Wall clock time and date at job start Sun Mar 29 2020 22:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36933 * 119.99700 * 2 1 4 4 H 1.08003 * 119.99955 * 201.65953 * 3 2 1 5 5 C 1.38815 * 120.00432 * 21.66765 * 3 2 1 6 6 N 1.31615 * 119.99563 * 10.37418 * 5 3 2 7 7 Si 1.86796 * 120.00071 * 190.37765 * 5 3 2 8 8 H 1.48500 * 109.47428 * 59.99756 * 7 5 3 9 9 H 1.48499 * 109.46909 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47311 * 299.99291 * 7 5 3 11 11 C 1.46498 * 120.00253 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.46801 * 265.23003 * 11 2 1 13 13 C 1.53001 * 115.54592 * 175.52347 * 12 11 2 14 14 C 1.50705 * 109.47410 * 64.94068 * 13 12 11 15 15 O 1.20824 * 119.99776 * 3.78784 * 14 13 12 16 16 O 1.34230 * 120.00027 * 184.06753 * 14 13 12 17 17 C 1.52992 * 117.49965 * 321.18574 * 12 11 2 18 18 C 1.52993 * 117.50010 * 29.85083 * 12 11 2 19 19 H 1.09006 * 109.46716 * 275.28819 * 1 2 3 20 20 H 1.09000 * 109.47304 * 35.29043 * 1 2 3 21 21 H 1.09000 * 109.47514 * 155.29288 * 1 2 3 22 22 H 0.97006 * 119.99703 * 180.02562 * 6 5 3 23 23 H 1.08997 * 109.47544 * 145.22320 * 11 2 1 24 24 H 1.09007 * 109.47115 * 25.22312 * 11 2 1 25 25 H 1.09006 * 109.47469 * 304.93773 * 13 12 11 26 26 H 1.09002 * 109.47172 * 184.94096 * 13 12 11 27 27 H 0.96690 * 116.99803 * 179.72373 * 16 14 13 28 28 H 1.08997 * 117.50584 * 215.00423 * 17 12 11 29 29 H 1.09002 * 117.49682 * 0.03175 * 17 12 11 30 30 H 1.08999 * 117.50056 * 359.97438 * 18 12 11 31 31 H 1.09004 * 117.49843 * 145.00181 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1724 1.2190 -0.3452 5 6 1.5291 2.3456 0.4438 6 7 0.3639 2.2771 1.0520 7 14 2.3478 4.0034 0.1779 8 1 2.5395 4.2332 -1.2767 9 1 1.4875 5.0760 0.7389 10 1 3.6670 4.0191 0.8596 11 6 2.1975 -1.2687 -0.0006 12 6 2.5564 -1.6509 1.4368 13 6 3.2340 -3.0120 1.6080 14 6 4.5797 -2.9921 0.9300 15 8 4.9876 -1.9722 0.4268 16 8 5.3227 -4.1090 0.8801 17 6 2.9830 -0.5257 2.3815 18 6 1.6125 -1.1869 2.5479 19 1 -0.3633 0.0947 1.0234 20 1 -0.3634 0.8388 -0.5937 21 1 -0.3634 -0.9336 -0.4295 22 1 -0.0699 3.0875 1.3619 23 1 3.1102 -1.1611 -0.5866 24 1 1.5741 -2.0481 -0.4389 25 1 2.6122 -3.7866 1.1589 26 1 3.3651 -3.2217 2.6696 27 1 6.1769 -4.0482 0.4311 28 1 3.7463 -0.7549 3.1251 29 1 3.0076 0.4870 1.9792 30 1 0.7361 -0.6089 2.2549 31 1 1.4742 -1.8513 3.4009 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598376263.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:16 Heat of formation + Delta-G solvation = -39.690579 kcal Electronic energy + Delta-G solvation = -14891.959111 eV Core-core repulsion = 12368.373316 eV Total energy + Delta-G solvation = -2523.585795 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.02697 -37.69723 -35.73344 -34.25963 -30.86421 -29.50028 -26.44910 -25.71339 -22.20922 -21.30529 -20.98396 -18.13293 -17.68755 -16.63940 -16.03747 -15.64589 -14.79137 -14.65197 -13.58961 -13.40514 -12.78062 -12.64286 -12.28050 -11.54839 -11.40437 -11.12745 -10.89608 -10.81197 -10.69027 -10.34033 -10.26206 -10.12197 -9.95997 -9.69210 -9.27714 -8.73410 -8.39694 -6.67001 -5.63226 -3.06311 2.55096 3.28455 3.45509 3.49924 3.52229 4.58086 4.76808 5.14683 5.32836 5.53692 5.67646 5.72476 5.83006 5.94942 6.05514 6.35305 6.55984 6.65388 6.69467 6.81237 6.89507 7.05245 7.22842 7.47332 7.55951 7.85896 7.93700 8.20730 8.49952 9.35089 9.97719 10.46581 11.41449 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038885 B = 0.009787 C = 0.008915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.902753 B = 2860.341898 C = 3140.083297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.599 5.599 3 C -0.239 4.239 4 H 0.068 0.932 5 C -0.001 4.001 6 N -0.910 5.910 7 Si 0.901 3.099 8 H -0.286 1.286 9 H -0.292 1.292 10 H -0.284 1.284 11 C 0.184 3.816 12 C -0.149 4.149 13 C -0.071 4.071 14 C 0.470 3.530 15 O -0.492 6.492 16 O -0.529 6.529 17 C -0.153 4.153 18 C -0.163 4.163 19 H 0.032 0.968 20 H 0.043 0.957 21 H -0.006 1.006 22 H 0.251 0.749 23 H 0.055 0.945 24 H 0.036 0.964 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.403 0.597 28 H 0.062 0.938 29 H 0.127 0.873 30 H 0.118 0.882 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.598 -10.835 1.504 11.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.321 5.321 3 C -0.369 4.369 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.556 5.556 7 Si 0.731 3.269 8 H -0.213 1.213 9 H -0.218 1.218 10 H -0.210 1.210 11 C 0.057 3.943 12 C -0.152 4.152 13 C -0.109 4.109 14 C 0.312 3.688 15 O -0.378 6.378 16 O -0.342 6.342 17 C -0.190 4.190 18 C -0.199 4.199 19 H 0.050 0.950 20 H 0.062 0.938 21 H 0.012 0.988 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.260 0.740 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.136 0.864 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.191 -10.401 1.602 11.328 hybrid contribution 1.049 0.920 -0.195 1.409 sum 5.240 -9.481 1.408 10.924 Atomic orbital electron populations 1.20886 0.82639 0.95243 0.99355 1.43920 1.01737 1.00674 1.85788 1.19129 0.97357 0.85132 1.35255 0.91385 1.24955 0.97612 0.98146 0.99112 1.70038 1.16720 1.26796 1.42090 0.86380 0.78568 0.84090 0.77815 1.21289 1.21790 1.21033 1.20364 0.95506 0.87852 0.90606 1.22244 1.04004 0.91945 0.97031 1.20899 0.89240 0.99907 1.00835 1.23767 0.87197 0.80299 0.77551 1.90764 1.71541 1.32901 1.42576 1.84557 1.34884 1.40431 1.74324 1.23053 0.95721 1.00400 0.99799 1.23075 0.96618 1.02941 0.97316 0.94994 0.93811 0.98775 0.93892 0.92727 0.94567 0.88212 0.88682 0.73952 0.91965 0.85515 0.86420 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 8.35 59.85 0.50 4.51 16 2 N -0.60 -15.07 2.10 -181.11 -0.38 -15.45 16 3 C -0.24 -6.58 7.17 -15.06 -0.11 -6.69 16 4 H 0.07 1.92 7.85 -52.48 -0.41 1.51 16 5 C 0.00 -0.02 5.16 -17.43 -0.09 -0.11 16 6 N -0.91 -26.05 10.49 55.49 0.58 -25.47 16 7 Si 0.90 22.31 29.57 -169.99 -5.03 17.29 16 8 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 9 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 11 C 0.18 3.98 5.63 -4.04 -0.02 3.96 16 12 C -0.15 -2.84 1.61 -154.51 -0.25 -3.09 16 13 C -0.07 -1.03 5.70 -27.88 -0.16 -1.19 16 14 C 0.47 7.21 8.17 36.01 0.29 7.50 16 15 O -0.49 -9.50 15.26 -18.75 -0.29 -9.79 16 16 O -0.53 -6.21 13.42 -39.26 -0.53 -6.74 16 17 C -0.15 -3.24 9.54 -26.70 -0.25 -3.49 16 18 C -0.16 -3.22 9.57 -26.70 -0.26 -3.47 16 19 H 0.03 0.83 5.66 -51.93 -0.29 0.53 16 20 H 0.04 1.16 7.19 -51.93 -0.37 0.79 16 21 H -0.01 -0.14 7.79 -51.93 -0.40 -0.54 16 22 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 23 H 0.05 1.26 6.59 -51.93 -0.34 0.91 16 24 H 0.04 0.71 7.79 -51.92 -0.40 0.31 16 25 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.09 1.22 8.09 -51.93 -0.42 0.80 16 27 H 0.40 3.06 9.10 45.56 0.41 3.48 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.13 3.23 5.61 -51.93 -0.29 2.93 16 30 H 0.12 2.72 5.18 -51.93 -0.27 2.46 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 256.64 15.07 3.87 3.87 Total: -1.00 -30.99 256.64 -5.31 -36.30 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -3.20 Total: 2.07 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.34 Total: -2.08 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.20 Total: -40.92 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.81 Total: -16.53 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.99 -5.31 -36.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598376263.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.387 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds