Wall clock time and date at job start Sun Mar 29 2020 22:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99930 * 2 1 4 4 H 1.48494 * 109.46835 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46629 * 300.00018 * 3 2 1 6 6 H 1.48500 * 109.46899 * 60.00199 * 3 2 1 7 7 C 1.37875 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99812 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47239 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00186 * 180.02562 * 10 9 7 12 12 O 1.21588 * 119.99907 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00047 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00318 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47688 * 183.91203 * 14 13 11 16 16 N 1.46903 * 115.55840 * 279.51682 * 15 14 13 17 17 C 1.52995 * 117.49794 * 65.19820 * 15 14 13 18 18 C 1.52990 * 117.50262 * 133.82610 * 15 14 13 19 19 H 0.97002 * 120.00040 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47394 * 60.00117 * 9 7 2 21 21 H 1.08999 * 109.47444 * 300.00071 * 9 7 2 22 22 H 0.96998 * 119.99830 * 0.02562 * 10 9 7 23 23 H 0.97008 * 120.00076 * 0.02562 * 13 11 10 24 24 H 1.09000 * 109.47433 * 63.90501 * 14 13 11 25 25 H 1.09005 * 109.47283 * 303.91005 * 14 13 11 26 26 H 1.00903 * 110.99973 * 320.20762 * 16 15 14 27 27 H 1.00904 * 111.00235 * 84.15584 * 16 15 14 28 28 H 1.08994 * 117.50115 * 0.02562 * 17 15 14 29 29 H 1.09003 * 117.50188 * 214.98010 * 17 15 14 30 30 H 1.09005 * 117.49954 * 145.02448 * 18 15 14 31 31 H 1.08997 * 117.51970 * 359.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0015 11 6 1.7538 -4.8833 0.0019 12 8 0.5584 -5.1055 0.0019 13 7 2.6297 -5.9077 0.0011 14 6 2.1414 -7.2889 0.0021 15 6 3.3283 -8.2495 0.0994 16 7 4.0401 -8.5070 -1.1596 17 6 4.1560 -8.2217 1.3858 18 6 3.2246 -9.4015 1.1006 19 1 -0.4850 0.8401 0.0004 20 1 0.6240 -2.5575 -0.8880 21 1 0.6247 -2.5563 0.8919 22 1 3.1567 -3.4354 0.0010 23 1 3.5834 -5.7304 0.0007 24 1 1.5930 -7.4811 -0.9201 25 1 1.4808 -7.4402 0.8559 26 1 3.3935 -8.5923 -1.9296 27 1 4.7255 -7.7891 -1.3409 28 1 3.8547 -7.5194 2.1631 29 1 5.2286 -8.3946 1.2981 30 1 3.6845 -10.3507 0.8253 31 1 2.3111 -9.4753 1.6906 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336869147.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:16 Heat of formation + Delta-G solvation = -14.298071 kcal Electronic energy + Delta-G solvation = -13816.298492 eV Core-core repulsion = 11326.106550 eV Total energy + Delta-G solvation = -2490.191942 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.47697 -38.06942 -34.23687 -33.57901 -32.24012 -31.28135 -27.78656 -25.93871 -22.76896 -22.35210 -20.17121 -19.87356 -18.07016 -16.53618 -15.89601 -15.85970 -15.24421 -14.76113 -14.54978 -14.28866 -13.50274 -13.13707 -12.94082 -12.51337 -11.97114 -11.74427 -11.63038 -10.94316 -10.92081 -10.81781 -10.31948 -10.26344 -9.45797 -9.35992 -8.98780 -8.80555 -8.68945 -7.77073 -6.15808 -4.22436 3.15091 3.23732 3.31009 3.34209 3.76156 3.92852 4.07469 4.32793 4.49628 4.79523 4.91277 5.16148 5.20403 5.44770 5.51493 5.72488 5.75755 5.82795 6.01732 6.80758 6.91187 7.10250 7.14368 7.50580 7.54604 7.56488 7.89788 8.03594 8.76056 8.93069 9.32176 9.47412 10.94528 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063268 B = 0.005279 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.456673 B = 5302.462448 C = 5498.855194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.691 3.309 12 O -0.601 6.601 13 N -0.756 5.756 14 C 0.154 3.846 15 C 0.020 3.980 16 N -0.810 5.810 17 C -0.164 4.164 18 C -0.149 4.149 19 H 0.265 0.735 20 H 0.024 0.976 21 H 0.025 0.975 22 H 0.386 0.614 23 H 0.390 0.610 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.348 0.652 27 H 0.343 0.657 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.405 -14.058 0.439 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.381 5.381 11 C 0.391 3.609 12 O -0.481 6.481 13 N -0.413 5.413 14 C 0.027 3.973 15 C -0.074 4.074 16 N -0.339 5.339 17 C -0.202 4.202 18 C -0.188 4.188 19 H 0.075 0.925 20 H 0.042 0.958 21 H 0.043 0.957 22 H 0.218 0.782 23 H 0.223 0.777 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.161 0.839 27 H 0.157 0.843 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.340 -14.762 0.769 16.973 hybrid contribution 0.868 2.009 -0.367 2.219 sum 9.208 -12.753 0.402 15.736 Atomic orbital electron populations 1.69991 1.06103 1.27165 1.49036 1.24950 0.94909 0.99418 0.94758 0.86356 0.79787 0.82968 0.77747 1.19675 1.20802 1.20789 1.21260 0.93288 0.90425 1.53012 0.91911 1.18990 0.87801 0.81104 0.97608 1.45718 1.10757 1.04411 1.77209 1.16175 0.85197 0.81088 0.78435 1.90876 1.14265 1.84261 1.58662 1.45134 1.08727 1.04924 1.82541 1.21091 0.94206 0.79541 1.02473 1.21571 0.97383 1.00208 0.88252 1.58614 1.19171 1.52508 1.03625 1.23085 0.98083 1.01683 0.97343 1.23111 1.01503 0.93718 1.00428 0.92506 0.95765 0.95740 0.78206 0.77727 0.91851 0.91170 0.83860 0.84295 0.88268 0.88267 0.88029 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.27 7.21 5.43 -5.19 -0.03 7.18 16 10 N -0.73 -15.76 5.55 -66.41 -0.37 -16.13 16 11 C 0.69 14.45 8.57 -86.92 -0.74 13.71 16 12 O -0.60 -15.33 16.34 5.29 0.09 -15.25 16 13 N -0.76 -11.22 5.52 -65.23 -0.36 -11.58 16 14 C 0.15 2.03 5.73 -4.04 -0.02 2.00 16 15 C 0.02 0.20 2.60 -131.61 -0.34 -0.14 16 16 N -0.81 -7.30 9.74 0.74 0.01 -7.29 16 17 C -0.16 -1.52 10.14 -26.73 -0.27 -1.79 16 18 C -0.15 -1.37 10.10 -26.74 -0.27 -1.64 16 19 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 20 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.39 7.11 8.34 -40.82 -0.34 6.77 16 23 H 0.39 4.71 8.49 -40.82 -0.35 4.36 16 24 H 0.06 0.88 8.06 -51.93 -0.42 0.47 16 25 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 26 H 0.35 3.00 8.91 -39.29 -0.35 2.65 16 27 H 0.34 2.78 9.08 -39.29 -0.36 2.43 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 LS Contribution 274.11 15.07 4.13 4.13 Total: -1.00 -32.63 274.11 -7.18 -39.81 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -4.29 Total: 10.13 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -2.10 Total: 5.85 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: 0.01 Total: -60.56 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.09 Total: -15.25 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.63 -7.18 -39.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336869147.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.512 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds