Wall clock time and date at job start Sun Mar 29 2020 22:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47452 * 2 1 4 4 C 1.52997 * 109.47452 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46881 * 54.99826 * 4 3 2 6 6 O 1.42904 * 109.47100 * 295.00743 * 4 3 2 7 7 C 1.52997 * 109.47504 * 175.00186 * 4 3 2 8 8 N 1.46899 * 109.47254 * 184.99955 * 7 4 3 9 9 C 1.47477 * 111.00047 * 265.97286 * 8 7 4 10 10 C 1.53513 * 87.92932 * 221.29743 * 9 8 7 11 11 C 1.50700 * 114.34648 * 139.68711 * 10 9 8 12 12 H 1.08005 * 119.99583 * 266.07840 * 11 10 9 13 13 C 1.37877 * 120.00435 * 86.06645 * 11 10 9 14 14 N 1.31519 * 119.99772 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00372 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46663 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46838 * 120.00391 * 15 13 11 18 18 H 1.48498 * 109.47203 * 240.00554 * 15 13 11 19 19 C 1.47481 * 111.00017 * 169.99694 * 8 7 4 20 20 H 1.09003 * 109.47101 * 300.00186 * 1 2 3 21 21 H 1.09007 * 109.47368 * 59.99441 * 1 2 3 22 22 H 1.08998 * 109.47817 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46810 * 240.00278 * 2 1 3 24 24 H 1.08999 * 109.46781 * 120.00661 * 2 1 3 25 25 H 1.09003 * 109.46886 * 60.00325 * 3 2 1 26 26 H 1.08998 * 109.47228 * 300.00420 * 3 2 1 27 27 H 0.96708 * 113.99258 * 299.99573 * 6 4 3 28 28 H 1.09002 * 109.47153 * 64.99951 * 7 4 3 29 29 H 1.09001 * 109.46832 * 305.00142 * 7 4 3 30 30 H 1.09000 * 113.47846 * 336.05901 * 9 8 7 31 31 H 1.08998 * 113.47506 * 106.53321 * 9 8 7 32 32 H 1.09005 * 114.16820 * 272.37471 * 10 9 8 33 33 H 0.96998 * 120.00145 * 179.97438 * 14 13 11 34 34 H 1.09000 * 113.47744 * 253.47034 * 19 8 7 35 35 H 1.08996 * 113.47276 * 23.88258 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8528 -0.8409 6 8 4.0458 0.8730 1.2219 7 6 4.0801 2.8794 -0.1250 8 7 5.5442 2.8705 -0.2448 9 6 6.1834 3.0435 1.0730 10 6 7.1935 3.9818 0.3978 11 6 7.5499 5.1996 1.2108 12 1 7.0152 6.1256 1.0591 13 6 8.5584 5.1316 2.1485 14 7 9.2097 4.0040 2.3331 15 14 8.9997 6.6409 3.1568 16 1 8.1246 7.7736 2.7612 17 1 8.8059 6.3465 4.5993 18 1 10.4191 7.0023 2.9117 19 6 6.0531 4.2071 -0.6049 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3635 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8932 -0.5139 0.8899 25 1 1.6768 1.9562 0.8900 26 1 1.6767 1.9563 -0.8899 27 1 3.7601 1.3476 2.0146 28 1 3.7914 3.4461 0.7602 29 1 3.6459 3.3429 -1.0109 30 1 5.5463 3.5438 1.8023 31 1 6.6322 2.1293 1.4612 32 1 8.0626 3.4747 -0.0213 33 1 9.9195 3.9562 2.9925 34 1 6.3916 4.2789 -1.6385 35 1 5.3808 5.0177 -0.3242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252771557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:31 Heat of formation + Delta-G solvation = -37.816123 kcal Electronic energy + Delta-G solvation = -14415.655102 eV Core-core repulsion = 12027.983684 eV Total energy + Delta-G solvation = -2387.671418 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.16098 -37.23984 -34.04467 -32.68317 -30.72729 -28.09725 -25.62083 -24.67744 -23.13505 -21.13460 -20.98769 -18.54270 -16.73090 -16.02808 -15.82757 -14.84262 -14.69193 -14.44993 -13.86813 -13.67606 -13.35034 -12.88310 -12.06006 -11.91600 -11.72698 -11.60592 -11.32656 -11.17924 -11.00125 -10.69683 -10.61530 -10.54248 -10.24554 -10.05520 -9.36266 -9.10121 -8.88742 -8.41398 -7.91988 -6.03160 -4.07864 3.28377 3.36626 3.39970 4.39560 4.48841 4.76390 4.98193 5.02074 5.18484 5.26008 5.37775 5.46859 5.53201 5.67068 5.77543 5.81725 5.92774 5.98909 6.05059 6.16758 6.28613 6.38959 6.43015 6.54517 6.70947 6.79538 7.24342 7.27705 7.75233 7.94299 7.96579 8.13866 8.40373 8.95471 9.56913 11.06406 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060684 B = 0.005683 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.292423 B = 4925.413500 C = 4997.017334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.151 4.151 4 C 0.116 3.884 5 H 0.100 0.900 6 O -0.552 6.552 7 C -0.011 4.011 8 N -0.479 5.479 9 C 0.016 3.984 10 C 0.038 3.962 11 C -0.516 4.516 12 H 0.057 0.943 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.008 4.008 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.367 0.633 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.261 0.739 34 H 0.060 0.940 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.717 -4.280 -3.167 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.190 4.190 4 C 0.057 3.943 5 H 0.117 0.883 6 O -0.357 6.357 7 C -0.141 4.141 8 N -0.201 5.201 9 C -0.113 4.113 10 C 0.019 3.981 11 C -0.555 4.555 12 H 0.075 0.925 13 C -0.136 4.136 14 N -0.522 5.522 15 Si 0.718 3.282 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.137 4.137 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.213 0.787 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.185 -5.388 -3.903 14.768 hybrid contribution -0.436 1.952 1.452 2.472 sum -13.621 -3.435 -2.451 14.260 Atomic orbital electron populations 1.21793 0.96309 1.01331 1.01521 1.21447 0.95092 0.96650 1.02592 1.22335 0.96857 0.97404 1.02374 1.21899 0.90716 0.93737 0.87970 0.88253 1.86615 1.77250 1.56509 1.15291 1.23344 0.93395 0.96762 1.00601 1.68822 1.03971 1.27335 1.19931 1.23987 0.97421 1.00091 0.89828 1.20132 0.91942 0.94568 0.91491 1.21074 1.18087 0.96394 1.19922 0.92496 1.25021 0.95694 0.95838 0.97058 1.69987 1.22920 1.25177 1.34144 0.86574 0.78358 0.83248 0.80043 1.19778 1.20997 1.20890 1.24027 0.99370 0.89876 1.00433 0.92949 0.93000 0.92951 0.92120 0.91357 0.91963 0.91373 0.78681 0.94191 0.91476 0.93381 0.91540 0.91870 0.92923 0.92157 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.27 5.83 -26.74 -0.16 -1.43 16 3 C -0.15 -1.71 4.89 -26.74 -0.13 -1.84 16 4 C 0.12 1.69 3.21 -26.73 -0.09 1.61 16 5 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 6 O -0.55 -8.85 12.21 -35.23 -0.43 -9.28 16 7 C -0.01 -0.19 4.53 -3.83 -0.02 -0.21 16 8 N -0.48 -9.92 6.31 -244.63 -1.54 -11.47 16 9 C 0.02 0.36 6.66 -7.54 -0.05 0.31 16 10 C 0.04 0.97 3.76 -91.24 -0.34 0.63 16 11 C -0.52 -14.25 8.83 -34.44 -0.30 -14.55 16 12 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 13 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 14 N -0.88 -25.87 13.26 55.43 0.74 -25.14 16 15 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.01 -0.18 7.25 -7.54 -0.05 -0.23 16 20 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.78 7.82 -51.93 -0.41 0.37 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.37 4.88 9.05 45.56 0.41 5.29 16 28 H 0.04 0.67 7.30 -51.93 -0.38 0.29 16 29 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 30 H 0.05 1.12 7.38 -51.93 -0.38 0.73 16 31 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 32 H 0.06 1.79 8.11 -51.93 -0.42 1.36 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.07 7.87 -51.93 -0.41 0.66 16 LS Contribution 287.98 15.07 4.34 4.34 Total: -1.00 -29.43 287.98 -8.15 -37.57 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.36 Total: 2.77 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -0.87 Total: -14.94 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.81 Total: -36.60 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.43 Total: -9.28 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.43 -8.15 -37.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252771557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.243 kcal (2) G-P(sol) polarization free energy of solvation -29.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds