Wall clock time and date at job start Sun Mar 29 2020 21:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47294 * 2 1 4 4 C 1.50697 * 109.47039 * 239.99632 * 2 1 3 5 5 O 1.20831 * 120.00344 * 267.82531 * 4 2 1 6 6 O 1.34234 * 120.00111 * 87.83220 * 4 2 1 7 7 N 1.46505 * 109.46843 * 119.99894 * 2 1 3 8 8 C 1.36928 * 120.00016 * 54.44342 * 7 2 1 9 9 H 1.08003 * 119.99818 * 296.69183 * 8 7 2 10 10 C 1.38814 * 120.00368 * 116.97246 * 8 7 2 11 11 N 1.31611 * 119.99713 * 338.09436 * 10 8 7 12 12 Si 1.86795 * 120.00184 * 158.09131 * 10 8 7 13 13 H 1.48503 * 109.47231 * 60.00219 * 12 10 8 14 14 H 1.48501 * 109.47218 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47517 * 300.00279 * 12 10 8 16 16 C 1.46502 * 119.99823 * 234.44119 * 7 2 1 17 17 C 1.53773 * 113.61402 * 215.41701 * 16 7 2 18 18 C 1.53785 * 87.08118 * 220.01796 * 17 16 7 19 19 C 1.53777 * 113.61399 * 117.91241 * 16 7 2 20 20 H 1.09000 * 109.47407 * 304.05933 * 1 2 3 21 21 H 1.09000 * 109.47106 * 64.05979 * 1 2 3 22 22 H 1.09005 * 109.46873 * 184.06021 * 1 2 3 23 23 H 0.96696 * 117.00307 * 179.97438 * 6 4 2 24 24 H 0.97001 * 120.00429 * 179.97438 * 11 10 8 25 25 H 1.09000 * 112.84764 * 346.71925 * 16 7 2 26 26 H 1.09000 * 113.61600 * 334.56080 * 17 16 7 27 27 H 1.08997 * 113.61897 * 105.47161 * 17 16 7 28 28 H 1.08999 * 113.60928 * 270.88359 * 18 17 16 29 29 H 1.08999 * 113.61707 * 139.98042 * 18 17 16 30 30 H 1.09001 * 113.61807 * 254.52985 * 19 16 7 31 31 H 1.08997 * 113.61620 * 25.35517 * 19 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.2711 -1.8942 -1.1894 6 8 2.2146 -0.0283 -2.3720 7 7 2.0183 -0.6906 1.1962 8 6 1.5963 -1.9638 1.4720 9 1 0.5525 -2.1551 1.6726 10 6 2.5110 -3.0076 1.4993 11 7 3.6580 -2.8942 0.8638 12 14 2.1141 -4.5729 2.4382 13 1 0.8844 -5.1882 1.8773 14 1 3.2457 -5.5262 2.3121 15 1 1.8963 -4.2491 3.8710 16 6 2.9581 -0.0191 2.0974 17 6 3.9961 -0.9661 2.7220 18 6 3.8106 -0.1795 4.0303 19 6 2.4078 0.1880 3.5183 20 1 -0.3634 0.5755 0.8514 21 1 -0.3633 0.4495 -0.9241 22 1 -0.3633 -1.0251 0.0728 23 1 2.5386 -0.5269 -3.1345 24 1 4.2974 -3.6234 0.8832 25 1 3.3924 0.8809 1.6619 26 1 3.6611 -2.0015 2.7839 27 1 4.9923 -0.8675 2.2909 28 1 4.4793 0.6762 4.1238 29 1 3.7996 -0.8087 4.9203 30 1 2.1218 1.2183 3.7300 31 1 1.6376 -0.5310 3.7974 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589479737.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:52 Heat of formation + Delta-G solvation = -57.340306 kcal Electronic energy + Delta-G solvation = -15374.373958 eV Core-core repulsion = 12850.022814 eV Total energy + Delta-G solvation = -2524.351144 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.76040 -39.50061 -36.64859 -35.64094 -33.93458 -30.55885 -26.91463 -25.97609 -25.52210 -23.95155 -21.25610 -20.15972 -18.56680 -18.21279 -17.20819 -16.49934 -16.34071 -16.01718 -15.63716 -15.02671 -14.02487 -13.81614 -13.69717 -13.28724 -12.96069 -12.86686 -12.77287 -12.51789 -12.41804 -12.10810 -11.94463 -11.76340 -11.43621 -10.99037 -10.87781 -10.70727 -9.84366 -8.21935 -7.61822 -5.62353 1.42669 1.45465 1.49836 1.91579 2.50276 2.62412 3.33533 3.64201 4.18954 4.26515 4.36208 4.44306 4.55155 4.72785 4.82629 4.90568 4.99991 5.06627 5.26298 5.27895 5.35452 5.48886 5.58432 5.76813 5.85697 6.05193 6.10634 6.68731 7.35920 7.61159 7.81536 8.52599 9.17666 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024256 B = 0.016605 C = 0.012412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.067058 B = 1685.834392 C = 2255.337353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.170 3.830 3 H 0.094 0.906 4 C 0.428 3.572 5 O -0.495 6.495 6 O -0.537 6.537 7 N -0.557 5.557 8 C -0.285 4.285 9 H 0.038 0.962 10 C 0.031 3.969 11 N -0.859 5.859 12 Si 0.920 3.080 13 H -0.282 1.282 14 H -0.296 1.296 15 H -0.268 1.268 16 C 0.154 3.846 17 C -0.140 4.140 18 C -0.140 4.140 19 C -0.134 4.134 20 H 0.076 0.924 21 H 0.070 0.930 22 H 0.038 0.962 23 H 0.401 0.599 24 H 0.242 0.758 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.023 0.977 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 7.665 0.755 8.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.061 3.939 3 H 0.112 0.888 4 C 0.266 3.734 5 O -0.378 6.378 6 O -0.350 6.350 7 N -0.277 5.277 8 C -0.416 4.416 9 H 0.055 0.945 10 C -0.173 4.173 11 N -0.495 5.495 12 Si 0.748 3.252 13 H -0.208 1.208 14 H -0.222 1.222 15 H -0.193 1.193 16 C 0.048 3.952 17 C -0.179 4.179 18 C -0.178 4.178 19 C -0.174 4.174 20 H 0.095 0.905 21 H 0.089 0.911 22 H 0.058 0.942 23 H 0.260 0.740 24 H 0.051 0.949 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.042 0.958 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.271 7.427 1.053 7.837 hybrid contribution 0.505 -1.782 -0.434 1.902 sum -1.767 5.645 0.619 5.947 Atomic orbital electron populations 1.21841 0.93082 1.01654 1.02340 1.20554 0.95749 0.95157 0.82421 0.88798 1.25927 0.75086 0.87476 0.84881 1.90794 1.45359 1.18272 1.83380 1.84611 1.80238 1.47826 1.22347 1.43886 1.51469 1.13520 1.18864 1.18263 0.92260 0.84155 1.46889 0.94451 1.25988 0.96807 0.98876 0.95607 1.70360 1.09518 1.31858 1.37808 0.86184 0.77091 0.81520 0.80439 1.20755 1.22206 1.19322 1.22029 0.90393 0.93695 0.89124 1.23526 0.97417 1.01421 0.95544 1.22790 0.97984 1.00076 0.96996 1.23226 0.96225 1.00459 0.97488 0.90542 0.91095 0.94249 0.74007 0.94861 0.90645 0.89892 0.95833 0.89485 0.92409 0.90933 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.12 71.98 0.66 -3.95 16 2 C 0.17 7.01 3.28 44.24 0.15 7.16 16 3 H 0.09 3.38 7.75 -2.39 -0.02 3.36 16 4 C 0.43 19.25 7.51 71.24 0.54 19.78 16 5 O -0.49 -27.17 14.15 21.95 0.31 -26.86 16 6 O -0.54 -19.14 13.42 -51.45 -0.69 -19.83 16 7 N -0.56 -26.26 2.34 -655.50 -1.53 -27.79 16 8 C -0.29 -15.14 6.19 84.04 0.52 -14.62 16 9 H 0.04 2.07 7.37 -2.91 -0.02 2.05 16 10 C 0.03 1.72 2.65 84.86 0.22 1.94 16 11 N -0.86 -49.87 10.10 21.65 0.22 -49.65 16 12 Si 0.92 44.31 29.38 68.60 2.02 46.33 16 13 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 14 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 16 C 0.15 6.53 4.38 45.51 0.20 6.73 16 17 C -0.14 -6.31 6.06 31.12 0.19 -6.12 16 18 C -0.14 -4.96 8.08 31.12 0.25 -4.70 16 19 C -0.13 -4.91 7.70 31.12 0.24 -4.67 16 20 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 21 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 22 H 0.04 1.59 7.07 -2.38 -0.02 1.57 16 23 H 0.40 11.27 9.10 -74.06 -0.67 10.59 16 24 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 25 H 0.08 2.94 7.86 -2.39 -0.02 2.92 16 26 H 0.08 4.30 4.16 -2.39 -0.01 4.29 16 27 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.06 2.60 7.73 -2.39 -0.02 2.59 16 Total: -1.00 -65.33 253.89 3.74 -61.59 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.46 Total: 14.65 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 2.96 Total: 1.56 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -1.31 Total: -77.44 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -0.38 Total: -46.69 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.02 Total: 46.33 kcal Total: -65.33 3.74 -61.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589479737.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.247 kcal (2) G-P(sol) polarization free energy of solvation -65.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds