Wall clock time and date at job start Sun Mar 29 2020 22:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36943 * 119.99548 * 2 1 4 4 H 1.07997 * 119.99260 * 202.02465 * 3 2 1 5 5 C 1.38808 * 120.00101 * 22.02948 * 3 2 1 6 6 N 1.31621 * 120.00001 * 12.56499 * 5 3 2 7 7 Si 1.86796 * 119.99746 * 192.57437 * 5 3 2 8 8 H 1.48501 * 109.47317 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47685 * 119.99817 * 7 5 3 10 10 H 1.48506 * 109.47122 * 239.99471 * 7 5 3 11 11 C 1.46491 * 120.00216 * 180.02562 * 2 1 3 12 12 H 1.09003 * 109.54288 * 179.82346 * 11 2 1 13 13 C 1.53209 * 109.61479 * 59.60447 * 11 2 1 14 14 C 1.53091 * 109.14725 * 183.11453 * 13 11 2 15 15 O 1.42898 * 109.42983 * 57.60725 * 14 13 11 16 16 C 1.42904 * 114.09435 * 298.83698 * 15 14 13 17 17 C 1.52998 * 109.47972 * 181.13974 * 16 15 14 18 18 C 1.52999 * 109.47772 * 301.16888 * 16 15 14 19 19 C 1.53090 * 109.41978 * 61.15474 * 16 15 14 20 20 H 1.08991 * 109.47071 * 274.32079 * 1 2 3 21 21 H 1.08998 * 109.46939 * 34.32394 * 1 2 3 22 22 H 1.09001 * 109.46712 * 154.32090 * 1 2 3 23 23 H 0.97002 * 119.99567 * 180.02562 * 6 5 3 24 24 H 1.08998 * 109.53486 * 63.21130 * 13 11 2 25 25 H 1.08994 * 109.51690 * 303.01253 * 13 11 2 26 26 H 1.09003 * 109.48182 * 297.61501 * 14 13 11 27 27 H 1.09010 * 109.47548 * 177.59650 * 14 13 11 28 28 H 1.08996 * 109.47751 * 59.99427 * 17 16 15 29 29 H 1.09003 * 109.47076 * 179.97438 * 17 16 15 30 30 H 1.09003 * 109.47002 * 299.99718 * 17 16 15 31 31 H 1.08997 * 109.47440 * 60.00322 * 18 16 15 32 32 H 1.09003 * 109.47403 * 180.02562 * 18 16 15 33 33 H 1.09003 * 109.47357 * 300.00322 * 18 16 15 34 34 H 1.08997 * 109.52194 * 62.29774 * 19 16 15 35 35 H 1.09003 * 109.52431 * 182.48870 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1706 1.2201 -0.3508 5 6 1.5316 2.3442 0.4509 6 7 0.3908 2.2702 1.1032 7 14 2.3188 4.0079 0.1316 8 1 3.5881 3.8197 -0.6157 9 1 1.3926 4.8484 -0.6689 10 1 2.6017 4.6782 1.4262 11 6 2.1976 -1.2686 -0.0006 12 1 3.2695 -1.0707 -0.0036 13 6 1.8224 -2.0786 -1.2458 14 6 2.5333 -3.4335 -1.1964 15 8 2.1707 -4.1172 0.0048 16 6 2.5394 -3.4290 1.2018 17 6 2.1290 -4.2632 2.4169 18 6 4.0538 -3.2119 1.2196 19 6 1.8287 -2.0739 1.2492 20 1 -0.3633 0.0774 1.0247 21 1 -0.3633 0.8487 -0.5795 22 1 -0.3633 -0.9262 -0.4453 23 1 -0.0413 3.0796 1.4179 24 1 2.1319 -1.5371 -2.1397 25 1 0.7438 -2.2337 -1.2679 26 1 3.6122 -3.2789 -1.2152 27 1 2.2368 -4.0311 -2.0585 28 1 2.6342 -5.2284 2.3825 29 1 2.4107 -3.7383 3.3298 30 1 1.0500 -4.4173 2.4042 31 1 4.3458 -2.6172 0.3541 32 1 4.3350 -2.6874 2.1328 33 1 4.5596 -4.1768 1.1848 34 1 0.7502 -2.2290 1.2775 35 1 2.1427 -1.5289 2.1395 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255549198.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:05 Heat of formation + Delta-G solvation = -33.140549 kcal Electronic energy + Delta-G solvation = -15402.511783 eV Core-core repulsion = 13015.043113 eV Total energy + Delta-G solvation = -2387.468670 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.54959 -35.64766 -33.19758 -32.31435 -29.81812 -27.39150 -27.03054 -25.93064 -23.78593 -22.35943 -20.12435 -18.41470 -16.75602 -15.74067 -15.56001 -14.79330 -14.33119 -14.05421 -13.56543 -13.01645 -12.80823 -12.56123 -12.06909 -11.96191 -11.83214 -11.50892 -11.29384 -10.88881 -10.87207 -10.66501 -10.51934 -10.28789 -10.13743 -10.03159 -9.85462 -9.32335 -8.98150 -8.51049 -6.71464 -5.68952 -3.14114 3.38355 3.45441 3.47444 4.12610 4.50606 5.15741 5.20184 5.31489 5.38538 5.49830 5.54841 5.73952 5.80684 5.86710 5.96630 5.98661 6.02541 6.08029 6.25946 6.29380 6.43969 6.48038 6.57178 6.71485 6.82902 7.00435 7.08321 7.44720 7.68821 7.77432 7.84003 8.43236 9.27446 9.91542 10.41192 11.35796 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.044163 B = 0.008633 C = 0.008549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.856295 B = 3242.567244 C = 3274.403608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.252 4.252 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.178 3.822 12 H 0.062 0.938 13 C -0.169 4.169 14 C 0.064 3.936 15 O -0.381 6.381 16 C 0.111 3.889 17 C -0.134 4.134 18 C -0.176 4.176 19 C -0.150 4.150 20 H 0.027 0.973 21 H 0.041 0.959 22 H -0.001 1.001 23 H 0.251 0.749 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -10.586 -0.917 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.318 5.318 3 C -0.382 4.382 4 H 0.085 0.915 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.070 3.930 12 H 0.080 0.920 13 C -0.209 4.209 14 C -0.014 4.014 15 O -0.301 6.301 16 C 0.071 3.929 17 C -0.192 4.192 18 C -0.233 4.233 19 C -0.190 4.190 20 H 0.045 0.955 21 H 0.060 0.940 22 H 0.017 0.983 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.894 -10.586 -0.849 11.311 hybrid contribution 0.405 1.322 -0.112 1.387 sum 4.299 -9.264 -0.961 10.258 Atomic orbital electron populations 1.20741 0.82757 0.95437 0.99143 1.43973 1.01832 1.00191 1.85775 1.19274 0.97694 0.85398 1.35804 0.91479 1.25004 0.97852 0.98410 0.98574 1.70094 1.18448 1.26768 1.39995 0.86199 0.78560 0.84442 0.77440 1.20389 1.21666 1.21797 1.20377 0.95813 0.86081 0.90778 0.91964 1.22751 1.01427 0.95701 1.01013 1.22534 0.98241 0.93650 0.86943 1.87864 1.81815 1.46900 1.13494 1.21535 0.93420 0.92604 0.85339 1.21733 1.02001 0.99491 0.95936 1.22422 0.96289 1.01644 1.02986 1.22741 1.00700 0.94251 1.01309 0.95473 0.93981 0.98283 0.93888 0.91452 0.91563 0.93484 0.89899 0.92527 0.91364 0.92099 0.91723 0.91637 0.92642 0.91820 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.16 7.96 59.85 0.48 4.63 16 2 N -0.60 -15.21 2.82 -173.26 -0.49 -15.69 16 3 C -0.25 -7.01 9.60 -15.06 -0.14 -7.15 16 4 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 5 C 0.00 -0.01 5.11 -17.43 -0.09 -0.10 16 6 N -0.91 -26.81 10.63 55.49 0.59 -26.22 16 7 Si 0.90 22.07 29.57 -169.99 -5.03 17.04 16 8 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 C 0.18 3.72 2.37 -67.73 -0.16 3.56 16 12 H 0.06 1.31 6.34 -51.93 -0.33 0.98 16 13 C -0.17 -3.08 5.46 -26.58 -0.15 -3.22 16 14 C 0.06 0.98 6.51 37.20 0.24 1.22 16 15 O -0.38 -6.39 10.24 -35.23 -0.36 -6.75 16 16 C 0.11 1.77 1.11 -90.58 -0.10 1.67 16 17 C -0.13 -1.84 8.85 37.16 0.33 -1.51 16 18 C -0.18 -2.52 7.93 37.16 0.29 -2.23 16 19 C -0.15 -2.89 4.25 -26.59 -0.11 -3.00 16 20 H 0.03 0.74 7.41 -51.93 -0.38 0.36 16 21 H 0.04 1.14 7.21 -51.93 -0.37 0.77 16 22 H 0.00 -0.03 6.38 -51.93 -0.33 -0.36 16 23 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.07 1.27 6.56 -51.93 -0.34 0.92 16 26 H 0.05 0.67 6.34 -51.93 -0.33 0.35 16 27 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.96 4.97 -51.93 -0.26 0.70 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.30 7.59 -51.93 -0.39 0.91 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 267.79 15.07 4.04 4.04 Total: -1.00 -29.85 267.79 -6.33 -36.18 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.67 Total: -2.46 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 0.59 Total: -6.14 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.10 Total: -41.91 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.36 Total: -6.75 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.85 -6.33 -36.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255549198.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.040 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds