Wall clock time and date at job start Sun Mar 29 2020 22:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47004 * 2 1 4 4 C 1.53001 * 109.47050 * 119.99509 * 2 1 3 5 5 H 1.08999 * 109.47164 * 60.00181 * 4 2 1 6 6 O 1.42903 * 109.47171 * 299.99915 * 4 2 1 7 7 C 1.53003 * 109.47376 * 180.02562 * 4 2 1 8 8 N 1.46900 * 109.47407 * 184.99739 * 7 4 2 9 9 C 1.47476 * 111.00139 * 265.97174 * 8 7 4 10 10 C 1.53511 * 87.92923 * 221.29327 * 9 8 7 11 11 C 1.50707 * 114.34293 * 139.68206 * 10 9 8 12 12 H 1.08000 * 119.99932 * 266.07972 * 11 10 9 13 13 C 1.37874 * 119.99989 * 86.07483 * 11 10 9 14 14 N 1.31520 * 119.99780 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00126 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47081 * 89.99816 * 15 13 11 17 17 H 1.48497 * 109.47099 * 210.00035 * 15 13 11 18 18 H 1.48507 * 109.47204 * 330.00139 * 15 13 11 19 19 C 1.47473 * 110.99932 * 169.99733 * 8 7 4 20 20 H 1.08997 * 109.47549 * 300.00271 * 1 2 3 21 21 H 1.08997 * 109.46932 * 60.00615 * 1 2 3 22 22 H 1.09009 * 109.46962 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47549 * 239.99729 * 2 1 3 24 24 H 1.08999 * 109.47493 * 179.97438 * 3 2 1 25 25 H 1.09005 * 109.46619 * 299.99765 * 3 2 1 26 26 H 1.09001 * 109.47666 * 59.99505 * 3 2 1 27 27 H 0.96700 * 114.00311 * 300.00378 * 6 4 2 28 28 H 1.09005 * 109.46682 * 304.99749 * 7 4 2 29 29 H 1.08999 * 109.47221 * 64.99915 * 7 4 2 30 30 H 1.09005 * 113.47492 * 336.06108 * 9 8 7 31 31 H 1.08996 * 113.48106 * 106.53021 * 9 8 7 32 32 H 1.08996 * 114.17633 * 272.37493 * 10 9 8 33 33 H 0.97005 * 119.99423 * 179.97438 * 14 13 11 34 34 H 1.09003 * 113.47566 * 253.47295 * 19 8 7 35 35 H 1.09000 * 113.48192 * 23.87832 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6766 -1.7488 1.2494 6 8 1.5636 -0.0474 2.4161 7 6 3.5700 -0.7206 1.2497 8 7 4.0597 -1.5149 2.3843 9 6 4.3265 -0.6571 3.5539 10 6 5.6001 -1.4791 3.7963 11 6 6.7956 -0.6631 4.2161 12 1 7.4996 -0.3155 3.4744 13 6 6.9906 -0.3602 5.5469 14 7 6.1336 -0.7838 6.4501 15 14 8.4720 0.6518 6.0672 16 1 8.1180 2.0939 6.0472 17 1 8.8806 0.2614 7.4404 18 1 9.5951 0.4048 5.1274 19 6 5.5143 -1.7368 2.2854 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9562 -0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.8489 0.8742 2.4821 28 1 3.9336 -1.1548 0.3184 29 1 3.9330 0.3032 1.3394 30 1 4.5237 0.3829 3.2937 31 1 3.5855 -0.7607 4.3465 32 1 5.4483 -2.3671 4.4099 33 1 6.2710 -0.5710 7.3865 34 1 5.7799 -2.7555 2.0029 35 1 6.0284 -0.9856 1.6858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253753338.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:39 Heat of formation + Delta-G solvation = -32.987007 kcal Electronic energy + Delta-G solvation = -14747.425805 eV Core-core repulsion = 12359.963793 eV Total energy + Delta-G solvation = -2387.462012 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.32369 -37.58542 -33.60611 -32.66478 -30.19466 -27.28173 -26.67622 -24.67165 -24.12754 -21.47080 -19.90807 -18.54334 -16.73814 -16.16833 -15.62463 -14.85218 -14.81479 -14.32284 -13.90803 -13.55180 -12.91860 -12.76869 -12.14806 -11.92341 -11.82668 -11.67323 -11.30416 -11.14169 -10.98531 -10.89060 -10.60916 -10.42390 -10.21688 -10.02375 -9.34106 -9.10361 -8.88458 -8.40711 -7.90012 -6.02759 -4.07472 3.29242 3.36464 3.39296 4.40276 4.52173 4.77971 4.92039 5.00617 5.21273 5.26398 5.43199 5.57700 5.64338 5.69164 5.77071 5.82562 5.98502 5.98994 6.06766 6.20826 6.29840 6.39599 6.44298 6.54991 6.71424 6.80515 7.25089 7.28282 7.75370 7.94774 7.96399 8.14682 8.40714 8.95560 9.57181 11.06760 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052042 B = 0.006548 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.898007 B = 4274.806730 C = 4319.692769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C -0.154 4.154 4 C 0.122 3.878 5 H 0.099 0.901 6 O -0.551 6.551 7 C -0.012 4.012 8 N -0.479 5.479 9 C 0.016 3.984 10 C 0.038 3.962 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.008 4.008 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.366 0.634 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.262 0.738 34 H 0.060 0.940 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.488 3.119 -11.329 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C -0.211 4.211 4 C 0.062 3.938 5 H 0.117 0.883 6 O -0.356 6.356 7 C -0.141 4.141 8 N -0.201 5.201 9 C -0.113 4.113 10 C 0.019 3.981 11 C -0.555 4.555 12 H 0.074 0.926 13 C -0.136 4.136 14 N -0.522 5.522 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.137 4.137 20 H 0.080 0.920 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.213 0.787 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.290 1.975 -11.001 13.915 hybrid contribution 1.555 1.906 -0.084 2.461 sum -6.735 3.881 -11.084 13.538 Atomic orbital electron populations 1.21730 0.94729 1.01762 1.01569 1.21823 0.96672 0.96993 0.99408 1.21907 1.01410 0.96032 1.01799 1.21891 0.92134 0.96217 0.83552 0.88284 1.86606 1.76404 1.28525 1.44025 1.23382 0.96345 0.97542 0.96865 1.68811 1.14899 1.32749 1.03619 1.23984 1.00124 0.95106 0.92108 1.20122 0.92696 0.96084 0.89156 1.21031 1.08628 1.33359 0.92471 0.92566 1.25020 0.96173 0.95733 0.96685 1.69981 1.35790 1.45063 1.01403 0.86630 0.83159 0.80441 0.77971 1.20691 1.21125 1.19865 1.24021 0.88405 0.99465 1.01788 0.92020 0.93256 0.92822 0.90762 0.92201 0.92658 0.92513 0.78747 0.91566 0.93857 0.93424 0.91563 0.91890 0.92874 0.92190 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.05 37.16 0.34 -1.16 16 2 C -0.13 -1.48 2.81 -90.62 -0.25 -1.74 16 3 C -0.15 -1.63 8.53 37.16 0.32 -1.31 16 4 C 0.12 1.78 3.01 -26.73 -0.08 1.70 16 5 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 6 O -0.55 -8.89 11.96 -35.23 -0.42 -9.31 16 7 C -0.01 -0.20 4.03 -3.82 -0.02 -0.21 16 8 N -0.48 -9.91 6.31 -244.66 -1.54 -11.46 16 9 C 0.02 0.37 6.65 -7.55 -0.05 0.32 16 10 C 0.04 0.99 3.76 -91.24 -0.34 0.64 16 11 C -0.52 -14.23 8.83 -34.44 -0.30 -14.54 16 12 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 13 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 14 N -0.89 -25.88 13.26 55.43 0.74 -25.14 16 15 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.01 -0.17 7.24 -7.56 -0.05 -0.23 16 20 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.58 6.78 -51.93 -0.35 0.23 16 27 H 0.37 5.06 7.33 45.56 0.33 5.40 16 28 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 29 H 0.04 0.72 5.87 -51.93 -0.30 0.41 16 30 H 0.05 1.11 7.38 -51.93 -0.38 0.72 16 31 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.06 1.78 8.11 -51.93 -0.42 1.36 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.06 7.87 -51.93 -0.41 0.65 16 LS Contribution 280.53 15.07 4.23 4.23 Total: -1.00 -29.23 280.53 -7.77 -37.00 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.20 Total: 3.31 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -0.55 Total: -14.76 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.81 Total: -36.60 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.42 Total: -9.31 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.23 -7.77 -37.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253753338.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.014 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds