Wall clock time and date at job start Sun Mar 29 2020 22:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47395 * 305.00575 * 4 3 2 6 6 O 1.42906 * 109.46737 * 65.00101 * 4 3 2 7 7 C 1.53002 * 109.47413 * 185.00110 * 4 3 2 8 8 N 1.46896 * 109.47369 * 180.02562 * 7 4 3 9 9 C 1.47479 * 110.99906 * 265.97134 * 8 7 4 10 10 C 1.53516 * 87.93086 * 221.29454 * 9 8 7 11 11 C 1.50706 * 114.33883 * 139.68213 * 10 9 8 12 12 H 1.07990 * 120.00067 * 266.07439 * 11 10 9 13 13 C 1.37881 * 119.99610 * 86.07902 * 11 10 9 14 14 N 1.31509 * 120.00398 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99624 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47128 * 90.00126 * 15 13 11 17 17 H 1.48497 * 109.46996 * 210.00011 * 15 13 11 18 18 H 1.48501 * 109.47197 * 330.00089 * 15 13 11 19 19 C 1.47477 * 110.99904 * 169.99803 * 8 7 4 20 20 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 24 24 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 25 25 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 26 26 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 27 27 H 0.96698 * 113.99991 * 60.00208 * 6 4 3 28 28 H 1.09001 * 109.46843 * 300.00257 * 7 4 3 29 29 H 1.08998 * 109.46646 * 59.99971 * 7 4 3 30 30 H 1.08996 * 113.47894 * 336.06551 * 9 8 7 31 31 H 1.09003 * 113.47548 * 106.53211 * 9 8 7 32 32 H 1.08997 * 114.17246 * 272.37509 * 10 9 8 33 33 H 0.97002 * 120.00268 * 180.02562 * 14 13 11 34 34 H 1.09000 * 113.47696 * 253.46560 * 19 8 7 35 35 H 1.08995 * 113.47736 * 23.88105 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 8 4.0468 0.8729 -1.2202 7 6 4.0800 2.8795 0.1264 8 7 5.5490 2.8795 0.1264 9 6 6.0775 2.8562 1.5030 10 6 7.1337 3.8764 1.0555 11 6 7.4151 4.9615 2.0627 12 1 6.8891 5.9028 2.0035 13 6 8.3443 4.7525 3.0597 14 7 8.9846 3.6061 3.1321 15 14 8.6936 6.0978 4.3078 16 1 7.7805 5.9450 5.4690 17 1 10.1015 5.9926 4.7680 18 1 8.4763 7.4253 3.6786 19 6 6.0775 4.2511 0.0064 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9562 0.8900 27 1 3.7618 1.3472 -2.0132 28 1 3.7170 3.4688 -0.7156 29 1 3.7163 3.3139 1.0576 30 1 5.3800 3.2492 2.2427 31 1 6.4987 1.8927 1.7902 32 1 8.0371 3.4303 0.6397 33 1 9.6380 3.4589 3.8338 34 1 6.4987 4.4699 -0.9749 35 1 5.3796 5.0166 0.3457 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252771565.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:33 Heat of formation + Delta-G solvation = -59.484797 kcal Electronic energy + Delta-G solvation = -14348.730112 eV Core-core repulsion = 11960.119070 eV Total energy + Delta-G solvation = -2388.611042 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.80466 -38.54513 -34.97360 -34.74216 -32.14778 -29.53093 -27.26283 -26.57421 -24.65784 -22.31775 -22.06273 -20.46813 -18.70530 -17.34799 -16.97952 -16.62728 -16.37093 -15.66618 -15.35653 -15.24535 -14.36745 -14.19753 -13.83875 -13.43548 -13.20077 -12.88819 -12.74794 -12.66568 -12.37897 -12.24385 -12.02489 -11.84902 -11.58540 -11.51323 -11.17385 -10.92504 -10.61412 -10.47860 -9.62182 -8.16024 -6.28436 1.42202 1.43102 1.54022 2.41737 3.12989 3.16182 3.68867 3.75473 4.09365 4.10142 4.17857 4.27256 4.38336 4.53686 4.55985 4.63735 4.69721 4.75805 4.88288 4.91667 4.95603 5.03380 5.08526 5.21416 5.25995 5.36742 5.47841 5.54192 5.60786 5.83268 6.27895 6.40133 6.81495 6.99024 7.40539 8.93948 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.053976 B = 0.005652 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.625475 B = 4953.223178 C = 5100.698756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.140 4.140 4 C 0.122 3.878 5 H 0.070 0.930 6 O -0.565 6.565 7 C -0.013 4.013 8 N -0.475 5.475 9 C 0.015 3.985 10 C 0.019 3.981 11 C -0.532 4.532 12 H 0.061 0.939 13 C 0.013 3.987 14 N -0.924 5.924 15 Si 0.961 3.039 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.264 1.264 19 C 0.009 3.991 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.381 0.619 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.187 -2.555 -5.683 16.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.178 4.178 4 C 0.063 3.937 5 H 0.088 0.912 6 O -0.372 6.372 7 C -0.142 4.142 8 N -0.197 5.197 9 C -0.114 4.114 10 C 0.000 4.000 11 C -0.570 4.570 12 H 0.079 0.921 13 C -0.186 4.186 14 N -0.562 5.562 15 Si 0.785 3.215 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.188 1.188 19 C -0.120 4.120 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.230 0.770 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.639 -3.604 -5.677 16.109 hybrid contribution 0.018 1.397 1.096 1.776 sum -14.621 -2.207 -4.580 15.479 Atomic orbital electron populations 1.21758 0.94653 1.02038 1.02129 1.21436 0.96504 0.95996 1.01858 1.22228 0.93863 0.98186 1.03568 1.21717 0.92935 0.91817 0.87245 0.91235 1.86569 1.77903 1.56750 1.15945 1.23467 0.90182 0.98739 1.01806 1.68814 1.08740 1.22081 1.20092 1.23844 0.98402 0.99284 0.89900 1.20052 0.92370 0.94078 0.93526 1.21383 1.22718 1.00684 1.12225 0.92075 1.25877 0.95204 0.97712 0.99794 1.70108 1.26687 1.25357 1.34083 0.85520 0.77335 0.79598 0.78997 1.19938 1.20949 1.18786 1.23826 0.97742 0.90571 0.99815 0.92596 0.92091 0.92299 0.93102 0.91975 0.90036 0.90793 0.77037 0.89500 0.93504 0.93046 0.94174 0.95492 0.92821 0.90920 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 71.98 0.71 -1.58 16 2 C -0.12 -2.36 5.83 30.60 0.18 -2.19 16 3 C -0.14 -2.86 4.89 30.59 0.15 -2.71 16 4 C 0.12 3.43 3.24 30.59 0.10 3.53 16 5 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 6 O -0.57 -16.50 12.74 -148.98 -1.90 -18.40 16 7 C -0.01 -0.40 4.48 86.30 0.39 -0.01 16 8 N -0.48 -19.40 6.20 -927.88 -5.75 -25.16 16 9 C 0.02 0.72 7.28 83.58 0.61 1.33 16 10 C 0.02 0.99 3.76 -11.19 -0.04 0.94 16 11 C -0.53 -29.46 8.83 25.60 0.23 -29.24 16 12 H 0.06 3.25 7.81 -2.92 -0.02 3.23 16 13 C 0.01 0.75 5.46 84.66 0.46 1.21 16 14 N -0.92 -55.13 13.26 21.45 0.28 -54.84 16 15 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 19 C 0.01 0.39 7.24 83.58 0.61 0.99 16 20 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 21 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.06 1.29 7.82 -2.39 -0.02 1.27 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.38 8.08 9.05 -74.06 -0.67 7.42 16 28 H 0.09 2.32 8.08 -2.39 -0.02 2.30 16 29 H 0.05 1.48 7.30 -2.39 -0.02 1.46 16 30 H 0.05 2.42 7.38 -2.39 -0.02 2.40 16 31 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.03 1.59 8.11 -2.39 -0.02 1.57 16 33 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.06 2.49 7.87 -2.39 -0.02 2.48 16 Total: -1.00 -63.38 289.00 -1.58 -64.96 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.37 Total: 15.80 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 3.39 Total: -27.72 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -5.47 Total: -80.00 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -1.90 Total: -18.40 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -63.38 -1.58 -64.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252771565.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.479 kcal (2) G-P(sol) polarization free energy of solvation -63.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds