Wall clock time and date at job start Sun Mar 29 2020 22:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00055 * 2 1 4 4 H 1.09007 * 110.01595 * 28.61616 * 3 2 1 5 5 C 1.54265 * 110.07873 * 267.19850 * 3 2 1 6 6 C 1.54886 * 104.19798 * 217.08379 * 5 3 2 7 7 C 1.54895 * 102.74939 * 37.93645 * 6 5 3 8 8 C 1.53878 * 110.03523 * 150.00200 * 3 2 1 9 9 H 1.08996 * 110.03025 * 238.66938 * 8 3 2 10 10 C 1.50696 * 110.02815 * 0.05224 * 8 3 2 11 11 O 1.21294 * 120.00092 * 85.81021 * 10 8 3 12 12 N 1.34776 * 120.00077 * 265.81185 * 10 8 3 13 13 C 1.37105 * 120.00290 * 180.02562 * 12 10 8 14 14 H 1.07999 * 119.99988 * 0.02562 * 13 12 10 15 15 C 1.38943 * 120.00101 * 179.97438 * 13 12 10 16 16 N 1.31414 * 120.00350 * 359.72686 * 15 13 12 17 17 Si 1.86800 * 120.00159 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47602 * 179.72359 * 17 15 13 19 19 H 1.48502 * 109.47210 * 299.72995 * 17 15 13 20 20 H 1.48511 * 109.47021 * 59.72540 * 17 15 13 21 21 H 1.08993 * 109.47443 * 59.99802 * 1 2 3 22 22 H 1.09006 * 109.46871 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46686 * 299.99257 * 1 2 3 24 24 H 1.09007 * 110.48078 * 335.75606 * 5 3 2 25 25 H 1.08994 * 110.49277 * 98.26651 * 5 3 2 26 26 H 1.09001 * 110.75725 * 156.25279 * 6 5 3 27 27 H 1.08998 * 110.75385 * 279.43670 * 6 5 3 28 28 H 1.08994 * 110.48374 * 203.37951 * 7 6 5 29 29 H 1.09000 * 110.48517 * 80.73776 * 7 6 5 30 30 H 0.97002 * 120.00096 * 0.02562 * 12 10 8 31 31 H 0.97000 * 119.99453 * 0.26908 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3406 2.0120 0.4905 5 6 2.2903 1.7604 -1.4472 6 6 3.6247 2.5406 -1.3485 7 6 4.4265 1.7167 -0.3104 8 6 3.3684 1.2778 0.7228 9 1 3.3576 1.9702 1.5645 10 6 3.6673 -0.1178 1.2066 11 8 4.1996 -0.9160 0.4645 12 7 3.3430 -0.4790 2.4639 13 6 3.6154 -1.7485 2.9043 14 1 4.0901 -2.4590 2.2438 15 6 3.2816 -2.1207 4.2007 16 7 2.7097 -1.2544 5.0065 17 14 3.6520 -3.8506 4.8005 18 1 3.2076 -3.9915 6.2104 19 1 2.9300 -4.8335 3.9532 20 1 5.1132 -4.1020 4.7146 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 2.4008 0.8973 -2.1037 25 1 1.4915 2.4104 -1.8042 26 1 4.1369 2.5531 -2.3106 27 1 3.4530 3.5558 -0.9908 28 1 5.1876 2.3368 0.1629 29 1 4.8818 0.8467 -0.7834 30 1 2.9170 0.1592 3.0573 31 1 2.5171 -0.3562 4.6949 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353553475.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:28 Heat of formation + Delta-G solvation = -119.599793 kcal Electronic energy + Delta-G solvation = -14813.786051 eV Core-core repulsion = 12286.735132 eV Total energy + Delta-G solvation = -2527.050918 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.01074 -39.00022 -36.87672 -36.12547 -33.08669 -30.30866 -29.19279 -27.13439 -26.44623 -22.96508 -21.72631 -20.60678 -19.88542 -18.61706 -17.39774 -16.82321 -16.39787 -16.11114 -15.52233 -15.44114 -14.95252 -14.68508 -14.47019 -13.38051 -13.34187 -12.85963 -12.48437 -12.42029 -12.30093 -11.97412 -11.92347 -11.87969 -11.70782 -11.54753 -11.43036 -10.50174 -10.30111 -10.05754 -8.90533 -6.02036 1.52175 1.53252 1.81237 2.07171 2.43351 2.81928 3.15918 3.17833 3.55783 3.69103 3.99834 4.23132 4.36277 4.38103 4.40371 4.50086 4.54320 4.60861 4.75133 4.80776 4.98243 5.03707 5.14866 5.20922 5.46159 5.65533 5.98478 6.35578 6.62552 6.81558 7.50705 8.01733 8.57463 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042128 B = 0.008938 C = 0.008203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.477726 B = 3131.955474 C = 3412.569504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.091 3.909 4 H 0.092 0.908 5 C -0.138 4.138 6 C -0.106 4.106 7 C -0.111 4.111 8 C -0.111 4.111 9 H 0.105 0.895 10 C 0.474 3.526 11 O -0.629 6.629 12 N -0.586 5.586 13 C -0.404 4.404 14 H 0.067 0.933 15 C -0.045 4.045 16 N -0.919 5.919 17 Si 1.133 2.867 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.273 1.273 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.380 0.620 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.847 9.711 -8.455 13.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.033 3.967 4 H 0.109 0.891 5 C -0.176 4.176 6 C -0.144 4.144 7 C -0.150 4.150 8 C -0.132 4.132 9 H 0.123 0.877 10 C 0.263 3.737 11 O -0.515 6.515 12 N -0.224 5.224 13 C -0.534 4.534 14 H 0.085 0.915 15 C -0.243 4.243 16 N -0.559 5.559 17 Si 0.952 3.048 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.198 1.198 21 H 0.084 0.916 22 H 0.094 0.906 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.214 0.786 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.505 7.982 -7.619 11.578 hybrid contribution -0.271 1.235 -0.887 1.545 sum -3.776 9.217 -8.506 13.099 Atomic orbital electron populations 1.22888 0.80162 1.02863 1.00898 1.88145 1.21017 1.28637 1.95066 1.22948 0.92472 0.84604 0.96718 0.89052 1.22857 0.99415 1.00229 0.95114 1.22401 0.94164 0.98804 0.98986 1.22320 0.96830 0.99835 0.95966 1.22141 0.97515 0.93355 1.00222 0.87705 1.20384 0.81334 0.90595 0.81422 1.90432 1.49261 1.55544 1.56306 1.41964 1.55265 1.12772 1.12350 1.20476 1.41866 0.90659 1.00355 0.91486 1.27797 0.94735 1.09905 0.91827 1.70970 1.41270 1.06036 1.37614 0.82655 0.77201 0.68692 0.76215 1.19433 1.20086 1.19820 0.91648 0.90613 0.93545 0.92640 0.88336 0.89849 0.88449 0.89909 0.93069 0.78623 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.85 113.37 1.23 2.05 16 2 O -0.41 -16.27 8.82 -148.98 -1.31 -17.58 16 3 C 0.09 2.87 3.35 31.32 0.11 2.97 16 4 H 0.09 2.31 7.80 -2.38 -0.02 2.29 16 5 C -0.14 -3.50 6.56 31.67 0.21 -3.30 16 6 C -0.11 -2.36 6.91 31.89 0.22 -2.14 16 7 C -0.11 -3.53 6.31 31.67 0.20 -3.33 16 8 C -0.11 -4.05 3.29 -10.82 -0.04 -4.08 16 9 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 10 C 0.47 24.39 5.52 87.66 0.48 24.87 16 11 O -0.63 -37.95 15.31 -3.07 -0.05 -38.00 16 12 N -0.59 -32.04 5.28 -306.99 -1.62 -33.66 16 13 C -0.40 -24.51 9.68 84.04 0.81 -23.70 16 14 H 0.07 4.39 7.16 -2.91 -0.02 4.36 16 15 C -0.05 -2.58 5.50 84.92 0.47 -2.11 16 16 N -0.92 -53.33 13.68 21.66 0.30 -53.03 16 17 Si 1.13 50.79 29.92 68.60 2.05 52.85 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 21 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 23 H 0.05 1.25 8.10 -2.38 -0.02 1.23 16 24 H 0.05 1.67 8.08 -2.38 -0.02 1.65 16 25 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.05 2.01 6.89 -2.39 -0.02 1.99 16 30 H 0.38 19.26 6.73 -92.71 -0.62 18.63 16 31 H 0.26 14.49 6.77 -92.71 -0.63 13.86 16 Total: -1.00 -76.59 260.84 3.70 -72.89 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.64 Total: 25.29 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 3.69 Total: -8.76 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -1.33 Total: -86.69 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -1.36 Total: -55.58 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.05 Total: 52.85 kcal Total: -76.59 3.70 -72.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353553475.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.707 kcal (2) G-P(sol) polarization free energy of solvation -76.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds