N -0.564 5.564 14 Si 0.786 3.214 15 H -0.190 1.190 16 H -0.214 1.214 17 H -0.193 1.193 18 C -0.097 4.097 19 H 0.092 0.908 20 H 0.087 0.913 21 H 0.119 0.881 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.162 0.838 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.790 -0.614 5.555 15.810 hybrid contribution 0.333 0.098 -1.574 1.612 sum -14.456 -0.516 3.981 15.003 Atomic orbital electron populations 1.21808 0.89717 1.04453 1.03895 1.23295 0.97475 0.79342 1.02184 1.86485 1.23553 1.33704 1.84023 1.23994 0.80687 0.93034 0.71683 1.90668 1.61226 1.44113 1.45708 1.22390 0.91248 0.90031 1.06395 1.68473 1.04913 1.15524 1.32251 1.24035 0.96901 0.90410 0.99248 1.20334 0.92836 0.92712 0.94349 1.21434 1.28388 1.05221 1.01989 0.91427 1.25905 0.95233 0.95597 1.02094 1.70122 1.31868 1.18082 1.36313 0.85575 0.78222 0.78668 0.78983 1.19014 1.21439 1.19292 1.23738 0.98109 0.99322 0.88496 0.90788 0.91258 0.88111 0.92223 0.91472 0.83814 0.88893 0.89085 0.90155 0.95831 0.92954 0.93412 0.94376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 10.29 71.98 0.74 -1.36 16 2 C 0.05 1.18 6.19 71.98 0.45 1.63 16 3 O -0.36 -10.29 10.22 -51.41 -0.53 -10.82 16 4 C 0.46 16.08 7.77 71.24 0.55 16.63 16 5 O -0.53 -22.75 15.30 21.97 0.34 -22.42 16 6 C 0.03 0.89 5.42 85.56 0.46 1.36 16 7 N -0.49 -20.03 5.95 -911.96 -5.42 -25.46 16 8 C 0.02 0.85 7.53 86.41 0.65 1.51 16 9 C 0.02 0.87 3.60 -10.89 -0.04 0.83 16 10 C -0.53 -28.87 8.77 25.60 0.22 -28.64 16 11 H 0.07 3.45 7.81 -2.91 -0.02 3.43 16 12 C 0.01 0.61 5.46 84.66 0.46 1.07 16 13 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 14 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 15 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 16 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 C 0.03 1.61 6.33 86.37 0.55 2.15 16 19 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 20 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.49 8.13 -2.38 -0.02 1.47 16 23 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16 25 H 0.09 2.72 7.70 -2.39 -0.02 2.70 16 26 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 27 H 0.08 2.84 7.74 -2.39 -0.02 2.82 16 28 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.05 2.34 7.74 -2.39 -0.02 2.32 16 31 H 0.04 2.12 8.10 -2.39 -0.02 2.10 16 Total: -1.00 -67.64 269.49 1.84 -65.79 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.10 Total: 7.86 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 4.05 Total: -4.83 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -5.14 Total: -80.77 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.19 Total: -33.23 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -67.64 1.84 -65.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207409699.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.232 kcal (2) G-P(sol) polarization free energy of solvation -67.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds