Wall clock time and date at job start Sun Mar 29 2020 22:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00169 * 2 1 4 4 H 1.09000 * 110.81900 * 26.66304 * 3 2 1 5 5 C 1.54893 * 110.75319 * 263.32813 * 3 2 1 6 6 C 1.54266 * 104.19500 * 203.74223 * 5 3 2 7 7 C 1.53872 * 106.60044 * 23.61099 * 6 5 3 8 8 C 1.54266 * 106.59640 * 359.97438 * 7 6 5 9 9 H 1.09001 * 110.48620 * 95.07012 * 8 7 6 10 10 C 1.50704 * 110.48614 * 217.71111 * 8 7 6 11 11 O 1.21291 * 120.00324 * 118.55248 * 10 8 7 12 12 N 1.34780 * 119.99835 * 298.54478 * 10 8 7 13 13 C 1.37095 * 120.00043 * 180.02562 * 12 10 8 14 14 H 1.08001 * 119.99858 * 0.02562 * 13 12 10 15 15 C 1.38949 * 120.00367 * 179.97438 * 13 12 10 16 16 N 1.31408 * 119.99614 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00093 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46861 * 90.00250 * 17 15 13 19 19 H 1.48501 * 109.47217 * 210.00128 * 17 15 13 20 20 H 1.48498 * 109.47228 * 330.00358 * 17 15 13 21 21 H 1.08999 * 109.46663 * 300.00025 * 1 2 3 22 22 H 1.08995 * 109.47109 * 59.99936 * 1 2 3 23 23 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 24 24 H 1.09002 * 110.48578 * 85.06701 * 5 3 2 25 25 H 1.08998 * 110.60430 * 322.47588 * 5 3 2 26 26 H 1.09002 * 110.02957 * 264.32709 * 6 5 3 27 27 H 1.09000 * 110.07144 * 142.92082 * 6 5 3 28 28 H 1.09003 * 110.03622 * 240.71485 * 7 6 5 29 29 H 1.09003 * 110.07498 * 119.30332 * 7 6 5 30 30 H 0.96997 * 120.00027 * 0.02562 * 12 10 8 31 31 H 0.96998 * 119.99981 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3360 2.0297 0.4572 5 6 2.3872 1.7384 -1.4386 6 6 3.4949 2.7932 -1.2382 7 6 4.1257 2.5124 0.1369 8 6 3.3790 1.2971 0.7244 9 1 3.9193 0.3758 0.5070 10 6 3.1908 1.4616 2.2105 11 8 2.0730 1.5085 2.6789 12 7 4.2648 1.5566 3.0193 13 6 4.0937 1.7057 4.3713 14 1 3.0983 1.7467 4.7884 15 6 5.2009 1.8030 5.2052 16 7 6.4120 1.7526 4.6978 17 14 4.9677 2.0070 7.0474 18 1 4.9116 0.6695 7.6903 19 1 6.1060 2.7784 7.6081 20 1 3.7000 2.7351 7.3083 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.5269 2.1795 -1.9420 25 1 2.7671 0.8897 -2.0075 26 1 3.0642 3.7944 -1.2540 27 1 4.2477 2.6985 -2.0208 28 1 4.0013 3.3773 0.7885 29 1 5.1847 2.2808 0.0224 30 1 5.1588 1.5193 2.6448 31 1 7.1849 1.8209 5.2799 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353553461.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:26 Heat of formation + Delta-G solvation = -100.694989 kcal Electronic energy + Delta-G solvation = -14545.580798 eV Core-core repulsion = 12019.349653 eV Total energy + Delta-G solvation = -2526.231145 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.25960 -37.25619 -35.46143 -33.87647 -31.20221 -28.88338 -27.95649 -25.76193 -24.72819 -21.20760 -20.23997 -18.81067 -17.86090 -16.76500 -15.88640 -15.03992 -14.59088 -14.52120 -14.12629 -13.69105 -13.50305 -13.01214 -12.52123 -12.10697 -11.74451 -11.37168 -11.17644 -11.07810 -11.00827 -10.83094 -10.37318 -10.26567 -10.23391 -10.12324 -9.47505 -9.12864 -8.29545 -7.92899 -6.38313 -3.78909 3.19810 3.28031 3.33969 3.92070 4.13641 4.23600 4.78872 4.82451 5.14052 5.29064 5.33537 5.54948 5.64857 5.69504 5.76163 5.80491 5.89691 5.97431 6.06116 6.08726 6.18449 6.36681 6.41494 6.52860 6.65265 7.58208 7.62830 8.09743 8.65062 9.20981 9.59397 10.10782 10.79501 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043411 B = 0.008065 C = 0.007114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.844826 B = 3471.111002 C = 3934.753819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.377 6.377 3 C 0.107 3.893 4 H 0.080 0.920 5 C -0.146 4.146 6 C -0.119 4.119 7 C -0.114 4.114 8 C -0.104 4.104 9 H 0.094 0.906 10 C 0.452 3.548 11 O -0.595 6.595 12 N -0.561 5.561 13 C -0.300 4.300 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.929 3.071 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 H 0.046 0.954 22 H 0.032 0.968 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.393 0.607 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 0.596 -10.580 11.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.296 6.296 3 C 0.049 3.951 4 H 0.098 0.902 5 C -0.184 4.184 6 C -0.157 4.157 7 C -0.153 4.153 8 C -0.126 4.126 9 H 0.112 0.888 10 C 0.238 3.762 11 O -0.481 6.481 12 N -0.196 5.196 13 C -0.430 4.430 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.756 3.244 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.195 1.195 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.226 0.774 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.691 0.482 -10.149 11.191 hybrid contribution 0.379 0.240 0.726 0.854 sum -4.312 0.722 -9.423 10.388 Atomic orbital electron populations 1.22688 0.81670 1.01985 0.99741 1.87837 1.19297 1.27710 1.94738 1.22873 0.94116 0.84956 0.93194 0.90233 1.22834 0.98595 0.99160 0.97784 1.22020 0.97655 0.98706 0.97290 1.22072 0.99522 0.97719 0.95946 1.22066 0.96423 0.99860 0.94222 0.88784 1.19708 0.85453 0.83836 0.87250 1.90488 1.24380 1.56544 1.76643 1.41871 1.07384 1.63290 1.07066 1.19719 0.94805 1.46690 0.81743 0.88009 1.25256 0.94624 0.97431 1.00633 1.69614 0.97742 1.50491 1.36437 0.85872 0.77922 0.78381 0.82188 1.20413 1.20924 1.19466 0.93496 0.94909 0.90341 0.91887 0.90843 0.91805 0.91626 0.90960 0.90903 0.77361 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.85 101.05 1.10 1.62 16 2 O -0.38 -6.92 10.49 -35.23 -0.37 -7.29 16 3 C 0.11 1.89 2.40 -24.75 -0.06 1.83 16 4 H 0.08 1.51 7.21 -51.93 -0.37 1.14 16 5 C -0.15 -1.99 6.55 -25.07 -0.16 -2.15 16 6 C -0.12 -1.54 6.80 -25.61 -0.17 -1.71 16 7 C -0.11 -1.82 6.30 -25.61 -0.16 -1.99 16 8 C -0.10 -1.99 2.98 -90.13 -0.27 -2.26 16 9 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 10 C 0.45 11.15 6.97 -10.98 -0.08 11.08 16 11 O -0.60 -16.67 15.34 5.55 0.09 -16.58 16 12 N -0.56 -14.69 5.23 -10.96 -0.06 -14.74 16 13 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 14 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 17 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 22 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.25 7.83 -51.93 -0.41 0.85 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.39 9.87 7.88 -40.82 -0.32 9.54 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 264.64 15.07 3.99 3.99 Total: -1.00 -31.53 264.64 -5.12 -36.65 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -4.42 Total: 7.61 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.05 Total: -1.78 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.67 Total: -38.94 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.28 Total: -23.87 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.53 -5.12 -36.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353553461.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.046 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds