Wall clock time and date at job start Sun Mar 29 2020 22:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99930 * 2 1 4 4 H 1.48494 * 109.46835 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46629 * 300.00018 * 3 2 1 6 6 H 1.48500 * 109.46899 * 60.00199 * 3 2 1 7 7 C 1.37875 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99812 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47239 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00186 * 180.02562 * 10 9 7 12 12 O 1.21588 * 119.99907 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00047 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00318 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47688 * 183.91203 * 14 13 11 16 16 N 1.46903 * 115.55840 * 279.51682 * 15 14 13 17 17 C 1.52995 * 117.49794 * 65.19820 * 15 14 13 18 18 C 1.52990 * 117.50262 * 133.82610 * 15 14 13 19 19 H 0.97002 * 120.00040 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47394 * 60.00117 * 9 7 2 21 21 H 1.08999 * 109.47444 * 300.00071 * 9 7 2 22 22 H 0.96998 * 119.99830 * 0.02562 * 10 9 7 23 23 H 0.97008 * 120.00076 * 0.02562 * 13 11 10 24 24 H 1.09000 * 109.47433 * 63.90501 * 14 13 11 25 25 H 1.09005 * 109.47283 * 303.91005 * 14 13 11 26 26 H 1.00903 * 110.99973 * 320.20762 * 16 15 14 27 27 H 1.00904 * 111.00235 * 84.15584 * 16 15 14 28 28 H 1.08994 * 117.50115 * 0.02562 * 17 15 14 29 29 H 1.09003 * 117.50188 * 214.98010 * 17 15 14 30 30 H 1.09005 * 117.49954 * 145.02448 * 18 15 14 31 31 H 1.08997 * 117.51970 * 359.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0015 11 6 1.7538 -4.8833 0.0019 12 8 0.5584 -5.1055 0.0019 13 7 2.6297 -5.9077 0.0011 14 6 2.1414 -7.2889 0.0021 15 6 3.3283 -8.2495 0.0994 16 7 4.0401 -8.5070 -1.1596 17 6 4.1560 -8.2217 1.3858 18 6 3.2246 -9.4015 1.1006 19 1 -0.4850 0.8401 0.0004 20 1 0.6240 -2.5575 -0.8880 21 1 0.6247 -2.5563 0.8919 22 1 3.1567 -3.4354 0.0010 23 1 3.5834 -5.7304 0.0007 24 1 1.5930 -7.4811 -0.9201 25 1 1.4808 -7.4402 0.8559 26 1 3.3935 -8.5923 -1.9296 27 1 4.7255 -7.7891 -1.3409 28 1 3.8547 -7.5194 2.1631 29 1 5.2286 -8.3946 1.2981 30 1 3.6845 -10.3507 0.8253 31 1 2.3111 -9.4753 1.6906 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336869147.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:16 Heat of formation + Delta-G solvation = -41.806072 kcal Electronic energy + Delta-G solvation = -13817.491329 eV Core-core repulsion = 11326.106550 eV Total energy + Delta-G solvation = -2491.384778 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.01280 -39.14029 -36.18687 -35.08976 -34.24113 -32.02315 -29.62909 -27.43157 -24.55419 -23.36462 -21.84759 -20.85569 -19.72797 -18.12369 -17.54824 -16.95359 -16.61593 -16.26051 -16.17491 -15.38863 -14.93966 -14.74151 -14.45011 -14.04929 -13.64025 -13.40474 -12.87262 -12.75057 -12.33883 -12.22112 -11.65419 -11.45831 -11.36582 -10.98507 -10.82451 -10.33476 -9.77052 -9.61416 -8.28948 -6.45567 1.43708 1.45329 1.58394 1.79059 2.20242 2.38851 2.84391 3.06304 3.32102 3.53701 3.60905 3.95428 4.12294 4.60750 4.70007 4.77667 4.81202 5.04599 5.07169 5.25500 5.30179 5.45332 5.48445 5.65127 5.84098 6.15560 6.23189 6.46838 6.66444 7.23434 7.28254 7.68621 8.83741 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063268 B = 0.005279 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.456673 B = 5302.462448 C = 5498.855194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.284 3.716 10 N -0.722 5.722 11 C 0.689 3.311 12 O -0.651 6.651 13 N -0.727 5.727 14 C 0.153 3.847 15 C 0.019 3.981 16 N -0.805 5.805 17 C -0.156 4.156 18 C -0.144 4.144 19 H 0.269 0.731 20 H -0.015 1.015 21 H -0.015 1.015 22 H 0.405 0.595 23 H 0.409 0.591 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.350 0.650 27 H 0.350 0.650 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.044 -14.157 0.494 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.161 3.839 10 N -0.375 5.375 11 C 0.389 3.611 12 O -0.534 6.534 13 N -0.384 5.384 14 C 0.027 3.973 15 C -0.076 4.076 16 N -0.335 5.335 17 C -0.194 4.194 18 C -0.182 4.182 19 H 0.078 0.922 20 H 0.003 0.997 21 H 0.003 0.997 22 H 0.240 0.760 23 H 0.245 0.755 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.164 0.836 27 H 0.164 0.836 28 H 0.113 0.887 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.070 -14.917 0.819 18.594 hybrid contribution 0.022 1.929 -0.386 1.968 sum 11.092 -12.988 0.433 17.085 Atomic orbital electron populations 1.70151 1.08319 1.28536 1.50011 1.26073 0.95771 1.03904 0.93834 0.85079 0.79045 0.77194 0.77675 1.17614 1.20455 1.20444 1.21625 0.94320 0.90406 1.52838 0.89776 1.18428 0.88141 0.83414 0.93948 1.45291 1.10888 1.03769 1.77584 1.16357 0.85109 0.81673 0.77973 1.90843 1.16840 1.84996 1.60698 1.44863 1.08865 1.04322 1.80374 1.21233 0.95711 0.78848 1.01554 1.21370 0.96730 1.00191 0.89289 1.58653 1.19031 1.52553 1.03280 1.23126 0.98722 1.01392 0.96150 1.23192 1.01696 0.93841 0.99508 0.92223 0.99695 0.99679 0.75994 0.75543 0.92623 0.92467 0.83583 0.83566 0.88719 0.86967 0.87130 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.99 42.25 29.54 68.60 2.03 44.27 16 4 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -30.29 9.28 25.60 0.24 -30.05 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.28 15.91 5.43 85.63 0.46 16.38 16 10 N -0.72 -31.31 5.55 -482.30 -2.68 -33.99 16 11 C 0.69 29.05 8.57 179.06 1.53 30.58 16 12 O -0.65 -34.31 16.34 -3.99 -0.07 -34.37 16 13 N -0.73 -20.84 5.52 -478.54 -2.64 -23.48 16 14 C 0.15 3.91 5.73 86.38 0.50 4.40 16 15 C 0.02 0.34 2.60 3.52 0.01 0.35 16 16 N -0.81 -12.62 9.74 -151.58 -1.48 -14.10 16 17 C -0.16 -2.49 10.14 30.59 0.31 -2.18 16 18 C -0.14 -2.32 10.10 30.59 0.31 -2.01 16 19 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 20 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 21 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 22 H 0.40 14.35 8.34 -92.71 -0.77 13.57 16 23 H 0.41 8.94 8.49 -92.70 -0.79 8.15 16 24 H 0.06 1.53 8.06 -2.39 -0.02 1.52 16 25 H 0.06 1.64 7.94 -2.38 -0.02 1.62 16 26 H 0.35 5.36 8.91 -89.69 -0.80 4.56 16 27 H 0.35 4.72 9.08 -89.69 -0.81 3.90 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.10 1.57 8.08 -2.39 -0.02 1.55 16 Total: -1.00 -72.10 274.11 -2.73 -74.82 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -2.00 Total: 24.92 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 3.82 Total: 18.13 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -6.51 Total: -127.78 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.07 Total: -34.37 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -72.10 -2.73 -74.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336869147.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.018 kcal (2) G-P(sol) polarization free energy of solvation -72.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds