Wall clock time and date at job start Sun Mar 29 2020 22:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36933 * 119.99700 * 2 1 4 4 H 1.08003 * 119.99955 * 201.65953 * 3 2 1 5 5 C 1.38815 * 120.00432 * 21.66765 * 3 2 1 6 6 N 1.31615 * 119.99563 * 10.37418 * 5 3 2 7 7 Si 1.86796 * 120.00071 * 190.37765 * 5 3 2 8 8 H 1.48500 * 109.47428 * 59.99756 * 7 5 3 9 9 H 1.48499 * 109.46909 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47311 * 299.99291 * 7 5 3 11 11 C 1.46498 * 120.00253 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.46801 * 265.23003 * 11 2 1 13 13 C 1.53001 * 115.54592 * 175.52347 * 12 11 2 14 14 C 1.50705 * 109.47410 * 64.94068 * 13 12 11 15 15 O 1.20824 * 119.99776 * 3.78784 * 14 13 12 16 16 O 1.34230 * 120.00027 * 184.06753 * 14 13 12 17 17 C 1.52992 * 117.49965 * 321.18574 * 12 11 2 18 18 C 1.52993 * 117.50010 * 29.85083 * 12 11 2 19 19 H 1.09006 * 109.46716 * 275.28819 * 1 2 3 20 20 H 1.09000 * 109.47304 * 35.29043 * 1 2 3 21 21 H 1.09000 * 109.47514 * 155.29288 * 1 2 3 22 22 H 0.97006 * 119.99703 * 180.02562 * 6 5 3 23 23 H 1.08997 * 109.47544 * 145.22320 * 11 2 1 24 24 H 1.09007 * 109.47115 * 25.22312 * 11 2 1 25 25 H 1.09006 * 109.47469 * 304.93773 * 13 12 11 26 26 H 1.09002 * 109.47172 * 184.94096 * 13 12 11 27 27 H 0.96690 * 116.99803 * 179.72373 * 16 14 13 28 28 H 1.08997 * 117.50584 * 215.00423 * 17 12 11 29 29 H 1.09002 * 117.49682 * 0.03175 * 17 12 11 30 30 H 1.08999 * 117.50056 * 359.97438 * 18 12 11 31 31 H 1.09004 * 117.49843 * 145.00181 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1724 1.2190 -0.3452 5 6 1.5291 2.3456 0.4438 6 7 0.3639 2.2771 1.0520 7 14 2.3478 4.0034 0.1779 8 1 2.5395 4.2332 -1.2767 9 1 1.4875 5.0760 0.7389 10 1 3.6670 4.0191 0.8596 11 6 2.1975 -1.2687 -0.0006 12 6 2.5564 -1.6509 1.4368 13 6 3.2340 -3.0120 1.6080 14 6 4.5797 -2.9921 0.9300 15 8 4.9876 -1.9722 0.4268 16 8 5.3227 -4.1090 0.8801 17 6 2.9830 -0.5257 2.3815 18 6 1.6125 -1.1869 2.5479 19 1 -0.3633 0.0947 1.0234 20 1 -0.3634 0.8388 -0.5937 21 1 -0.3634 -0.9336 -0.4295 22 1 -0.0699 3.0875 1.3619 23 1 3.1102 -1.1611 -0.5866 24 1 1.5741 -2.0481 -0.4389 25 1 2.6122 -3.7866 1.1589 26 1 3.3651 -3.2217 2.6696 27 1 6.1769 -4.0482 0.4311 28 1 3.7463 -0.7549 3.1251 29 1 3.0076 0.4870 1.9792 30 1 0.7361 -0.6089 2.2549 31 1 1.4742 -1.8513 3.4009 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598376263.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:16 Heat of formation + Delta-G solvation = -60.126621 kcal Electronic energy + Delta-G solvation = -14892.845284 eV Core-core repulsion = 12368.373316 eV Total energy + Delta-G solvation = -2524.471968 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.25105 -39.26208 -36.91540 -36.11956 -32.91853 -30.79757 -28.27846 -27.75082 -23.75231 -22.92021 -22.60074 -19.64166 -18.83778 -18.66392 -17.33856 -16.93020 -16.58314 -16.34719 -15.42433 -15.23175 -14.36678 -13.99959 -13.75868 -13.32804 -12.97548 -12.83221 -12.66733 -12.62650 -12.30172 -12.16604 -12.01014 -11.84193 -11.72066 -11.54573 -10.85901 -10.52264 -10.28798 -8.71186 -7.76085 -5.19973 1.39678 1.45163 1.45697 1.52357 2.21396 2.53502 3.25984 3.36236 3.66772 3.98247 4.21184 4.25285 4.37996 4.67309 4.69424 4.86639 4.90878 5.00745 5.04128 5.25479 5.28583 5.42700 5.58758 5.69380 5.76215 5.78273 5.93545 6.39761 7.16912 7.23822 7.95715 8.37534 9.26084 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038885 B = 0.009787 C = 0.008915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.902753 B = 2860.341898 C = 3140.083297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.611 5.611 3 C -0.238 4.238 4 H 0.053 0.947 5 C -0.046 4.046 6 N -0.930 5.930 7 Si 0.954 3.046 8 H -0.284 1.284 9 H -0.292 1.292 10 H -0.283 1.283 11 C 0.179 3.821 12 C -0.133 4.133 13 C -0.066 4.066 14 C 0.479 3.521 15 O -0.543 6.543 16 O -0.514 6.514 17 C -0.173 4.173 18 C -0.153 4.153 19 H 0.016 0.984 20 H 0.014 0.986 21 H 0.025 0.975 22 H 0.245 0.755 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.132 0.868 26 H 0.125 0.875 27 H 0.423 0.577 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 -13.026 1.980 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.334 5.334 3 C -0.368 4.368 4 H 0.071 0.929 5 C -0.241 4.241 6 N -0.578 5.578 7 Si 0.784 3.216 8 H -0.210 1.210 9 H -0.218 1.218 10 H -0.210 1.210 11 C 0.053 3.947 12 C -0.136 4.136 13 C -0.104 4.104 14 C 0.322 3.678 15 O -0.432 6.432 16 O -0.328 6.328 17 C -0.210 4.210 18 C -0.190 4.190 19 H 0.034 0.966 20 H 0.032 0.968 21 H 0.044 0.956 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.150 0.850 26 H 0.143 0.857 27 H 0.284 0.716 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.779 -12.644 2.071 13.675 hybrid contribution 0.937 1.502 -0.381 1.811 sum 5.716 -11.142 1.690 12.636 Atomic orbital electron populations 1.20656 0.82451 0.95510 0.98097 1.44053 1.02051 1.01331 1.85951 1.19138 0.96761 0.86502 1.34447 0.92893 1.25514 0.98352 1.00712 0.99563 1.70177 1.17632 1.26864 1.43110 0.85540 0.77651 0.80871 0.77583 1.21025 1.21767 1.20965 1.20476 0.94849 0.86935 0.92481 1.22042 1.03251 0.93576 0.94719 1.20895 0.89009 0.97444 1.03032 1.23824 0.87453 0.80098 0.76407 1.90775 1.72730 1.34819 1.44893 1.84493 1.35896 1.38395 1.74038 1.22850 0.97621 0.98826 1.01718 1.22963 0.94359 1.02781 0.98855 0.96559 0.96763 0.95617 0.94512 0.94425 0.92138 0.84994 0.85731 0.71628 0.89904 0.90429 0.90070 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.77 8.35 127.77 1.07 9.83 16 2 N -0.61 -31.00 2.10 -726.92 -1.53 -32.53 16 3 C -0.24 -13.44 7.17 84.03 0.60 -12.84 16 4 H 0.05 3.10 7.85 -2.91 -0.02 3.08 16 5 C -0.05 -2.65 5.16 84.86 0.44 -2.21 16 6 N -0.93 -54.66 10.49 21.65 0.23 -54.43 16 7 Si 0.95 46.91 29.57 68.60 2.03 48.94 16 8 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 9 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 10 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 11 C 0.18 7.54 5.63 86.38 0.49 8.02 16 12 C -0.13 -4.80 1.61 -52.18 -0.08 -4.89 16 13 C -0.07 -1.66 5.70 29.85 0.17 -1.49 16 14 C 0.48 13.20 8.17 71.24 0.58 13.79 16 15 O -0.54 -20.31 15.26 21.97 0.34 -19.98 16 16 O -0.51 -10.06 13.42 -51.42 -0.69 -10.75 16 17 C -0.17 -7.23 9.54 30.62 0.29 -6.94 16 18 C -0.15 -5.77 9.57 30.62 0.29 -5.48 16 19 H 0.02 0.86 5.66 -2.38 -0.01 0.85 16 20 H 0.01 0.75 7.19 -2.39 -0.02 0.73 16 21 H 0.03 1.08 7.79 -2.39 -0.02 1.06 16 22 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 23 H 0.04 1.72 6.59 -2.39 -0.02 1.71 16 24 H 0.06 2.23 7.79 -2.38 -0.02 2.21 16 25 H 0.13 2.55 8.14 -2.38 -0.02 2.53 16 26 H 0.12 2.50 8.09 -2.39 -0.02 2.48 16 27 H 0.42 4.97 9.10 -74.06 -0.67 4.30 16 28 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.08 4.07 5.61 -2.39 -0.01 4.05 16 30 H 0.08 3.74 5.18 -2.39 -0.01 3.73 16 31 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 Total: -1.00 -68.92 256.64 4.69 -64.24 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 0.47 Total: 6.71 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 3.85 Total: -2.20 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -1.30 Total: -86.96 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.35 Total: -30.73 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -68.92 4.69 -64.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598376263.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.111 kcal (2) G-P(sol) polarization free energy of solvation -68.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds