Wall clock time and date at job start Sun Mar 29 2020 22:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36943 * 119.99548 * 2 1 4 4 H 1.07997 * 119.99260 * 202.02465 * 3 2 1 5 5 C 1.38808 * 120.00101 * 22.02948 * 3 2 1 6 6 N 1.31621 * 120.00001 * 12.56499 * 5 3 2 7 7 Si 1.86796 * 119.99746 * 192.57437 * 5 3 2 8 8 H 1.48501 * 109.47317 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47685 * 119.99817 * 7 5 3 10 10 H 1.48506 * 109.47122 * 239.99471 * 7 5 3 11 11 C 1.46491 * 120.00216 * 180.02562 * 2 1 3 12 12 H 1.09003 * 109.54288 * 179.82346 * 11 2 1 13 13 C 1.53209 * 109.61479 * 59.60447 * 11 2 1 14 14 C 1.53091 * 109.14725 * 183.11453 * 13 11 2 15 15 O 1.42898 * 109.42983 * 57.60725 * 14 13 11 16 16 C 1.42904 * 114.09435 * 298.83698 * 15 14 13 17 17 C 1.52998 * 109.47972 * 181.13974 * 16 15 14 18 18 C 1.52999 * 109.47772 * 301.16888 * 16 15 14 19 19 C 1.53090 * 109.41978 * 61.15474 * 16 15 14 20 20 H 1.08991 * 109.47071 * 274.32079 * 1 2 3 21 21 H 1.08998 * 109.46939 * 34.32394 * 1 2 3 22 22 H 1.09001 * 109.46712 * 154.32090 * 1 2 3 23 23 H 0.97002 * 119.99567 * 180.02562 * 6 5 3 24 24 H 1.08998 * 109.53486 * 63.21130 * 13 11 2 25 25 H 1.08994 * 109.51690 * 303.01253 * 13 11 2 26 26 H 1.09003 * 109.48182 * 297.61501 * 14 13 11 27 27 H 1.09010 * 109.47548 * 177.59650 * 14 13 11 28 28 H 1.08996 * 109.47751 * 59.99427 * 17 16 15 29 29 H 1.09003 * 109.47076 * 179.97438 * 17 16 15 30 30 H 1.09003 * 109.47002 * 299.99718 * 17 16 15 31 31 H 1.08997 * 109.47440 * 60.00322 * 18 16 15 32 32 H 1.09003 * 109.47403 * 180.02562 * 18 16 15 33 33 H 1.09003 * 109.47357 * 300.00322 * 18 16 15 34 34 H 1.08997 * 109.52194 * 62.29774 * 19 16 15 35 35 H 1.09003 * 109.52431 * 182.48870 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1706 1.2201 -0.3508 5 6 1.5316 2.3442 0.4509 6 7 0.3908 2.2702 1.1032 7 14 2.3188 4.0079 0.1316 8 1 3.5881 3.8197 -0.6157 9 1 1.3926 4.8484 -0.6689 10 1 2.6017 4.6782 1.4262 11 6 2.1976 -1.2686 -0.0006 12 1 3.2695 -1.0707 -0.0036 13 6 1.8224 -2.0786 -1.2458 14 6 2.5333 -3.4335 -1.1964 15 8 2.1707 -4.1172 0.0048 16 6 2.5394 -3.4290 1.2018 17 6 2.1290 -4.2632 2.4169 18 6 4.0538 -3.2119 1.2196 19 6 1.8287 -2.0739 1.2492 20 1 -0.3633 0.0774 1.0247 21 1 -0.3633 0.8487 -0.5795 22 1 -0.3633 -0.9262 -0.4453 23 1 -0.0413 3.0796 1.4179 24 1 2.1319 -1.5371 -2.1397 25 1 0.7438 -2.2337 -1.2679 26 1 3.6122 -3.2789 -1.2152 27 1 2.2368 -4.0311 -2.0585 28 1 2.6342 -5.2284 2.3825 29 1 2.4107 -3.7383 3.3298 30 1 1.0500 -4.4173 2.4042 31 1 4.3458 -2.6172 0.3541 32 1 4.3350 -2.6874 2.1328 33 1 4.5596 -4.1768 1.1848 34 1 0.7502 -2.2290 1.2775 35 1 2.1427 -1.5289 2.1395 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255549198.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:05 Heat of formation + Delta-G solvation = -51.506577 kcal Electronic energy + Delta-G solvation = -15403.308193 eV Core-core repulsion = 13015.043113 eV Total energy + Delta-G solvation = -2388.265080 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93883 -37.48679 -34.47799 -34.15815 -31.66157 -28.80004 -28.29830 -27.93514 -25.52546 -23.93156 -21.71063 -19.88106 -18.80241 -17.21508 -17.03624 -16.53969 -15.92232 -15.47546 -15.15027 -14.75528 -14.51084 -14.06039 -13.79817 -13.26006 -12.94780 -12.85788 -12.83999 -12.78868 -12.61343 -12.34151 -12.19223 -11.99358 -11.89155 -11.81018 -11.63881 -10.81342 -10.66001 -10.33898 -8.79306 -7.83206 -5.31042 1.44492 1.45574 1.56161 2.49001 2.89553 3.29483 3.58592 3.89111 3.98672 4.04049 4.18279 4.35043 4.46731 4.53438 4.58640 4.71790 4.83081 4.83785 4.86394 4.92579 5.01107 5.09629 5.16503 5.20953 5.27013 5.40006 5.43090 5.54367 5.61838 5.68257 6.31860 6.41340 7.13945 7.86761 8.31973 9.20356 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.044163 B = 0.008633 C = 0.008549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.856295 B = 3242.567244 C = 3274.403608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.613 5.613 3 C -0.261 4.261 4 H 0.071 0.929 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.970 3.030 8 H -0.265 1.265 9 H -0.292 1.292 10 H -0.292 1.292 11 C 0.170 3.830 12 H 0.061 0.939 13 C -0.161 4.161 14 C 0.067 3.933 15 O -0.388 6.388 16 C 0.112 3.888 17 C -0.133 4.133 18 C -0.173 4.173 19 C -0.141 4.141 20 H -0.001 1.001 21 H 0.015 0.985 22 H 0.024 0.976 23 H 0.247 0.753 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.600 -11.857 -1.476 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.335 5.335 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.251 4.251 6 N -0.587 5.587 7 Si 0.798 3.202 8 H -0.189 1.189 9 H -0.219 1.219 10 H -0.219 1.219 11 C 0.064 3.936 12 H 0.079 0.921 13 C -0.200 4.200 14 C -0.010 4.010 15 O -0.307 6.307 16 C 0.072 3.928 17 C -0.190 4.190 18 C -0.230 4.230 19 C -0.181 4.181 20 H 0.018 0.982 21 H 0.034 0.966 22 H 0.042 0.958 23 H 0.056 0.944 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.128 0.872 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.418 -11.895 -1.420 13.147 hybrid contribution -0.055 1.671 0.049 1.673 sum 5.363 -10.223 -1.370 11.626 Atomic orbital electron populations 1.20410 0.83241 0.95421 0.97136 1.44220 1.01882 1.01404 1.85965 1.19619 0.97929 0.86560 1.35029 0.91099 1.25799 0.98592 1.01874 0.98839 1.70262 1.19906 1.27267 1.41302 0.85164 0.78050 0.79942 0.77061 1.18938 1.21864 1.21934 1.20613 0.95246 0.84885 0.92881 0.92119 1.22629 1.01013 0.97106 0.99283 1.22633 0.98801 0.92116 0.87473 1.87875 1.82106 1.46869 1.13893 1.21575 0.94191 0.90839 0.86186 1.21741 1.01904 1.00186 0.95137 1.22387 0.94886 1.02837 1.02881 1.22593 0.99909 0.96123 0.99483 0.98238 0.96628 0.95773 0.94368 0.91445 0.92755 0.91913 0.87158 0.90497 0.90489 0.92671 0.92386 0.91336 0.90386 0.93642 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.52 7.96 127.77 1.02 10.54 16 2 N -0.61 -31.58 2.82 -702.06 -1.98 -33.56 16 3 C -0.26 -14.61 9.60 84.03 0.81 -13.80 16 4 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 5 C -0.06 -3.22 5.11 84.86 0.43 -2.79 16 6 N -0.94 -56.93 10.63 21.65 0.23 -56.70 16 7 Si 0.97 45.70 29.57 68.60 2.03 47.73 16 8 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 9 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 10 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 11 C 0.17 7.05 2.37 45.12 0.11 7.15 16 12 H 0.06 2.51 6.34 -2.39 -0.02 2.50 16 13 C -0.16 -5.61 5.46 30.69 0.17 -5.44 16 14 C 0.07 1.85 6.51 72.01 0.47 2.32 16 15 O -0.39 -11.91 10.24 -148.98 -1.53 -13.43 16 16 C 0.11 3.34 1.11 -10.76 -0.01 3.33 16 17 C -0.13 -3.33 8.85 71.98 0.64 -2.69 16 18 C -0.17 -4.48 7.93 71.98 0.57 -3.90 16 19 C -0.14 -5.39 4.25 30.69 0.13 -5.26 16 20 H 0.00 -0.04 7.41 -2.39 -0.02 -0.06 16 21 H 0.01 0.85 7.21 -2.39 -0.02 0.83 16 22 H 0.02 1.10 6.38 -2.39 -0.02 1.09 16 23 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.05 2.01 6.56 -2.39 -0.02 2.00 16 26 H 0.06 1.58 6.34 -2.39 -0.02 1.56 16 27 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.57 4.97 -2.39 -0.01 1.56 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.87 7.59 -2.39 -0.02 1.85 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -63.90 267.79 4.12 -59.78 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.05 Total: 6.73 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 4.33 Total: -10.55 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -1.75 Total: -90.26 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -1.53 Total: -13.43 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -63.90 4.12 -59.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255549198.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.273 kcal (2) G-P(sol) polarization free energy of solvation -63.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds