Wall clock time and date at job start Sun Mar 29 2020 22:02:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.45193 * 109.47483 * 2 1
4 4 C 1.34230 * 117.00163 * 180.02562 * 3 2 1
5 5 O 1.20825 * 120.00132 * 0.02562 * 4 3 2
6 6 C 1.50705 * 120.00081 * 179.97438 * 4 3 2
7 7 N 1.46904 * 109.46950 * 179.97438 * 6 4 3
8 8 C 1.47959 * 110.99462 * 170.00406 * 7 6 4
9 9 C 1.53940 * 86.17699 * 222.41626 * 8 7 6
10 10 C 1.50706 * 113.72960 * 138.08084 * 9 8 7
11 11 H 1.07995 * 120.00167 * 1.62264 * 10 9 8
12 12 C 1.37879 * 119.99394 * 181.89962 * 10 9 8
13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9
14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9
15 15 H 1.48490 * 109.47405 * 60.00219 * 14 12 10
16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10
17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10
18 18 C 1.48181 * 111.07114 * 70.57167 * 7 6 4
19 19 H 1.09001 * 109.46524 * 300.00416 * 1 2 3
20 20 H 1.09000 * 109.46814 * 59.99894 * 1 2 3
21 21 H 1.08989 * 109.47409 * 180.02562 * 1 2 3
22 22 H 1.09006 * 109.47202 * 239.99406 * 2 1 3
23 23 H 1.09004 * 109.47176 * 119.99765 * 2 1 3
24 24 H 1.08999 * 109.46740 * 60.00462 * 6 4 3
25 25 H 1.08998 * 109.47166 * 300.00242 * 6 4 3
26 26 H 1.08999 * 113.75755 * 108.10617 * 8 7 6
27 27 H 1.08993 * 113.76352 * 336.73314 * 8 7 6
28 28 H 1.09004 * 113.73426 * 269.25544 * 9 8 7
29 29 H 0.96996 * 119.99730 * 179.97438 * 13 12 10
30 30 H 1.09002 * 113.76007 * 23.23287 * 18 7 6
31 31 H 1.09000 * 113.82508 * 251.80992 * 18 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3448 1.5447 -0.0005
5 8 4.0808 0.5865 -0.0015
6 6 3.9209 2.9373 -0.0012
7 7 5.3879 2.8603 -0.0010
8 6 5.9886 4.1909 -0.2414
9 6 6.9738 3.4635 -1.1742
10 6 7.2492 4.2010 -2.4593
11 1 6.7897 5.1615 -2.6398
12 6 8.0834 3.6468 -3.4069
13 7 8.6383 2.4744 -3.1895
14 14 8.4254 4.5613 -4.9994
15 1 9.0518 5.8722 -4.6928
16 1 9.3457 3.7578 -5.8437
17 1 7.1502 4.7803 -5.7282
18 6 5.8959 2.3725 -1.3048
19 1 -0.3632 0.5139 0.8900
20 1 -0.3633 0.5139 -0.8900
21 1 -0.3633 -1.0275 0.0005
22 1 1.8933 -0.5139 -0.8900
23 1 1.8933 -0.5138 0.8900
24 1 3.5853 3.4696 0.8888
25 1 3.5846 3.4692 -0.8911
26 1 6.4588 4.6262 0.6404
27 1 5.3259 4.8851 -0.7580
28 1 7.8821 3.1255 -0.6753
29 1 9.2249 2.0844 -3.8564
30 1 5.2059 2.5336 -2.1331
31 1 6.2920 1.3575 -1.2711
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001207409699.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:02:25
Heat of formation + Delta-G solvation = -77.023985 kcal
Electronic energy + Delta-G solvation = -14161.431876 eV
Core-core repulsion = 11636.227183 eV
Total energy + Delta-G solvation = -2525.204693 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-41.67746 -40.17766 -37.58482 -34.76606 -32.88011 -31.68997 -28.17281 -26.75658
-25.29295 -23.68337 -21.88299 -20.47813 -18.77556 -18.69500 -17.73037 -17.32498
-16.67745 -16.25762 -15.70658 -15.35815 -14.74376 -14.14688 -13.83914 -13.61271
-13.54767 -13.20974 -12.91381 -12.81403 -12.58996 -12.51248 -12.29227 -11.81845
-11.54105 -11.35032 -11.16734 -10.95590 -10.52465 -9.67626 -8.14049 -6.26897
1.17300 1.43934 1.45725 1.53504 1.58439 2.43264 3.15361 3.19038
3.71821 3.97716 4.08420 4.10666 4.27023 4.31854 4.34242 4.51175
4.64351 4.76544 4.86098 4.91664 4.96332 5.12335 5.24840 5.38316
5.43793 5.62133 5.83813 6.21402 6.27896 6.77499 6.83696 7.42355
8.95564
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.047639 B = 0.006411 C = 0.006166
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 587.616547 B = 4366.149876 C = 4540.158796
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.051 3.949
3 O -0.361 6.361
4 C 0.463 3.537
5 O -0.529 6.529
6 C 0.028 3.972
7 N -0.487 5.487
8 C 0.022 3.978
9 C 0.017 3.983
10 C -0.532 4.532
11 H 0.068 0.932
12 C 0.011 3.989
13 N -0.925 5.925
14 Si 0.961 3.039
15 H -0.265 1.265
16 H -0.289 1.289
17 H -0.268 1.268
18 C 0.033 3.967
19 H 0.073 0.927
20 H 0.068 0.932
21 H 0.100 0.900
22 H 0.059 0.941
23 H 0.067 0.933
24 H 0.144 0.856
25 H 0.093 0.907
26 H 0.091 0.909
27 H 0.080 0.920
28 H 0.023 0.977
29 H 0.262 0.738
30 H 0.048 0.952
31 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.207 0.203 5.016 16.015
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.023 4.023
3 O -0.278 6.278
4 C 0.306 3.694
5 O -0.417 6.417
6 C -0.101 4.101
7 N -0.212 5.212
8 C -0.106 4.106
9 C -0.002 4.002
10 C -0.570 4.570
11 H 0.086 0.914
12 C -0.188 4.188
13 N -0.564 5.564
14 Si 0.786 3.214
15 H -0.190 1.190
16 H -0.214 1.214
17 H -0.193 1.193
18 C -0.097 4.097
19 H 0.092 0.908
20 H 0.087 0.913
21 H 0.119 0.881
22 H 0.078 0.922
23 H 0.085 0.915
24 H 0.162 0.838
25 H 0.111 0.889
26 H 0.109 0.891
27 H 0.098 0.902
28 H 0.042 0.958
29 H 0.070 0.930
30 H 0.066 0.934
31 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -14.790 -0.614 5.555 15.810
hybrid contribution 0.333 0.098 -1.574 1.612
sum -14.456 -0.516 3.981 15.003
Atomic orbital electron populations
1.21808 0.89717 1.04453 1.03895 1.23295 0.97475 0.79342 1.02184
1.86485 1.23553 1.33704 1.84023 1.23994 0.80687 0.93034 0.71683
1.90668 1.61226 1.44113 1.45708 1.22390 0.91248 0.90031 1.06395
1.68473 1.04913 1.15524 1.32251 1.24035 0.96901 0.90410 0.99248
1.20334 0.92836 0.92712 0.94349 1.21434 1.28388 1.05221 1.01989
0.91427 1.25905 0.95233 0.95597 1.02094 1.70122 1.31868 1.18082
1.36313 0.85575 0.78222 0.78668 0.78983 1.19014 1.21439 1.19292
1.23738 0.98109 0.99322 0.88496 0.90788 0.91258 0.88111 0.92223
0.91472 0.83814 0.88893 0.89085 0.90155 0.95831 0.92954 0.93412
0.94376
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.10 10.29 71.98 0.74 -1.36 16
2 C 0.05 1.18 6.19 71.98 0.45 1.63 16
3 O -0.36 -10.29 10.22 -51.41 -0.53 -10.82 16
4 C 0.46 16.08 7.77 71.24 0.55 16.63 16
5 O -0.53 -22.75 15.30 21.97 0.34 -22.42 16
6 C 0.03 0.89 5.42 85.56 0.46 1.36 16
7 N -0.49 -20.03 5.95 -911.96 -5.42 -25.46 16
8 C 0.02 0.85 7.53 86.41 0.65 1.51 16
9 C 0.02 0.87 3.60 -10.89 -0.04 0.83 16
10 C -0.53 -28.87 8.77 25.60 0.22 -28.64 16
11 H 0.07 3.45 7.81 -2.91 -0.02 3.43 16
12 C 0.01 0.61 5.46 84.66 0.46 1.07 16
13 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16
14 Si 0.96 43.15 29.54 68.60 2.03 45.18 16
15 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16
16 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16
17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
18 C 0.03 1.61 6.33 86.37 0.55 2.15 16
19 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
20 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
21 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16
22 H 0.06 1.49 8.13 -2.38 -0.02 1.47 16
23 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
24 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16
25 H 0.09 2.72 7.70 -2.39 -0.02 2.70 16
26 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16
27 H 0.08 2.84 7.74 -2.39 -0.02 2.82 16
28 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16
29 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16
30 H 0.05 2.34 7.74 -2.39 -0.02 2.32 16
31 H 0.04 2.12 8.10 -2.39 -0.02 2.10 16
Total: -1.00 -67.64 269.49 1.84 -65.79
By element:
Atomic # 1 Polarization: 6.77 SS G_CDS: 1.10 Total: 7.86 kcal
Atomic # 6 Polarization: -8.88 SS G_CDS: 4.05 Total: -4.83 kcal
Atomic # 7 Polarization: -75.63 SS G_CDS: -5.14 Total: -80.77 kcal
Atomic # 8 Polarization: -33.04 SS G_CDS: -0.19 Total: -33.23 kcal
Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal
Total: -67.64 1.84 -65.79 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207409699.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.232 kcal
(2) G-P(sol) polarization free energy of solvation -67.637 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.869 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.792 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.024 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds