Wall clock time and date at job start Sun Mar 29 2020 22:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00198 * 2 1 4 4 H 1.07998 * 119.99914 * 154.65244 * 3 2 1 5 5 C 1.38818 * 119.99941 * 334.65899 * 3 2 1 6 6 N 1.31618 * 119.99903 * 4.04892 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 184.04626 * 5 3 2 8 8 H 1.48491 * 109.47600 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.46884 * 120.00248 * 7 5 3 10 10 H 1.48507 * 109.46690 * 239.99647 * 7 5 3 11 11 C 1.46499 * 119.99792 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.54240 * 180.17676 * 11 2 1 13 13 C 1.53186 * 109.54239 * 300.43870 * 11 2 1 14 14 C 1.53093 * 109.16266 * 176.84776 * 13 11 2 15 15 O 1.42897 * 109.41652 * 302.39191 * 14 13 11 16 16 C 1.42904 * 114.09986 * 61.16018 * 15 14 13 17 17 C 1.53001 * 109.48431 * 178.85812 * 16 15 14 18 18 C 1.53005 * 109.48293 * 58.81909 * 16 15 14 19 19 C 1.53092 * 109.41213 * 298.84282 * 16 15 14 20 20 H 1.09003 * 109.47923 * 84.47631 * 1 2 3 21 21 H 1.08998 * 109.46952 * 324.47783 * 1 2 3 22 22 H 1.09004 * 109.47480 * 204.48134 * 1 2 3 23 23 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 24 24 H 1.08998 * 109.51856 * 296.75382 * 13 11 2 25 25 H 1.08999 * 109.52129 * 56.94464 * 13 11 2 26 26 H 1.08998 * 109.47750 * 182.40926 * 14 13 11 27 27 H 1.09000 * 109.48631 * 62.38227 * 14 13 11 28 28 H 1.09001 * 109.47042 * 179.97438 * 17 16 15 29 29 H 1.08992 * 109.46942 * 299.94377 * 17 16 15 30 30 H 1.08998 * 109.46645 * 59.94228 * 17 16 15 31 31 H 1.08999 * 109.47419 * 300.06527 * 18 16 15 32 32 H 1.09000 * 109.46283 * 60.05906 * 18 16 15 33 33 H 1.08996 * 109.47474 * 180.02562 * 18 16 15 34 34 H 1.08995 * 109.52344 * 297.69932 * 19 16 15 35 35 H 1.09004 * 109.57735 * 177.54235 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1517 1.2308 0.4004 5 6 1.5558 2.3302 -0.5146 6 7 0.3071 2.2941 -0.9291 7 14 2.5289 3.9213 -0.6185 8 1 3.8992 3.6990 -0.0913 9 1 2.6082 4.3614 -2.0346 10 1 1.8526 4.9688 0.1882 11 6 2.1974 -1.2687 -0.0006 12 1 3.2693 -1.0709 0.0027 13 6 1.8202 -2.0787 1.2437 14 6 2.5293 -3.4346 1.1947 15 8 2.1667 -4.1172 -0.0072 16 6 2.5373 -3.4291 -1.2036 17 6 2.1268 -4.2622 -2.4194 18 6 4.0520 -3.2139 -1.2201 19 6 1.8285 -2.0730 -1.2509 20 1 -0.3635 0.0989 -1.0229 21 1 -0.3633 0.8364 0.5971 22 1 -0.3634 -0.9353 0.4259 23 1 -0.1077 3.0936 -1.2889 24 1 2.1297 -1.5379 2.1380 25 1 0.7413 -2.2325 1.2650 26 1 2.2311 -4.0321 2.0562 27 1 3.6084 -3.2816 1.2144 28 1 2.4091 -3.7369 -3.3319 29 1 2.6315 -5.2276 -2.3855 30 1 1.0477 -4.4156 -2.4071 31 1 4.3443 -2.6208 -0.3535 32 1 4.5565 -4.1795 -1.1863 33 1 4.3345 -2.6887 -2.1324 34 1 0.7498 -2.2266 -1.2801 35 1 2.1429 -1.5274 -2.1407 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255549199.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:08 Heat of formation + Delta-G solvation = -31.726311 kcal Electronic energy + Delta-G solvation = -15409.798575 eV Core-core repulsion = 13022.391232 eV Total energy + Delta-G solvation = -2387.407344 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54715 -35.63838 -33.19830 -32.32607 -29.79501 -27.38547 -27.02948 -25.93045 -23.76766 -22.33745 -20.11869 -18.40488 -16.78171 -15.73913 -15.55763 -14.80653 -14.32541 -14.03948 -13.56883 -12.99692 -12.78107 -12.55751 -12.04389 -11.97023 -11.82239 -11.49858 -11.29379 -10.97311 -10.80892 -10.66218 -10.49486 -10.21195 -10.15019 -10.02637 -9.87815 -9.32664 -8.97715 -8.47491 -6.68362 -5.69899 -3.16321 3.37899 3.44796 3.46658 4.12651 4.49587 5.14901 5.20127 5.31090 5.40845 5.51000 5.54350 5.74323 5.80576 5.86878 5.97017 5.98561 6.02565 6.08658 6.25755 6.29796 6.44444 6.48211 6.57715 6.71580 6.86712 7.01867 7.09471 7.55248 7.69007 7.80198 7.89988 8.46030 9.29763 9.91736 10.42593 11.34428 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.042369 B = 0.008808 C = 0.008611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.697159 B = 3178.120310 C = 3251.012522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.600 5.600 3 C -0.253 4.253 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.909 5.909 7 Si 0.902 3.098 8 H -0.279 1.279 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.179 3.821 12 H 0.062 0.938 13 C -0.170 4.170 14 C 0.064 3.936 15 O -0.381 6.381 16 C 0.111 3.889 17 C -0.134 4.134 18 C -0.176 4.176 19 C -0.150 4.150 20 H 0.023 0.977 21 H 0.050 0.950 22 H -0.007 1.007 23 H 0.251 0.749 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.343 -10.579 0.393 11.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.321 5.321 3 C -0.382 4.382 4 H 0.085 0.915 5 C -0.194 4.194 6 N -0.554 5.554 7 Si 0.732 3.268 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.070 3.930 12 H 0.080 0.920 13 C -0.209 4.209 14 C -0.014 4.014 15 O -0.301 6.301 16 C 0.071 3.929 17 C -0.192 4.192 18 C -0.233 4.233 19 C -0.190 4.190 20 H 0.041 0.959 21 H 0.069 0.931 22 H 0.011 0.989 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.130 -10.575 0.325 11.357 hybrid contribution 0.518 1.282 -0.103 1.386 sum 4.649 -9.293 0.222 10.393 Atomic orbital electron populations 1.20816 0.82570 0.95224 0.99130 1.43951 1.01929 1.00119 1.86144 1.19270 0.99097 0.86440 1.33405 0.91488 1.25160 0.96590 0.98708 0.98971 1.70106 1.11219 1.27742 1.46377 0.86207 0.79511 0.83658 0.77382 1.20379 1.21614 1.21760 1.20371 0.95789 0.86085 0.90750 0.91977 1.22757 1.01469 0.95676 1.01033 1.22534 0.98236 0.93683 0.86914 1.87862 1.81742 1.46972 1.13491 1.21531 0.93403 0.92588 0.85363 1.21732 1.02007 0.99503 0.95919 1.22422 0.96290 1.01650 1.02983 1.22734 1.00732 0.94254 1.01278 0.95881 0.93127 0.98856 0.93855 0.91499 0.91531 0.89905 0.93496 0.91379 0.92521 0.92093 0.91708 0.92643 0.91647 0.91810 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.27 7.92 59.84 0.47 4.75 16 2 N -0.60 -15.34 2.83 -173.27 -0.49 -15.83 16 3 C -0.25 -7.02 9.59 -15.06 -0.14 -7.17 16 4 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 5 C 0.00 0.10 5.38 -17.43 -0.09 0.00 16 6 N -0.91 -26.75 10.12 55.49 0.56 -26.19 16 7 Si 0.90 22.00 29.56 -169.99 -5.02 16.97 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 C 0.18 3.74 2.37 -67.74 -0.16 3.58 16 12 H 0.06 1.31 6.36 -51.93 -0.33 0.98 16 13 C -0.17 -3.11 5.45 -26.59 -0.15 -3.25 16 14 C 0.06 0.98 6.51 37.21 0.24 1.22 16 15 O -0.38 -6.40 10.24 -35.23 -0.36 -6.76 16 16 C 0.11 1.77 1.11 -90.57 -0.10 1.67 16 17 C -0.13 -1.84 8.85 37.16 0.33 -1.51 16 18 C -0.18 -2.52 7.93 37.16 0.29 -2.22 16 19 C -0.15 -2.88 4.25 -26.59 -0.11 -2.99 16 20 H 0.02 0.63 7.44 -51.93 -0.39 0.25 16 21 H 0.05 1.40 7.03 -51.93 -0.37 1.04 16 22 H -0.01 -0.16 6.37 -51.93 -0.33 -0.49 16 23 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.07 1.28 6.55 -51.93 -0.34 0.94 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.67 6.34 -51.93 -0.33 0.35 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.96 4.98 -51.93 -0.26 0.70 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.30 7.58 -51.93 -0.39 0.91 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 267.36 15.07 4.03 4.03 Total: -1.00 -29.74 267.36 -6.36 -36.10 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.66 Total: -2.41 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 0.58 Total: -5.92 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.07 Total: -42.02 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.36 Total: -6.76 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.74 -6.36 -36.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255549199.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.378 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds