Wall clock time and date at job start Sun Mar 29 2020 21:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47032 * 2 1 4 4 C 1.37098 * 119.99983 * 264.74758 * 3 2 1 5 5 H 1.08000 * 120.00412 * 146.16734 * 4 3 2 6 6 C 1.38951 * 120.00038 * 326.16856 * 4 3 2 7 7 N 1.31418 * 120.00097 * 337.68257 * 6 4 3 8 8 Si 1.86798 * 120.00378 * 157.68356 * 6 4 3 9 9 H 1.48499 * 109.46682 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47505 * 120.00130 * 8 6 4 11 11 H 1.48508 * 109.47029 * 240.00277 * 8 6 4 12 12 C 1.34771 * 120.00500 * 84.74840 * 3 2 1 13 13 O 1.21290 * 120.00881 * 179.97438 * 12 3 2 14 14 C 1.50706 * 119.99971 * 0.02562 * 12 3 2 15 15 C 1.52991 * 109.47432 * 179.97438 * 14 12 3 16 16 C 1.54045 * 113.81644 * 86.49307 * 15 14 12 17 17 O 1.44569 * 85.38201 * 136.86410 * 16 15 14 18 18 C 1.44169 * 93.32941 * 335.80069 * 17 16 15 19 19 H 1.09002 * 109.47087 * 300.00221 * 1 2 3 20 20 H 1.09000 * 109.47329 * 60.00203 * 1 2 3 21 21 H 1.09005 * 109.47307 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47087 * 239.99779 * 2 1 3 23 23 H 1.09004 * 109.46841 * 119.99882 * 2 1 3 24 24 H 0.96995 * 120.00623 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.47329 * 59.99437 * 14 12 3 26 26 H 1.09004 * 109.46792 * 300.00465 * 14 12 3 27 27 H 1.09001 * 113.00321 * 314.66894 * 15 14 12 28 28 H 1.09000 * 113.86611 * 251.07476 * 16 15 14 29 29 H 1.09000 * 113.86273 * 22.77957 * 16 15 14 30 30 H 1.08997 * 113.86928 * 270.04630 * 18 17 16 31 31 H 1.09004 * 113.97940 * 138.35171 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9912 -1.1823 5 1 2.1815 3.0506 -1.3089 6 6 2.9006 1.2466 -2.2178 7 7 3.5051 0.1087 -1.9595 8 14 2.7825 1.8629 -3.9773 9 1 2.0581 3.1590 -4.0001 10 1 4.1484 2.0488 -4.5294 11 1 2.0464 0.8704 -4.8011 12 6 2.1422 2.0522 1.1622 13 8 2.5469 3.1956 1.1623 14 6 1.7790 1.3815 2.4620 15 6 2.0105 2.3541 3.6200 16 6 0.8107 3.2766 3.9069 17 8 1.0762 2.9944 5.2997 18 6 1.7350 1.7457 5.0080 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.8896 -0.4114 -2.6823 25 1 2.4010 0.4972 2.6008 26 1 0.7297 1.0874 2.4382 27 1 2.9630 2.8796 3.5509 28 1 0.9769 4.3166 3.6261 29 1 -0.1421 2.8843 3.5513 30 1 1.0638 0.8871 4.9878 31 1 2.6340 1.5705 5.5990 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331901133.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:37 Heat of formation + Delta-G solvation = -69.224835 kcal Electronic energy + Delta-G solvation = -14657.382335 eV Core-core repulsion = 12132.515838 eV Total energy + Delta-G solvation = -2524.866496 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.42300 -40.06186 -36.89633 -34.13751 -32.91388 -31.13366 -28.19736 -27.39590 -26.13186 -23.88460 -21.41796 -20.44122 -18.72363 -17.82066 -17.30579 -17.04307 -16.47792 -16.31506 -15.74741 -15.63454 -14.51254 -14.42940 -13.98983 -13.62788 -13.51749 -13.18533 -12.91419 -12.73320 -12.56956 -12.19568 -12.03098 -11.84353 -11.74457 -11.47891 -10.86839 -10.60440 -10.28704 -9.44641 -8.33903 -6.02557 1.35096 1.41133 1.54414 2.08313 2.29972 2.76410 3.01784 3.07005 3.45823 3.91975 4.08915 4.27107 4.34692 4.42906 4.48380 4.63640 4.69578 4.71753 4.82269 4.92464 5.05779 5.13130 5.19999 5.30591 5.35690 5.47789 5.61473 6.22143 6.55992 7.20860 7.52535 8.11567 8.68114 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051056 B = 0.008087 C = 0.007621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.280471 B = 3461.526373 C = 3673.111676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.092 3.908 3 N -0.456 5.456 4 C -0.342 4.342 5 H 0.061 0.939 6 C 0.003 3.997 7 N -0.887 5.887 8 Si 0.978 3.022 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.263 1.263 12 C 0.441 3.559 13 O -0.632 6.632 14 C -0.118 4.118 15 C -0.140 4.140 16 C 0.043 3.957 17 O -0.408 6.408 18 C 0.049 3.951 19 H 0.057 0.943 20 H 0.037 0.963 21 H 0.084 0.916 22 H 0.087 0.913 23 H 0.070 0.930 24 H 0.273 0.727 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.087 -4.421 6.983 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.031 4.031 3 N -0.175 5.175 4 C -0.470 4.470 5 H 0.079 0.921 6 C -0.200 4.200 7 N -0.526 5.526 8 Si 0.801 3.199 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.187 1.187 12 C 0.232 3.768 13 O -0.520 6.520 14 C -0.158 4.158 15 C -0.159 4.159 16 C -0.034 4.034 17 O -0.327 6.327 18 C -0.027 4.027 19 H 0.076 0.924 20 H 0.056 0.944 21 H 0.103 0.897 22 H 0.105 0.895 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.856 -3.908 7.100 9.999 hybrid contribution 0.397 0.387 -1.268 1.384 sum -5.460 -3.521 5.832 8.730 Atomic orbital electron populations 1.22107 0.95296 1.02485 1.01310 1.21714 0.94110 0.83435 1.03881 1.43863 1.55800 1.13145 1.04707 1.19406 1.41665 0.94732 0.91185 0.92126 1.26017 0.93666 0.96639 1.03651 1.69986 1.32591 1.15931 1.34046 0.85131 0.78110 0.78651 0.77973 1.19807 1.20518 1.18730 1.21333 0.81375 0.87586 0.86550 1.90469 1.52528 1.21111 1.87850 1.21668 1.04189 0.99281 0.90637 1.24039 1.00200 0.96865 0.94795 1.24097 0.98098 1.00802 0.80356 1.89651 1.79322 1.37591 1.26177 1.24221 0.97977 0.88076 0.92451 0.92361 0.94354 0.89696 0.89482 0.91208 0.91702 0.87960 0.87373 0.90160 0.90391 0.88566 0.87381 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 10.15 71.98 0.73 -4.29 16 2 C 0.09 3.78 5.43 86.38 0.47 4.25 16 3 N -0.46 -22.97 2.56 -635.55 -1.63 -24.60 16 4 C -0.34 -19.40 8.98 84.04 0.75 -18.65 16 5 H 0.06 3.73 7.70 -2.91 -0.02 3.70 16 6 C 0.00 0.13 4.92 84.93 0.42 0.55 16 7 N -0.89 -47.32 11.33 21.66 0.25 -47.07 16 8 Si 0.98 42.24 29.61 68.60 2.03 44.27 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 12 C 0.44 21.23 7.59 87.66 0.67 21.89 16 13 O -0.63 -35.88 15.61 -3.06 -0.05 -35.93 16 14 C -0.12 -3.93 4.15 29.85 0.12 -3.81 16 15 C -0.14 -4.44 3.35 -10.09 -0.03 -4.47 16 16 C 0.04 1.31 8.80 72.30 0.64 1.95 16 17 O -0.41 -12.41 12.47 -148.98 -1.86 -14.27 16 18 C 0.05 1.16 8.79 72.30 0.64 1.80 16 19 H 0.06 1.69 6.60 -2.39 -0.02 1.68 16 20 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 21 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 22 H 0.09 4.08 5.34 -2.39 -0.01 4.06 16 23 H 0.07 2.50 6.66 -2.39 -0.02 2.49 16 24 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 25 H 0.10 3.06 7.41 -2.38 -0.02 3.04 16 26 H 0.11 3.00 6.27 -2.39 -0.01 2.98 16 27 H 0.08 3.00 7.74 -2.39 -0.02 2.98 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.10 2.55 7.92 -2.39 -0.02 2.53 16 30 H 0.11 1.96 8.10 -2.39 -0.02 1.94 16 31 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -68.58 259.67 4.26 -64.32 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 1.12 Total: 14.05 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 4.40 Total: -0.77 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -1.38 Total: -71.67 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -1.90 Total: -50.20 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -68.58 4.26 -64.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331901133.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.905 kcal (2) G-P(sol) polarization free energy of solvation -68.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds