Wall clock time and date at job start Sun Mar 29 2020 22:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47452 * 2 1 4 4 C 1.52997 * 109.47452 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46881 * 54.99826 * 4 3 2 6 6 O 1.42904 * 109.47100 * 295.00743 * 4 3 2 7 7 C 1.52997 * 109.47504 * 175.00186 * 4 3 2 8 8 N 1.46899 * 109.47254 * 184.99955 * 7 4 3 9 9 C 1.47477 * 111.00047 * 265.97286 * 8 7 4 10 10 C 1.53513 * 87.92932 * 221.29743 * 9 8 7 11 11 C 1.50700 * 114.34648 * 139.68711 * 10 9 8 12 12 H 1.08005 * 119.99583 * 266.07840 * 11 10 9 13 13 C 1.37877 * 120.00435 * 86.06645 * 11 10 9 14 14 N 1.31519 * 119.99772 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00372 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46663 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46838 * 120.00391 * 15 13 11 18 18 H 1.48498 * 109.47203 * 240.00554 * 15 13 11 19 19 C 1.47481 * 111.00017 * 169.99694 * 8 7 4 20 20 H 1.09003 * 109.47101 * 300.00186 * 1 2 3 21 21 H 1.09007 * 109.47368 * 59.99441 * 1 2 3 22 22 H 1.08998 * 109.47817 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46810 * 240.00278 * 2 1 3 24 24 H 1.08999 * 109.46781 * 120.00661 * 2 1 3 25 25 H 1.09003 * 109.46886 * 60.00325 * 3 2 1 26 26 H 1.08998 * 109.47228 * 300.00420 * 3 2 1 27 27 H 0.96708 * 113.99258 * 299.99573 * 6 4 3 28 28 H 1.09002 * 109.47153 * 64.99951 * 7 4 3 29 29 H 1.09001 * 109.46832 * 305.00142 * 7 4 3 30 30 H 1.09000 * 113.47846 * 336.05901 * 9 8 7 31 31 H 1.08998 * 113.47506 * 106.53321 * 9 8 7 32 32 H 1.09005 * 114.16820 * 272.37471 * 10 9 8 33 33 H 0.96998 * 120.00145 * 179.97438 * 14 13 11 34 34 H 1.09000 * 113.47744 * 253.47034 * 19 8 7 35 35 H 1.08996 * 113.47276 * 23.88258 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8528 -0.8409 6 8 4.0458 0.8730 1.2219 7 6 4.0801 2.8794 -0.1250 8 7 5.5442 2.8705 -0.2448 9 6 6.1834 3.0435 1.0730 10 6 7.1935 3.9818 0.3978 11 6 7.5499 5.1996 1.2108 12 1 7.0152 6.1256 1.0591 13 6 8.5584 5.1316 2.1485 14 7 9.2097 4.0040 2.3331 15 14 8.9997 6.6409 3.1568 16 1 8.1246 7.7736 2.7612 17 1 8.8059 6.3465 4.5993 18 1 10.4191 7.0023 2.9117 19 6 6.0531 4.2071 -0.6049 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3635 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8932 -0.5139 0.8899 25 1 1.6768 1.9562 0.8900 26 1 1.6767 1.9563 -0.8899 27 1 3.7601 1.3476 2.0146 28 1 3.7914 3.4461 0.7602 29 1 3.6459 3.3429 -1.0109 30 1 5.5463 3.5438 1.8023 31 1 6.6322 2.1293 1.4612 32 1 8.0626 3.4747 -0.0213 33 1 9.9195 3.9562 2.9925 34 1 6.3916 4.2789 -1.6385 35 1 5.3808 5.0177 -0.3242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252771557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:31 Heat of formation + Delta-G solvation = -59.727264 kcal Electronic energy + Delta-G solvation = -14416.605240 eV Core-core repulsion = 12027.983684 eV Total energy + Delta-G solvation = -2388.621556 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.81708 -38.51994 -34.98934 -34.72840 -32.17080 -29.52632 -27.24586 -26.50658 -24.64283 -22.34340 -22.06516 -20.43246 -18.67961 -17.31120 -17.10078 -16.54711 -16.30919 -15.73987 -15.56100 -14.96058 -14.35857 -14.22635 -13.82972 -13.40704 -13.18210 -12.90037 -12.75664 -12.63191 -12.37886 -12.26107 -12.00380 -11.84894 -11.59236 -11.50807 -11.15924 -10.87175 -10.64944 -10.44717 -9.63503 -8.15061 -6.27277 1.41798 1.43221 1.55204 2.42286 3.13982 3.19661 3.58097 3.90618 4.06285 4.11000 4.21028 4.28502 4.37819 4.54125 4.56527 4.68350 4.71962 4.76769 4.89679 4.92580 4.97685 5.04889 5.12177 5.26759 5.29871 5.40026 5.48763 5.54049 5.61892 5.84652 6.29186 6.42687 6.82688 6.87554 7.41540 8.95058 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060684 B = 0.005683 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.292423 B = 4925.413500 C = 4997.017334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.140 4.140 4 C 0.119 3.881 5 H 0.087 0.913 6 O -0.573 6.573 7 C -0.012 4.012 8 N -0.482 5.482 9 C 0.033 3.967 10 C 0.014 3.986 11 C -0.531 4.531 12 H 0.060 0.940 13 C 0.014 3.986 14 N -0.923 5.923 15 Si 0.960 3.040 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.007 3.993 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.377 0.623 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.543 -3.306 -3.264 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.178 4.178 4 C 0.060 3.940 5 H 0.105 0.895 6 O -0.380 6.380 7 C -0.141 4.141 8 N -0.204 5.204 9 C -0.097 4.097 10 C -0.005 4.005 11 C -0.569 4.569 12 H 0.078 0.922 13 C -0.186 4.186 14 N -0.562 5.562 15 Si 0.785 3.215 16 H -0.187 1.187 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.121 4.121 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.225 0.775 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.031 -4.408 -4.010 16.169 hybrid contribution 0.125 1.605 1.436 2.157 sum -14.907 -2.803 -2.573 15.385 Atomic orbital electron populations 1.21760 0.94747 1.02011 1.02089 1.21427 0.96417 0.95980 1.01908 1.22225 0.93946 0.98169 1.03482 1.21891 0.92953 0.92003 0.87129 0.89471 1.86585 1.77924 1.57190 1.16256 1.23461 0.90417 0.98484 1.01769 1.68743 1.07077 1.26814 1.17812 1.23657 0.97021 0.98076 0.90897 1.20105 0.92211 0.94668 0.93495 1.21402 1.18318 0.97019 1.20133 0.92163 1.25868 0.95641 0.98799 0.98264 1.70121 1.23615 1.27432 1.35038 0.85475 0.78105 0.79617 0.78273 1.18670 1.20554 1.20583 1.23849 0.97654 0.90685 0.99950 0.92555 0.92228 0.92309 0.92424 0.92537 0.91055 0.89969 0.77481 0.93786 0.89349 0.93198 0.94183 0.95633 0.92851 0.90998 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.12 -2.30 5.83 30.59 0.18 -2.13 16 3 C -0.14 -2.81 4.89 30.59 0.15 -2.66 16 4 C 0.12 3.30 3.21 30.59 0.10 3.40 16 5 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 6 O -0.57 -18.00 12.21 -148.98 -1.82 -19.82 16 7 C -0.01 -0.38 4.53 86.30 0.39 0.01 16 8 N -0.48 -19.64 6.31 -927.86 -5.85 -25.50 16 9 C 0.03 1.55 6.66 83.58 0.56 2.11 16 10 C 0.01 0.75 3.76 -11.20 -0.04 0.71 16 11 C -0.53 -29.38 8.83 25.60 0.23 -29.15 16 12 H 0.06 3.22 7.81 -2.91 -0.02 3.19 16 13 C 0.01 0.75 5.46 84.65 0.46 1.22 16 14 N -0.92 -55.11 13.26 21.45 0.28 -54.83 16 15 Si 0.96 43.35 29.54 68.60 2.03 45.37 16 16 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 C 0.01 0.31 7.25 83.58 0.61 0.92 16 20 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 21 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 22 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 1.22 7.82 -2.39 -0.02 1.20 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.38 9.74 9.05 -74.05 -0.67 9.07 16 28 H 0.04 1.36 7.30 -2.39 -0.02 1.34 16 29 H 0.09 2.41 8.08 -2.39 -0.02 2.39 16 30 H 0.05 2.31 7.38 -2.39 -0.02 2.30 16 31 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.03 1.51 8.11 -2.38 -0.02 1.49 16 33 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.06 2.49 7.87 -2.39 -0.02 2.47 16 Total: -1.00 -63.03 287.98 -1.65 -64.68 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.37 Total: 17.23 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 3.34 Total: -27.14 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -5.57 Total: -80.33 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -1.82 Total: -19.82 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -63.03 -1.65 -64.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252771557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.956 kcal (2) G-P(sol) polarization free energy of solvation -63.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds