Wall clock time and date at job start Sun Mar 29 2020 22:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00055 * 2 1 4 4 H 1.09007 * 110.01595 * 28.61616 * 3 2 1 5 5 C 1.54265 * 110.07873 * 267.19850 * 3 2 1 6 6 C 1.54886 * 104.19798 * 217.08379 * 5 3 2 7 7 C 1.54895 * 102.74939 * 37.93645 * 6 5 3 8 8 C 1.53878 * 110.03523 * 150.00200 * 3 2 1 9 9 H 1.08996 * 110.03025 * 238.66938 * 8 3 2 10 10 C 1.50696 * 110.02815 * 0.05224 * 8 3 2 11 11 O 1.21294 * 120.00092 * 85.81021 * 10 8 3 12 12 N 1.34776 * 120.00077 * 265.81185 * 10 8 3 13 13 C 1.37105 * 120.00290 * 180.02562 * 12 10 8 14 14 H 1.07999 * 119.99988 * 0.02562 * 13 12 10 15 15 C 1.38943 * 120.00101 * 179.97438 * 13 12 10 16 16 N 1.31414 * 120.00350 * 359.72686 * 15 13 12 17 17 Si 1.86800 * 120.00159 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47602 * 179.72359 * 17 15 13 19 19 H 1.48502 * 109.47210 * 299.72995 * 17 15 13 20 20 H 1.48511 * 109.47021 * 59.72540 * 17 15 13 21 21 H 1.08993 * 109.47443 * 59.99802 * 1 2 3 22 22 H 1.09006 * 109.46871 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46686 * 299.99257 * 1 2 3 24 24 H 1.09007 * 110.48078 * 335.75606 * 5 3 2 25 25 H 1.08994 * 110.49277 * 98.26651 * 5 3 2 26 26 H 1.09001 * 110.75725 * 156.25279 * 6 5 3 27 27 H 1.08998 * 110.75385 * 279.43670 * 6 5 3 28 28 H 1.08994 * 110.48374 * 203.37951 * 7 6 5 29 29 H 1.09000 * 110.48517 * 80.73776 * 7 6 5 30 30 H 0.97002 * 120.00096 * 0.02562 * 12 10 8 31 31 H 0.97000 * 119.99453 * 0.26908 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 0.4905 5 6 2.2903 1.7604 -1.4472 6 6 3.6247 2.5406 -1.3485 7 6 4.4265 1.7167 -0.3104 8 6 3.3684 1.2778 0.7228 9 1 3.3576 1.9702 1.5645 10 6 3.6673 -0.1178 1.2066 11 8 4.1996 -0.9160 0.4645 12 7 3.3430 -0.4790 2.4639 13 6 3.6154 -1.7485 2.9043 14 1 4.0901 -2.4590 2.2438 15 6 3.2816 -2.1207 4.2007 16 7 2.7097 -1.2544 5.0065 17 14 3.6520 -3.8506 4.8005 18 1 3.2076 -3.9915 6.2104 19 1 2.9300 -4.8335 3.9532 20 1 5.1132 -4.1020 4.7146 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 2.4008 0.8973 -2.1037 25 1 1.4915 2.4104 -1.8042 26 1 4.1369 2.5531 -2.3106 27 1 3.4530 3.5558 -0.9908 28 1 5.1876 2.3368 0.1629 29 1 4.8818 0.8467 -0.7834 30 1 2.9170 0.1592 3.0573 31 1 2.5171 -0.3562 4.6949 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353553475.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:29 Heat of formation + Delta-G solvation = -94.625693 kcal Electronic energy + Delta-G solvation = -14812.703092 eV Core-core repulsion = 12286.735132 eV Total energy + Delta-G solvation = -2525.967960 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.40332 -37.25973 -35.45162 -34.03892 -30.95115 -28.87114 -27.97047 -25.81463 -24.39603 -21.24591 -20.58698 -18.87320 -17.73578 -17.01927 -15.93790 -15.13755 -14.82243 -14.42023 -14.14301 -13.69628 -13.47527 -12.95000 -12.82531 -12.13486 -11.23490 -11.19396 -11.09358 -11.03596 -10.86851 -10.83198 -10.38410 -10.35901 -10.13786 -9.73049 -9.39886 -9.20949 -8.24639 -7.87866 -6.62565 -3.73359 3.38809 3.40791 3.61469 3.94282 4.13388 4.36717 4.78072 4.80723 4.99166 5.26204 5.34594 5.43993 5.55847 5.59013 5.73236 5.80312 5.82929 5.89160 5.97367 6.03196 6.10057 6.24905 6.37104 6.41241 6.71984 7.59435 7.95081 8.21856 8.76098 8.97210 9.64559 10.07627 10.81367 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042128 B = 0.008938 C = 0.008203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.477726 B = 3131.955474 C = 3412.569504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.098 3.902 4 H 0.061 0.939 5 C -0.143 4.143 6 C -0.120 4.120 7 C -0.109 4.109 8 C -0.109 4.109 9 H 0.081 0.919 10 C 0.475 3.525 11 O -0.583 6.583 12 N -0.575 5.575 13 C -0.373 4.373 14 H 0.096 0.904 15 C -0.013 4.013 16 N -0.907 5.907 17 Si 1.090 2.910 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.285 1.285 21 H 0.034 0.966 22 H 0.083 0.917 23 H 0.037 0.963 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.373 0.627 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 8.010 -8.125 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.039 3.961 4 H 0.079 0.921 5 C -0.181 4.181 6 C -0.158 4.158 7 C -0.147 4.147 8 C -0.131 4.131 9 H 0.099 0.901 10 C 0.261 3.739 11 O -0.467 6.467 12 N -0.212 5.212 13 C -0.503 4.503 14 H 0.114 0.886 15 C -0.215 4.215 16 N -0.547 5.547 17 Si 0.917 3.083 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.211 1.211 21 H 0.052 0.948 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.205 0.795 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.755 6.238 -7.280 9.975 hybrid contribution -0.497 1.735 -0.948 2.038 sum -3.252 7.973 -8.228 11.910 Atomic orbital electron populations 1.22733 0.82148 1.02578 0.99001 1.88211 1.18533 1.26400 1.94663 1.22665 0.93537 0.85004 0.94928 0.92081 1.22867 0.97470 1.00344 0.97426 1.22398 0.95732 0.98222 0.99411 1.22294 0.96545 1.00321 0.95492 1.21955 0.95016 0.97548 0.98587 0.90075 1.19225 0.83621 0.88413 0.82603 1.90468 1.47697 1.53234 1.55295 1.41893 1.54519 1.13323 1.11421 1.20508 1.40351 0.89501 0.99944 0.88577 1.26429 0.95939 1.06933 0.92184 1.70894 1.40668 1.05781 1.37388 0.83150 0.76504 0.72556 0.76121 1.20528 1.21151 1.21137 0.94763 0.89888 0.94409 0.90270 0.91944 0.91405 0.91746 0.91747 0.89287 0.79459 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.59 16 2 O -0.36 -7.22 8.82 -35.24 -0.31 -7.54 16 3 C 0.10 1.65 3.35 -25.61 -0.09 1.56 16 4 H 0.06 0.89 7.80 -51.93 -0.41 0.48 16 5 C -0.14 -2.03 6.56 -25.07 -0.16 -2.20 16 6 C -0.12 -1.56 6.91 -24.74 -0.17 -1.73 16 7 C -0.11 -1.80 6.31 -25.07 -0.16 -1.95 16 8 C -0.11 -2.06 3.29 -90.66 -0.30 -2.35 16 9 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 10 C 0.48 11.96 5.52 -10.99 -0.06 11.90 16 11 O -0.58 -16.87 15.31 5.54 0.08 -16.78 16 12 N -0.58 -15.35 5.28 -10.96 -0.06 -15.41 16 13 C -0.37 -11.00 9.68 -14.93 -0.14 -11.14 16 14 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 15 C -0.01 -0.38 5.50 -17.47 -0.10 -0.48 16 16 N -0.91 -26.34 13.68 55.50 0.76 -25.58 16 17 Si 1.09 25.26 29.92 -169.99 -5.09 20.17 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.04 0.54 8.10 -51.93 -0.42 0.12 16 24 H 0.08 1.24 8.08 -51.92 -0.42 0.82 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.72 6.89 -51.93 -0.36 1.36 16 30 H 0.37 9.30 6.73 -40.82 -0.27 9.03 16 31 H 0.26 7.28 6.77 -40.82 -0.28 7.01 16 LS Contribution 260.84 15.07 3.93 3.93 Total: -1.00 -34.19 260.84 -5.05 -39.24 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.28 Total: 6.77 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.08 Total: -4.80 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.70 Total: -40.99 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.23 Total: -24.32 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.09 Total: 20.17 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.19 -5.05 -39.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353553475.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.388 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds