Wall clock time and date at job start Sun Mar 29 2020 22:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47004 * 2 1 4 4 C 1.53001 * 109.47050 * 119.99509 * 2 1 3 5 5 H 1.08999 * 109.47164 * 60.00181 * 4 2 1 6 6 O 1.42903 * 109.47171 * 299.99915 * 4 2 1 7 7 C 1.53003 * 109.47376 * 180.02562 * 4 2 1 8 8 N 1.46900 * 109.47407 * 184.99739 * 7 4 2 9 9 C 1.47476 * 111.00139 * 265.97174 * 8 7 4 10 10 C 1.53511 * 87.92923 * 221.29327 * 9 8 7 11 11 C 1.50707 * 114.34293 * 139.68206 * 10 9 8 12 12 H 1.08000 * 119.99932 * 266.07972 * 11 10 9 13 13 C 1.37874 * 119.99989 * 86.07483 * 11 10 9 14 14 N 1.31520 * 119.99780 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00126 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47081 * 89.99816 * 15 13 11 17 17 H 1.48497 * 109.47099 * 210.00035 * 15 13 11 18 18 H 1.48507 * 109.47204 * 330.00139 * 15 13 11 19 19 C 1.47473 * 110.99932 * 169.99733 * 8 7 4 20 20 H 1.08997 * 109.47549 * 300.00271 * 1 2 3 21 21 H 1.08997 * 109.46932 * 60.00615 * 1 2 3 22 22 H 1.09009 * 109.46962 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47549 * 239.99729 * 2 1 3 24 24 H 1.08999 * 109.47493 * 179.97438 * 3 2 1 25 25 H 1.09005 * 109.46619 * 299.99765 * 3 2 1 26 26 H 1.09001 * 109.47666 * 59.99505 * 3 2 1 27 27 H 0.96700 * 114.00311 * 300.00378 * 6 4 2 28 28 H 1.09005 * 109.46682 * 304.99749 * 7 4 2 29 29 H 1.08999 * 109.47221 * 64.99915 * 7 4 2 30 30 H 1.09005 * 113.47492 * 336.06108 * 9 8 7 31 31 H 1.08996 * 113.48106 * 106.53021 * 9 8 7 32 32 H 1.08996 * 114.17633 * 272.37493 * 10 9 8 33 33 H 0.97005 * 119.99423 * 179.97438 * 14 13 11 34 34 H 1.09003 * 113.47566 * 253.47295 * 19 8 7 35 35 H 1.09000 * 113.48192 * 23.87832 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6766 -1.7488 1.2494 6 8 1.5636 -0.0474 2.4161 7 6 3.5700 -0.7206 1.2497 8 7 4.0597 -1.5149 2.3843 9 6 4.3265 -0.6571 3.5539 10 6 5.6001 -1.4791 3.7963 11 6 6.7956 -0.6631 4.2161 12 1 7.4996 -0.3155 3.4744 13 6 6.9906 -0.3602 5.5469 14 7 6.1336 -0.7838 6.4501 15 14 8.4720 0.6518 6.0672 16 1 8.1180 2.0939 6.0472 17 1 8.8806 0.2614 7.4404 18 1 9.5951 0.4048 5.1274 19 6 5.5143 -1.7368 2.2854 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9562 -0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.8489 0.8742 2.4821 28 1 3.9336 -1.1548 0.3184 29 1 3.9330 0.3032 1.3394 30 1 4.5237 0.3829 3.2937 31 1 3.5855 -0.7607 4.3465 32 1 5.4483 -2.3671 4.4099 33 1 6.2710 -0.5710 7.3865 34 1 5.7799 -2.7555 2.0029 35 1 6.0284 -0.9856 1.6858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253753338.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:39 Heat of formation + Delta-G solvation = -54.775952 kcal Electronic energy + Delta-G solvation = -14748.370645 eV Core-core repulsion = 12359.963793 eV Total energy + Delta-G solvation = -2388.406851 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.91058 -38.91898 -34.72744 -34.66427 -31.76941 -28.48526 -28.05615 -26.50422 -25.79515 -22.96263 -20.97649 -20.40271 -18.68293 -17.43995 -16.94895 -16.62830 -16.20398 -15.83209 -15.63901 -14.76621 -14.37648 -13.93666 -13.66885 -13.30824 -13.18047 -13.00840 -12.90206 -12.78651 -12.42394 -12.28994 -11.94781 -11.81881 -11.75826 -11.45421 -11.15061 -10.86951 -10.63397 -10.43792 -9.60923 -8.14683 -6.26878 1.42565 1.43518 1.54336 2.42488 3.14293 3.20674 3.58501 3.93762 3.93962 4.06603 4.17727 4.28698 4.44227 4.51500 4.57869 4.73154 4.75957 4.80806 4.89781 4.94997 4.97637 5.01305 5.11513 5.20488 5.29902 5.40578 5.46919 5.55616 5.62010 5.84877 6.29480 6.43267 6.82774 6.84083 7.41811 8.95221 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052042 B = 0.006548 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.898007 B = 4274.806730 C = 4319.692769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C -0.154 4.154 4 C 0.124 3.876 5 H 0.087 0.913 6 O -0.570 6.570 7 C -0.012 4.012 8 N -0.482 5.482 9 C 0.033 3.967 10 C 0.016 3.984 11 C -0.530 4.530 12 H 0.060 0.940 13 C 0.013 3.987 14 N -0.923 5.923 15 Si 0.960 3.040 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.264 1.264 19 C 0.008 3.992 20 H 0.050 0.950 21 H 0.067 0.933 22 H 0.051 0.949 23 H 0.087 0.913 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.374 0.626 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.071 0.929 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.211 4.180 -13.107 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.140 4.140 3 C -0.211 4.211 4 C 0.064 3.936 5 H 0.105 0.895 6 O -0.377 6.377 7 C -0.141 4.141 8 N -0.204 5.204 9 C -0.096 4.096 10 C -0.003 4.003 11 C -0.569 4.569 12 H 0.078 0.922 13 C -0.186 4.186 14 N -0.562 5.562 15 Si 0.785 3.215 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.189 1.189 19 C -0.121 4.121 20 H 0.070 0.930 21 H 0.086 0.914 22 H 0.070 0.930 23 H 0.105 0.895 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.222 0.778 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.014 3.039 -12.803 15.407 hybrid contribution 1.426 1.532 0.441 2.139 sum -6.588 4.571 -12.362 14.735 Atomic orbital electron populations 1.21711 0.94041 1.01826 1.01997 1.21735 0.97143 0.97242 0.97830 1.21906 1.01029 0.95482 1.02649 1.21898 0.90730 0.96178 0.84768 0.89485 1.86581 1.76653 1.29365 1.45078 1.23485 0.97663 0.97168 0.95746 1.68734 1.14400 1.33005 1.04309 1.23652 0.98087 0.95134 0.92764 1.20090 0.93522 0.95142 0.91591 1.21365 1.09226 1.33356 0.92906 0.92177 1.25870 0.99082 0.96903 0.96743 1.70120 1.37814 1.46569 1.01705 0.85531 0.79608 0.78852 0.77518 1.19899 1.20994 1.18851 1.23843 0.89087 1.00492 0.98684 0.93040 0.91354 0.93002 0.89453 0.92742 0.90936 0.92606 0.77776 0.89580 0.93445 0.93285 0.94212 0.95669 0.92861 0.91050 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.05 71.98 0.65 -1.98 16 2 C -0.12 -2.45 2.81 -10.80 -0.03 -2.48 16 3 C -0.15 -2.83 8.53 71.98 0.61 -2.22 16 4 C 0.12 3.45 3.01 30.60 0.09 3.54 16 5 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 6 O -0.57 -18.08 11.96 -148.98 -1.78 -19.86 16 7 C -0.01 -0.36 4.03 86.30 0.35 -0.02 16 8 N -0.48 -19.68 6.31 -927.98 -5.85 -25.53 16 9 C 0.03 1.56 6.65 83.57 0.56 2.12 16 10 C 0.02 0.82 3.76 -11.19 -0.04 0.78 16 11 C -0.53 -29.34 8.83 25.60 0.23 -29.12 16 12 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 13 C 0.01 0.74 5.46 84.65 0.46 1.20 16 14 N -0.92 -55.17 13.26 21.45 0.28 -54.88 16 15 Si 0.96 43.34 29.54 68.60 2.03 45.36 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 C 0.01 0.32 7.24 83.57 0.61 0.93 16 20 H 0.05 1.08 7.68 -2.39 -0.02 1.06 16 21 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.05 1.07 6.54 -2.39 -0.02 1.05 16 25 H 0.07 1.10 8.14 -2.38 -0.02 1.09 16 26 H 0.05 1.03 6.78 -2.39 -0.02 1.02 16 27 H 0.37 10.11 7.33 -74.06 -0.54 9.57 16 28 H 0.09 2.38 8.08 -2.38 -0.02 2.36 16 29 H 0.05 1.47 5.87 -2.39 -0.01 1.46 16 30 H 0.05 2.28 7.38 -2.38 -0.02 2.26 16 31 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.03 1.49 8.11 -2.39 -0.02 1.47 16 33 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 34 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.06 2.48 7.87 -2.39 -0.02 2.46 16 Total: -1.00 -62.65 280.53 -1.33 -63.99 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.51 Total: 18.16 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 3.48 Total: -27.24 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -5.57 Total: -80.41 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -1.78 Total: -19.86 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -62.65 -1.33 -63.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253753338.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.211 kcal (2) G-P(sol) polarization free energy of solvation -62.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds