Wall clock time and date at job start Sun Mar 29 2020 22:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00161 * 2 1 4 4 H 1.09001 * 110.54126 * 332.61760 * 3 2 1 5 5 C 1.54966 * 110.52784 * 95.24265 * 3 2 1 6 6 C 1.54890 * 102.77717 * 156.57015 * 5 3 2 7 7 C 1.54265 * 104.19565 * 322.08330 * 6 5 3 8 8 C 1.53870 * 106.59612 * 23.61148 * 7 6 5 9 9 H 1.09000 * 110.03075 * 240.66183 * 8 7 6 10 10 C 1.50702 * 110.03365 * 119.28497 * 8 7 6 11 11 O 1.21293 * 120.00255 * 242.09209 * 10 8 7 12 12 N 1.34783 * 120.00004 * 62.09099 * 10 8 7 13 13 C 1.37092 * 119.99804 * 180.02562 * 12 10 8 14 14 H 1.08002 * 120.00499 * 0.02562 * 13 12 10 15 15 C 1.38956 * 119.99671 * 179.72159 * 13 12 10 16 16 N 1.31414 * 120.00152 * 0.27554 * 15 13 12 17 17 Si 1.86803 * 119.99914 * 180.27723 * 15 13 12 18 18 H 1.48496 * 109.47187 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47141 * 119.99961 * 17 15 13 20 20 H 1.48498 * 109.47018 * 240.00007 * 17 15 13 21 21 H 1.08998 * 109.47094 * 299.99840 * 1 2 3 22 22 H 1.09001 * 109.46816 * 59.99969 * 1 2 3 23 23 H 1.09001 * 109.46865 * 179.97438 * 1 2 3 24 24 H 1.09001 * 110.71976 * 38.25672 * 5 3 2 25 25 H 1.09009 * 110.92475 * 274.97667 * 5 3 2 26 26 H 1.09000 * 110.48573 * 203.40312 * 6 5 3 27 27 H 1.09001 * 110.60187 * 80.81770 * 6 5 3 28 28 H 1.09000 * 110.03347 * 264.32715 * 7 6 5 29 29 H 1.09006 * 110.07142 * 142.91882 * 7 6 5 30 30 H 0.97000 * 119.99715 * 359.97438 * 12 10 8 31 31 H 0.96991 * 119.99827 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3379 2.0234 -0.4695 5 6 2.3525 1.7479 1.4452 6 6 3.4619 2.8062 1.2258 7 6 4.2960 2.2431 0.0566 8 6 3.3731 1.2897 -0.7225 9 1 3.7873 0.2815 -0.7166 10 6 3.2111 1.7724 -2.1408 11 8 2.1148 2.0889 -2.5523 12 7 4.2843 1.8524 -2.9523 13 6 4.1369 2.2921 -4.2424 14 1 3.1609 2.5747 -4.6085 15 6 5.2443 2.3800 -5.0772 16 7 6.4320 2.0367 -4.6316 17 14 5.0447 2.9864 -6.8327 18 1 3.6171 3.3065 -7.0866 19 1 5.8689 4.2055 -7.0320 20 1 5.4895 1.9287 -7.7753 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 2.7304 0.9069 2.0267 25 1 1.4846 2.1932 1.9318 26 1 4.0769 2.9052 2.1202 27 1 3.0263 3.7680 0.9551 28 1 5.1575 1.6974 0.4414 29 1 4.6274 3.0546 -0.5914 30 1 5.1611 1.5997 -2.6231 31 1 7.2048 2.0978 -5.2144 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353553478.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:34 Heat of formation + Delta-G solvation = -100.806255 kcal Electronic energy + Delta-G solvation = -14550.779102 eV Core-core repulsion = 12024.543132 eV Total energy + Delta-G solvation = -2526.235969 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.32423 -37.28922 -35.41159 -33.90868 -31.23521 -28.88022 -27.92586 -25.79011 -24.73157 -21.09950 -20.46279 -18.71213 -17.88977 -16.78663 -15.81030 -15.09435 -14.73861 -14.43159 -14.17297 -13.68805 -13.51629 -12.97940 -12.57501 -12.14274 -11.73421 -11.35167 -11.16686 -11.06508 -10.92005 -10.79419 -10.39889 -10.31911 -10.22815 -10.11235 -9.50600 -9.17641 -8.32156 -7.95140 -6.40061 -3.80864 3.17171 3.27546 3.34859 3.90127 4.08959 4.22861 4.80076 4.84897 5.14077 5.31972 5.33003 5.54249 5.63487 5.73875 5.77666 5.82251 5.91707 5.93577 6.05826 6.12323 6.21255 6.39136 6.44982 6.53967 6.61961 7.56825 7.60423 8.07943 8.62555 9.18887 9.57039 10.07878 10.77705 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043983 B = 0.007971 C = 0.007186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.451664 B = 3512.046754 C = 3895.755559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.383 6.383 3 C 0.100 3.900 4 H 0.088 0.912 5 C -0.144 4.144 6 C -0.120 4.120 7 C -0.114 4.114 8 C -0.105 4.105 9 H 0.094 0.906 10 C 0.450 3.550 11 O -0.597 6.597 12 N -0.560 5.560 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.901 5.901 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.034 0.966 22 H 0.045 0.955 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.394 0.606 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 -0.846 10.314 11.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.042 3.958 4 H 0.105 0.895 5 C -0.182 4.182 6 C -0.158 4.158 7 C -0.152 4.152 8 C -0.127 4.127 9 H 0.112 0.888 10 C 0.236 3.764 11 O -0.483 6.483 12 N -0.195 5.195 13 C -0.430 4.430 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.542 5.542 17 Si 0.756 3.244 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.227 0.773 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.710 -0.798 9.912 11.003 hybrid contribution 0.392 0.283 -0.733 0.878 sum -4.318 -0.515 9.180 10.158 Atomic orbital electron populations 1.22702 0.81665 1.01954 0.99893 1.87835 1.19315 1.28139 1.94849 1.22901 0.94479 0.84868 0.93583 0.89462 1.22976 0.98694 0.99024 0.97537 1.22242 0.96969 0.98410 0.98137 1.22106 0.97488 0.98914 0.96716 1.21800 0.95767 1.00913 0.94207 0.88787 1.19749 0.85275 0.84459 0.86926 1.90476 1.25972 1.55297 1.76565 1.41862 1.08723 1.57471 1.11420 1.19776 0.96093 1.40121 0.86999 0.87919 1.25269 0.94676 0.97604 1.00393 1.69623 0.98958 1.48282 1.37321 0.85809 0.78608 0.78225 0.81759 1.19253 1.20740 1.20731 0.94725 0.93592 0.90308 0.90818 0.91806 0.91515 0.91474 0.91180 0.90685 0.77300 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 101.05 1.10 1.59 16 2 O -0.38 -6.85 10.42 -35.23 -0.37 -7.21 16 3 C 0.10 1.77 2.67 -25.03 -0.07 1.71 16 4 H 0.09 1.72 6.57 -51.93 -0.34 1.38 16 5 C -0.14 -2.01 6.62 -24.70 -0.16 -2.18 16 6 C -0.12 -1.63 6.83 -25.07 -0.17 -1.81 16 7 C -0.11 -1.84 6.38 -25.62 -0.16 -2.01 16 8 C -0.11 -2.02 3.05 -90.66 -0.28 -2.30 16 9 H 0.09 1.77 8.07 -51.93 -0.42 1.35 16 10 C 0.45 11.07 6.87 -10.98 -0.08 11.00 16 11 O -0.60 -16.63 14.99 5.55 0.08 -16.55 16 12 N -0.56 -14.61 5.15 -10.96 -0.06 -14.67 16 13 C -0.30 -8.54 9.68 -14.93 -0.14 -8.68 16 14 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 15 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 16 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 17 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.33 7.61 -51.93 -0.39 0.94 16 30 H 0.39 9.86 7.88 -40.82 -0.32 9.54 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 263.63 15.07 3.97 3.97 Total: -1.00 -31.27 263.63 -5.10 -36.37 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.37 Total: 8.10 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.06 Total: -2.17 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.67 Total: -38.77 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.28 Total: -23.76 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.27 -5.10 -36.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353553478.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.437 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds