Wall clock time and date at job start Sun Mar 29 2020 21:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.58571 * 2 1 4 4 C 1.53189 * 109.58803 * 239.57005 * 2 1 3 5 5 C 1.53045 * 109.31139 * 185.57325 * 4 2 1 6 6 C 1.53035 * 109.53769 * 61.36866 * 5 4 2 7 7 C 1.53622 * 109.24032 * 298.50947 * 6 5 4 8 8 H 1.09003 * 109.74307 * 295.11834 * 7 6 5 9 9 C 1.50703 * 109.66493 * 174.55111 * 7 6 5 10 10 O 1.20827 * 120.00184 * 282.47174 * 9 7 6 11 11 O 1.34232 * 120.00340 * 102.47449 * 9 7 6 12 12 N 1.46924 * 108.54667 * 54.85466 * 7 6 5 13 13 C 1.36941 * 120.63185 * 126.36765 * 12 7 6 14 14 H 1.08002 * 120.00036 * 231.06431 * 13 12 7 15 15 C 1.38807 * 119.99921 * 51.05609 * 13 12 7 16 16 N 1.31617 * 119.99787 * 16.54933 * 15 13 12 17 17 Si 1.86797 * 119.99964 * 196.82603 * 15 13 12 18 18 H 1.48503 * 109.46992 * 179.72686 * 17 15 13 19 19 H 1.48499 * 109.47007 * 299.72270 * 17 15 13 20 20 H 1.48502 * 109.47504 * 59.72745 * 17 15 13 21 21 H 1.08999 * 109.47064 * 299.71400 * 1 2 3 22 22 H 1.08996 * 109.47527 * 59.72432 * 1 2 3 23 23 H 1.09005 * 109.46540 * 179.72374 * 1 2 3 24 24 H 1.08994 * 109.50062 * 305.52593 * 4 2 1 25 25 H 1.09005 * 109.49752 * 65.62473 * 4 2 1 26 26 H 1.09003 * 109.45640 * 181.38461 * 5 4 2 27 27 H 1.08997 * 109.46317 * 301.35843 * 5 4 2 28 28 H 1.09004 * 109.50096 * 58.58246 * 6 5 4 29 29 H 1.08997 * 109.49980 * 178.68019 * 6 5 4 30 30 H 0.96695 * 117.00097 * 180.02562 * 11 9 7 31 31 H 0.97000 * 120.00601 * 358.91088 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2444 5 6 3.5675 -0.8493 -1.1690 6 6 3.9570 -1.6655 0.0656 7 6 3.4657 -0.9401 1.3276 8 1 3.9877 0.0110 1.4324 9 6 3.7251 -1.7981 2.5391 10 8 3.0005 -2.7337 2.7832 11 8 4.7611 -1.5229 3.3471 12 7 2.0226 -0.6979 1.1954 13 6 1.1538 -1.1098 2.1705 14 1 0.2846 -1.6945 1.9074 15 6 1.3902 -0.7760 3.4969 16 7 2.2383 0.1862 3.7922 17 14 0.5106 -1.6976 4.8630 18 1 0.9386 -1.1587 6.1789 19 1 -0.9565 -1.5256 4.7112 20 1 0.8506 -3.1411 4.7851 21 1 -0.3633 0.5094 0.8925 22 1 -0.3634 0.5181 -0.8874 23 1 -0.3632 -1.0277 -0.0050 24 1 1.6031 -1.7270 -1.2891 25 1 1.7660 -0.1696 -2.1366 26 1 3.9378 -1.3474 -2.0651 27 1 4.0061 0.1461 -1.0992 28 1 3.4984 -2.6527 0.0087 29 1 5.0413 -1.7693 0.1060 30 1 4.8874 -2.1015 4.1114 31 1 2.7100 0.6515 3.0837 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594214247.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:31 Heat of formation + Delta-G solvation = -102.890106 kcal Electronic energy + Delta-G solvation = -15624.631438 eV Core-core repulsion = 13098.305106 eV Total energy + Delta-G solvation = -2526.326332 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.26667 -39.09627 -36.70318 -35.15947 -33.69848 -31.94195 -28.36312 -26.84074 -25.22457 -22.81454 -21.90969 -20.89198 -18.92979 -18.74526 -17.18601 -16.81868 -16.10560 -15.80589 -15.53732 -15.32043 -14.61039 -14.39270 -13.99405 -13.55785 -13.10201 -12.93165 -12.73936 -12.64159 -12.08279 -12.01406 -11.94174 -11.90530 -11.64360 -11.52788 -11.13497 -10.90880 -10.31552 -8.78956 -8.07217 -5.65088 1.41904 1.57595 1.63761 1.77297 2.43350 2.57518 3.23504 3.47306 3.97702 4.04299 4.16434 4.23529 4.40197 4.59443 4.66065 4.77602 4.84764 4.98884 4.99865 5.06180 5.16858 5.18390 5.31180 5.51656 5.60614 5.90467 6.06063 6.44392 7.06245 7.37881 7.65358 8.20970 8.97620 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.030408 B = 0.016721 C = 0.012355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.597099 B = 1674.163780 C = 2265.825041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.125 4.125 5 C -0.103 4.103 6 C -0.118 4.118 7 C 0.180 3.820 8 H 0.046 0.954 9 C 0.484 3.516 10 O -0.525 6.525 11 O -0.521 6.521 12 N -0.601 5.601 13 C -0.314 4.314 14 H 0.026 0.974 15 C -0.049 4.049 16 N -0.928 5.928 17 Si 1.096 2.904 18 H -0.288 1.288 19 H -0.274 1.274 20 H -0.290 1.290 21 H 0.033 0.967 22 H 0.077 0.923 23 H 0.039 0.961 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.409 0.591 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.262 -1.270 -8.263 8.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.061 3.939 3 H 0.043 0.957 4 C -0.164 4.164 5 C -0.140 4.140 6 C -0.157 4.157 7 C 0.074 3.926 8 H 0.064 0.936 9 C 0.326 3.674 10 O -0.412 6.412 11 O -0.333 6.333 12 N -0.330 5.330 13 C -0.445 4.445 14 H 0.043 0.957 15 C -0.248 4.248 16 N -0.569 5.569 17 Si 0.923 3.077 18 H -0.214 1.214 19 H -0.200 1.200 20 H -0.217 1.217 21 H 0.052 0.948 22 H 0.096 0.904 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.267 0.733 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.794 -1.383 -6.898 7.570 hybrid contribution 0.201 -0.353 -0.602 0.726 sum 2.995 -1.737 -7.500 8.261 Atomic orbital electron populations 1.21630 0.94844 1.00753 1.00563 1.20791 0.94127 0.93127 0.85905 0.95694 1.22001 0.96097 1.00485 0.97804 1.21398 0.95860 1.00144 0.96625 1.21968 1.00625 0.98912 0.94222 1.20316 0.88318 0.94509 0.89505 0.93622 1.23273 0.76739 0.83308 0.84045 1.90553 1.45564 1.31495 1.73590 1.84466 1.48916 1.60127 1.39806 1.44211 1.00276 1.66894 1.21612 1.19479 1.06760 1.29497 0.88749 0.95684 1.27088 1.00545 0.96205 1.00955 1.70957 1.29859 1.20065 1.36049 0.83086 0.75600 0.75025 0.74011 1.21410 1.20003 1.21724 0.94784 0.90434 0.94167 0.93277 0.89329 0.89286 0.91419 0.93095 0.90141 0.73275 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 8.17 71.98 0.59 -4.05 16 2 C 0.16 6.64 3.49 44.97 0.16 6.79 16 3 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.13 -3.95 5.37 30.67 0.16 -3.79 16 5 C -0.10 -2.97 5.88 30.62 0.18 -2.79 16 6 C -0.12 -4.21 5.38 30.82 0.17 -4.04 16 7 C 0.18 8.18 2.32 44.37 0.10 8.28 16 8 H 0.05 2.14 7.80 -2.39 -0.02 2.12 16 9 C 0.48 23.63 4.71 71.24 0.34 23.96 16 10 O -0.52 -28.63 14.40 21.96 0.32 -28.31 16 11 O -0.52 -22.31 13.42 -51.44 -0.69 -23.00 16 12 N -0.60 -29.62 2.49 -654.87 -1.63 -31.25 16 13 C -0.31 -17.69 6.09 84.03 0.51 -17.18 16 14 H 0.03 1.51 7.06 -2.91 -0.02 1.48 16 15 C -0.05 -2.85 3.30 84.86 0.28 -2.57 16 16 N -0.93 -55.64 12.51 21.65 0.27 -55.37 16 17 Si 1.10 54.69 29.34 68.60 2.01 56.71 16 18 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 21 H 0.03 1.47 7.68 -2.39 -0.02 1.45 16 22 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.04 1.61 7.50 -2.38 -0.02 1.59 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.41 14.10 9.10 -74.06 -0.67 13.42 16 31 H 0.26 15.60 6.77 -92.71 -0.63 14.98 16 Total: -1.00 -68.99 249.25 3.35 -65.64 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.59 Total: 10.94 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 2.49 Total: 4.64 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -1.36 Total: -86.62 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -0.37 Total: -51.31 kcal Atomic # 14 Polarization: 54.69 SS G_CDS: 2.01 Total: 56.71 kcal Total: -68.99 3.35 -65.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594214247.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.248 kcal (2) G-P(sol) polarization free energy of solvation -68.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds