Wall clock time and date at job start Sun Mar 29 2020 22:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47395 * 305.00575 * 4 3 2 6 6 O 1.42906 * 109.46737 * 65.00101 * 4 3 2 7 7 C 1.53002 * 109.47413 * 185.00110 * 4 3 2 8 8 N 1.46896 * 109.47369 * 180.02562 * 7 4 3 9 9 C 1.47479 * 110.99906 * 265.97134 * 8 7 4 10 10 C 1.53516 * 87.93086 * 221.29454 * 9 8 7 11 11 C 1.50706 * 114.33883 * 139.68213 * 10 9 8 12 12 H 1.07990 * 120.00067 * 266.07439 * 11 10 9 13 13 C 1.37881 * 119.99610 * 86.07902 * 11 10 9 14 14 N 1.31509 * 120.00398 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99624 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47128 * 90.00126 * 15 13 11 17 17 H 1.48497 * 109.46996 * 210.00011 * 15 13 11 18 18 H 1.48501 * 109.47197 * 330.00089 * 15 13 11 19 19 C 1.47477 * 110.99904 * 169.99803 * 8 7 4 20 20 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 24 24 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 25 25 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 26 26 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 27 27 H 0.96698 * 113.99991 * 60.00208 * 6 4 3 28 28 H 1.09001 * 109.46843 * 300.00257 * 7 4 3 29 29 H 1.08998 * 109.46646 * 59.99971 * 7 4 3 30 30 H 1.08996 * 113.47894 * 336.06551 * 9 8 7 31 31 H 1.09003 * 113.47548 * 106.53211 * 9 8 7 32 32 H 1.08997 * 114.17246 * 272.37509 * 10 9 8 33 33 H 0.97002 * 120.00268 * 180.02562 * 14 13 11 34 34 H 1.09000 * 113.47696 * 253.46560 * 19 8 7 35 35 H 1.08995 * 113.47736 * 23.88105 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 8 4.0468 0.8729 -1.2202 7 6 4.0800 2.8795 0.1264 8 7 5.5490 2.8795 0.1264 9 6 6.0775 2.8562 1.5030 10 6 7.1337 3.8764 1.0555 11 6 7.4151 4.9615 2.0627 12 1 6.8891 5.9028 2.0035 13 6 8.3443 4.7525 3.0597 14 7 8.9846 3.6061 3.1321 15 14 8.6936 6.0978 4.3078 16 1 7.7805 5.9450 5.4690 17 1 10.1015 5.9926 4.7680 18 1 8.4763 7.4253 3.6786 19 6 6.0775 4.2511 0.0064 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9562 0.8900 27 1 3.7618 1.3472 -2.0132 28 1 3.7170 3.4688 -0.7156 29 1 3.7163 3.3139 1.0576 30 1 5.3800 3.2492 2.2427 31 1 6.4987 1.8927 1.7902 32 1 8.0371 3.4303 0.6397 33 1 9.6380 3.4589 3.8338 34 1 6.4987 4.4699 -0.9749 35 1 5.3796 5.0166 0.3457 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252771565.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:34 Heat of formation + Delta-G solvation = -37.530170 kcal Electronic energy + Delta-G solvation = -14347.778088 eV Core-core repulsion = 11960.119070 eV Total energy + Delta-G solvation = -2387.659018 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.13839 -37.29198 -34.04039 -32.69909 -30.70420 -28.10708 -25.62834 -24.75189 -23.15091 -21.12990 -20.95513 -18.57672 -16.74847 -16.11842 -15.74411 -14.89878 -14.61647 -14.45254 -13.83803 -13.76413 -13.37254 -12.89795 -12.04472 -11.90748 -11.80820 -11.58791 -11.33138 -11.20265 -10.99466 -10.70026 -10.64563 -10.53564 -10.22535 -10.04949 -9.39327 -9.13935 -8.90375 -8.42882 -7.90846 -6.04364 -4.09246 3.28610 3.35797 3.38705 4.38361 4.47804 4.77698 4.97974 5.01388 5.20709 5.23863 5.30022 5.47088 5.52230 5.68887 5.76594 5.81866 5.95940 5.99373 6.04716 6.18012 6.28585 6.31023 6.41355 6.50701 6.69748 6.77848 7.17461 7.21838 7.73946 7.92144 7.96986 8.13463 8.38794 8.94056 9.55679 11.05201 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.053976 B = 0.005652 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.625475 B = 4953.223178 C = 5100.698756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.151 4.151 4 C 0.117 3.883 5 H 0.094 0.906 6 O -0.548 6.548 7 C -0.012 4.012 8 N -0.473 5.473 9 C 0.003 3.997 10 C 0.041 3.959 11 C -0.517 4.517 12 H 0.057 0.943 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.007 4.007 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.365 0.635 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.262 0.738 34 H 0.060 0.940 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.361 -3.592 -5.361 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.190 4.190 4 C 0.058 3.942 5 H 0.112 0.888 6 O -0.351 6.351 7 C -0.142 4.142 8 N -0.195 5.195 9 C -0.126 4.126 10 C 0.022 3.978 11 C -0.556 4.556 12 H 0.075 0.925 13 C -0.136 4.136 14 N -0.523 5.523 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.136 4.136 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.211 0.789 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.792 -4.650 -5.332 14.618 hybrid contribution -0.546 1.761 1.066 2.130 sum -13.338 -2.889 -4.266 14.299 Atomic orbital electron populations 1.21792 0.96282 1.01346 1.01526 1.21452 0.95121 0.96636 1.02601 1.22334 0.96792 0.97440 1.02405 1.21823 0.90728 0.93700 0.87999 0.88764 1.86604 1.77324 1.56099 1.15090 1.23353 0.93186 0.96902 1.00720 1.68887 1.05502 1.22605 1.22461 1.24115 0.98890 1.01305 0.88279 1.20089 0.92402 0.93410 0.91873 1.21041 1.22564 1.00174 1.11779 0.92492 1.25021 0.95374 0.95463 0.97737 1.69971 1.25924 1.23252 1.33140 0.86620 0.77564 0.82365 0.81606 1.20675 1.21107 1.19832 1.24006 0.99124 0.89856 1.00603 0.92945 0.92983 0.92940 0.92088 0.91381 0.91922 0.91341 0.78923 0.91990 0.93615 0.93069 0.91847 0.91778 0.92850 0.92107 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.29 5.83 -26.73 -0.16 -1.45 16 3 C -0.15 -1.73 4.89 -26.73 -0.13 -1.86 16 4 C 0.12 1.72 3.24 -26.73 -0.09 1.64 16 5 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 6 O -0.55 -8.39 12.74 -35.23 -0.45 -8.84 16 7 C -0.01 -0.20 4.48 -3.83 -0.02 -0.22 16 8 N -0.47 -9.81 6.20 -244.63 -1.52 -11.33 16 9 C 0.00 0.07 7.28 -7.54 -0.05 0.02 16 10 C 0.04 1.06 3.76 -91.23 -0.34 0.72 16 11 C -0.52 -14.26 8.83 -34.44 -0.30 -14.56 16 12 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 14 N -0.89 -25.84 13.26 55.43 0.74 -25.11 16 15 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.01 -0.15 7.24 -7.54 -0.05 -0.21 16 20 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.76 7.82 -51.93 -0.41 0.36 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.37 4.30 9.05 45.56 0.41 4.71 16 28 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 29 H 0.05 0.77 7.30 -51.93 -0.38 0.39 16 30 H 0.05 1.20 7.38 -51.93 -0.38 0.81 16 31 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.06 1.81 8.11 -51.93 -0.42 1.39 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.07 7.87 -51.93 -0.41 0.66 16 LS Contribution 289.00 15.07 4.36 4.36 Total: -1.00 -29.49 289.00 -8.13 -37.62 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.36 Total: 2.34 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -0.88 Total: -15.15 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.78 Total: -36.43 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.45 Total: -8.84 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.49 -8.13 -37.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252771565.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.089 kcal (2) G-P(sol) polarization free energy of solvation -29.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds