Wall clock time and date at job start Sun Mar 29 2020 22:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00198 * 2 1 4 4 H 1.07998 * 119.99914 * 154.65244 * 3 2 1 5 5 C 1.38818 * 119.99941 * 334.65899 * 3 2 1 6 6 N 1.31618 * 119.99903 * 4.04892 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 184.04626 * 5 3 2 8 8 H 1.48491 * 109.47600 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.46884 * 120.00248 * 7 5 3 10 10 H 1.48507 * 109.46690 * 239.99647 * 7 5 3 11 11 C 1.46499 * 119.99792 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.54240 * 180.17676 * 11 2 1 13 13 C 1.53186 * 109.54239 * 300.43870 * 11 2 1 14 14 C 1.53093 * 109.16266 * 176.84776 * 13 11 2 15 15 O 1.42897 * 109.41652 * 302.39191 * 14 13 11 16 16 C 1.42904 * 114.09986 * 61.16018 * 15 14 13 17 17 C 1.53001 * 109.48431 * 178.85812 * 16 15 14 18 18 C 1.53005 * 109.48293 * 58.81909 * 16 15 14 19 19 C 1.53092 * 109.41213 * 298.84282 * 16 15 14 20 20 H 1.09003 * 109.47923 * 84.47631 * 1 2 3 21 21 H 1.08998 * 109.46952 * 324.47783 * 1 2 3 22 22 H 1.09004 * 109.47480 * 204.48134 * 1 2 3 23 23 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 24 24 H 1.08998 * 109.51856 * 296.75382 * 13 11 2 25 25 H 1.08999 * 109.52129 * 56.94464 * 13 11 2 26 26 H 1.08998 * 109.47750 * 182.40926 * 14 13 11 27 27 H 1.09000 * 109.48631 * 62.38227 * 14 13 11 28 28 H 1.09001 * 109.47042 * 179.97438 * 17 16 15 29 29 H 1.08992 * 109.46942 * 299.94377 * 17 16 15 30 30 H 1.08998 * 109.46645 * 59.94228 * 17 16 15 31 31 H 1.08999 * 109.47419 * 300.06527 * 18 16 15 32 32 H 1.09000 * 109.46283 * 60.05906 * 18 16 15 33 33 H 1.08996 * 109.47474 * 180.02562 * 18 16 15 34 34 H 1.08995 * 109.52344 * 297.69932 * 19 16 15 35 35 H 1.09004 * 109.57735 * 177.54235 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1517 1.2308 0.4004 5 6 1.5558 2.3302 -0.5146 6 7 0.3071 2.2941 -0.9291 7 14 2.5289 3.9213 -0.6185 8 1 3.8992 3.6990 -0.0913 9 1 2.6082 4.3614 -2.0346 10 1 1.8526 4.9688 0.1882 11 6 2.1974 -1.2687 -0.0006 12 1 3.2693 -1.0709 0.0027 13 6 1.8202 -2.0787 1.2437 14 6 2.5293 -3.4346 1.1947 15 8 2.1667 -4.1172 -0.0072 16 6 2.5373 -3.4291 -1.2036 17 6 2.1268 -4.2622 -2.4194 18 6 4.0520 -3.2139 -1.2201 19 6 1.8285 -2.0730 -1.2509 20 1 -0.3635 0.0989 -1.0229 21 1 -0.3633 0.8364 0.5971 22 1 -0.3634 -0.9353 0.4259 23 1 -0.1077 3.0936 -1.2889 24 1 2.1297 -1.5379 2.1380 25 1 0.7413 -2.2325 1.2650 26 1 2.2311 -4.0321 2.0562 27 1 3.6084 -3.2816 1.2144 28 1 2.4091 -3.7369 -3.3319 29 1 2.6315 -5.2276 -2.3855 30 1 1.0477 -4.4156 -2.4071 31 1 4.3443 -2.6208 -0.3535 32 1 4.5565 -4.1795 -1.1863 33 1 4.3345 -2.6887 -2.1324 34 1 0.7498 -2.2266 -1.2801 35 1 2.1429 -1.5274 -2.1407 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255549199.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:07 Heat of formation + Delta-G solvation = -49.962740 kcal Electronic energy + Delta-G solvation = -15410.589366 eV Core-core repulsion = 13022.391232 eV Total energy + Delta-G solvation = -2388.198135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.93656 -37.48146 -34.47868 -34.16890 -31.63879 -28.79094 -28.29790 -27.94160 -25.50154 -23.91819 -21.70723 -19.87470 -18.82702 -17.22995 -17.03317 -16.54253 -15.89009 -15.46688 -15.16031 -14.70887 -14.52320 -14.04481 -13.77266 -13.25074 -12.96755 -12.92896 -12.80070 -12.74003 -12.60872 -12.32644 -12.18135 -12.00196 -11.88634 -11.81847 -11.61729 -10.81434 -10.63336 -10.34403 -8.75519 -7.84178 -5.32955 1.44504 1.45366 1.55899 2.48046 2.89572 3.29295 3.60844 3.89650 3.98925 4.03937 4.18671 4.35339 4.47247 4.53737 4.58772 4.72420 4.83660 4.85366 4.86618 4.92905 5.01552 5.10036 5.16668 5.23445 5.31561 5.40340 5.44729 5.55284 5.62875 5.74230 6.33933 6.41430 7.15869 7.87186 8.33453 9.19423 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.042369 B = 0.008808 C = 0.008611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.697159 B = 3178.120310 C = 3251.012522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.616 5.616 3 C -0.263 4.263 4 H 0.072 0.928 5 C -0.053 4.053 6 N -0.940 5.940 7 Si 0.970 3.030 8 H -0.265 1.265 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.171 3.829 12 H 0.061 0.939 13 C -0.162 4.162 14 C 0.067 3.933 15 O -0.388 6.388 16 C 0.112 3.888 17 C -0.132 4.132 18 C -0.173 4.173 19 C -0.141 4.141 20 H -0.004 1.004 21 H 0.022 0.978 22 H 0.016 0.984 23 H 0.247 0.753 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.110 0.890 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 -11.847 0.674 13.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.339 5.339 3 C -0.393 4.393 4 H 0.089 0.911 5 C -0.248 4.248 6 N -0.588 5.588 7 Si 0.798 3.202 8 H -0.189 1.189 9 H -0.218 1.218 10 H -0.219 1.219 11 C 0.065 3.935 12 H 0.080 0.920 13 C -0.201 4.201 14 C -0.010 4.010 15 O -0.308 6.308 16 C 0.072 3.928 17 C -0.190 4.190 18 C -0.230 4.230 19 C -0.181 4.181 20 H 0.014 0.986 21 H 0.041 0.959 22 H 0.035 0.965 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.128 0.872 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.798 -11.880 0.617 13.234 hybrid contribution 0.006 1.637 -0.160 1.645 sum 5.804 -10.243 0.457 11.782 Atomic orbital electron populations 1.20451 0.83185 0.95093 0.97032 1.44196 1.01909 1.01371 1.86423 1.19613 0.99237 0.87538 1.32882 0.91072 1.25941 0.97511 1.02088 0.99223 1.70288 1.12635 1.28303 1.47528 0.85156 0.78646 0.79458 0.76950 1.18885 1.21813 1.21894 1.20601 0.95256 0.84835 0.92834 0.92036 1.22639 1.00973 0.97156 0.99352 1.22624 0.98810 0.92092 0.87455 1.87874 1.82045 1.46948 1.13904 1.21582 0.94213 0.90830 0.86182 1.21741 1.01888 1.00199 0.95135 1.22389 0.94843 1.02848 1.02918 1.22589 0.99905 0.96124 0.99492 0.98594 0.95949 0.96519 0.94349 0.91599 0.92855 0.87225 0.91876 0.90421 0.90514 0.92695 0.92388 0.90410 0.91248 0.93693 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.86 7.92 127.77 1.01 10.87 16 2 N -0.62 -31.91 2.83 -702.11 -1.99 -33.90 16 3 C -0.26 -14.70 9.59 84.04 0.81 -13.89 16 4 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 5 C -0.05 -3.03 5.38 84.86 0.46 -2.57 16 6 N -0.94 -56.76 10.12 21.65 0.22 -56.55 16 7 Si 0.97 45.54 29.56 68.60 2.03 47.57 16 8 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 9 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 11 C 0.17 7.10 2.37 45.11 0.11 7.21 16 12 H 0.06 2.54 6.36 -2.39 -0.02 2.53 16 13 C -0.16 -5.70 5.45 30.69 0.17 -5.54 16 14 C 0.07 1.87 6.51 72.01 0.47 2.34 16 15 O -0.39 -11.95 10.24 -148.98 -1.52 -13.48 16 16 C 0.11 3.33 1.11 -10.76 -0.01 3.32 16 17 C -0.13 -3.31 8.85 71.98 0.64 -2.67 16 18 C -0.17 -4.44 7.93 71.98 0.57 -3.87 16 19 C -0.14 -5.37 4.25 30.68 0.13 -5.24 16 20 H 0.00 -0.25 7.44 -2.39 -0.02 -0.26 16 21 H 0.02 1.26 7.03 -2.39 -0.02 1.25 16 22 H 0.02 0.77 6.37 -2.39 -0.02 0.76 16 23 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 24 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.05 2.01 6.55 -2.39 -0.02 1.99 16 26 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.06 1.59 6.34 -2.39 -0.02 1.58 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.56 4.98 -2.39 -0.01 1.55 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.85 7.58 -2.39 -0.02 1.83 16 35 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -63.72 267.36 4.13 -59.60 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.05 Total: 6.80 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 4.34 Total: -10.04 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -1.77 Total: -90.44 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -1.52 Total: -13.48 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -63.72 4.13 -59.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255549199.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.634 kcal (2) G-P(sol) polarization free energy of solvation -63.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds