Wall clock time and date at job start Sun Mar 29 2020 21:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08992 * 109.47438 * 2 1 4 4 C 1.50703 * 109.47388 * 239.99641 * 2 1 3 5 5 H 1.07993 * 120.00143 * 240.00606 * 4 2 1 6 6 C 1.37873 * 119.99770 * 60.00053 * 4 2 1 7 7 N 1.31515 * 120.00129 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00033 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47122 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47276 * 119.99902 * 8 6 4 11 11 H 1.48502 * 109.47170 * 239.99891 * 8 6 4 12 12 N 1.46903 * 109.46995 * 119.99915 * 2 1 3 13 13 C 1.46900 * 110.99994 * 274.99781 * 12 2 1 14 14 C 1.53001 * 109.47331 * 185.25788 * 13 12 2 15 15 C 1.50698 * 115.54551 * 65.06315 * 14 13 12 16 16 O 1.20832 * 119.99731 * 245.61210 * 15 14 13 17 17 O 1.34226 * 120.00547 * 65.88754 * 15 14 13 18 18 C 1.52993 * 117.50097 * 210.73062 * 14 13 12 19 19 C 1.52997 * 117.50208 * 279.39024 * 14 13 12 20 20 H 1.09005 * 109.47301 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47219 * 300.00039 * 1 2 3 22 22 H 1.08996 * 109.47015 * 60.00023 * 1 2 3 23 23 H 0.97002 * 120.00131 * 179.97438 * 7 6 4 24 24 H 1.00902 * 111.00226 * 38.95314 * 12 2 1 25 25 H 1.09000 * 109.46897 * 65.25793 * 13 12 2 26 26 H 1.08995 * 109.47267 * 305.26275 * 13 12 2 27 27 H 0.96701 * 117.00353 * 179.71975 * 17 15 14 28 28 H 1.08998 * 117.50017 * 215.00720 * 18 14 13 29 29 H 1.09008 * 117.49867 * 0.02562 * 18 14 13 30 30 H 1.09010 * 117.49810 * 359.97438 * 19 14 13 31 31 H 1.08998 * 117.49962 * 144.96817 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1455 -2.2879 -3.6036 10 1 1.1661 -1.5869 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.7176 -0.4965 3.5387 15 6 4.1602 -0.8955 3.3633 16 8 4.4640 -2.0645 3.3309 17 8 5.1083 0.0477 3.2486 18 6 2.2657 -0.0780 4.9391 19 6 1.8230 -1.4249 4.3624 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7096 1.1617 -3.4844 24 1 1.4495 -1.4979 1.4101 25 1 1.0748 0.5436 2.6112 26 1 2.6839 1.0930 2.0850 27 1 6.0199 -0.2568 3.1420 28 1 3.0117 -0.0912 5.7336 29 1 1.5154 0.7095 5.0115 30 1 0.7816 -1.5231 4.0555 31 1 2.2777 -2.3246 4.7770 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060075.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:57 Heat of formation + Delta-G solvation = -69.845592 kcal Electronic energy + Delta-G solvation = -14353.403790 eV Core-core repulsion = 11828.510376 eV Total energy + Delta-G solvation = -2524.893414 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.20601 -37.46293 -35.79337 -35.25319 -32.28778 -28.88703 -25.63741 -25.11849 -23.53495 -22.48936 -20.16372 -19.65499 -17.61940 -16.84304 -16.03468 -15.44951 -14.71790 -14.50229 -13.86135 -13.82437 -13.38575 -12.79322 -12.03537 -11.83058 -11.62481 -11.57074 -11.26932 -10.99289 -10.83976 -10.74768 -10.41251 -10.19109 -10.11522 -10.01872 -9.77520 -8.99575 -8.35728 -7.27488 -5.97833 -4.00647 2.49808 3.21031 3.32879 3.40466 3.46954 3.70087 4.44554 4.62213 4.78873 5.00853 5.33962 5.44806 5.54728 5.59255 5.85802 5.87737 6.05707 6.08732 6.27826 6.66914 6.76057 6.82698 7.07217 7.33325 7.73279 7.89184 8.20894 8.26174 8.51994 8.60315 9.07203 9.64777 11.09319 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038404 B = 0.007873 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.920663 B = 3555.481741 C = 3937.564239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.493 4.493 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.684 5.684 13 C 0.101 3.899 14 C -0.122 4.122 15 C 0.533 3.467 16 O -0.514 6.514 17 O -0.511 6.511 18 C -0.157 4.157 19 C -0.145 4.145 20 H 0.028 0.972 21 H 0.005 0.995 22 H 0.090 0.910 23 H 0.259 0.741 24 H 0.328 0.672 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.406 0.594 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 -0.207 12.839 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.314 5.314 13 C -0.029 4.029 14 C -0.124 4.124 15 C 0.375 3.625 16 O -0.401 6.401 17 O -0.322 6.322 18 C -0.195 4.195 19 C -0.182 4.182 20 H 0.047 0.953 21 H 0.024 0.976 22 H 0.108 0.892 23 H 0.069 0.931 24 H 0.145 0.855 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.264 0.736 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.463 -0.196 12.550 12.791 hybrid contribution -0.072 -0.492 -0.841 0.977 sum 2.391 -0.688 11.709 11.970 Atomic orbital electron populations 1.22436 1.00598 0.99257 1.00520 1.19197 0.89658 0.94421 0.86335 0.94762 1.21198 1.30052 1.12399 0.89560 0.91907 1.24947 0.95357 0.95225 0.99050 1.69891 1.37473 1.23234 1.23229 0.86452 0.78521 0.79696 0.82814 1.19732 1.21191 1.21132 1.60726 1.58562 1.08969 1.03148 1.21387 0.97534 0.95373 0.88616 1.21008 0.89098 1.06743 0.95504 1.21947 0.86958 0.82886 0.70715 1.90674 1.82816 1.20177 1.46470 1.84517 1.20837 1.42242 1.84643 1.23128 1.03413 0.99206 0.93719 1.23082 0.99838 0.94324 1.00990 0.95277 0.97643 0.89175 0.93137 0.85482 0.94774 0.90271 0.73586 0.88368 0.87459 0.87466 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 8.94 37.15 0.33 -3.69 16 2 C 0.21 5.33 2.57 -68.86 -0.18 5.16 16 3 H 0.03 0.94 7.71 -51.93 -0.40 0.54 16 4 C -0.49 -13.90 8.84 -34.44 -0.30 -14.21 16 5 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.83 11.32 55.43 0.63 -25.20 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 N -0.68 -14.77 6.11 -107.96 -0.66 -15.42 16 13 C 0.10 1.79 5.34 -3.82 -0.02 1.77 16 14 C -0.12 -1.85 2.21 -155.67 -0.34 -2.19 16 15 C 0.53 8.90 7.49 36.00 0.27 9.17 16 16 O -0.51 -9.89 17.46 -18.76 -0.33 -10.22 16 17 O -0.51 -7.26 13.42 -39.25 -0.53 -7.78 16 18 C -0.16 -1.78 9.93 -26.70 -0.27 -2.04 16 19 C -0.15 -1.84 9.78 -26.70 -0.26 -2.10 16 20 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 21 H 0.00 0.10 7.56 -51.93 -0.39 -0.29 16 22 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.33 6.83 8.53 -39.29 -0.34 6.49 16 25 H 0.03 0.57 7.52 -51.93 -0.39 0.18 16 26 H 0.08 1.48 7.92 -51.93 -0.41 1.06 16 27 H 0.41 3.91 9.10 45.56 0.41 4.33 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.11 1.06 8.14 -51.92 -0.42 0.63 16 30 H 0.11 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.10 1.31 8.00 -51.93 -0.42 0.89 16 LS Contribution 270.66 15.07 4.08 4.08 Total: -1.00 -31.74 270.66 -6.17 -37.91 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -3.48 Total: 6.51 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.87 Total: -6.70 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.03 Total: -40.62 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.85 Total: -18.00 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.74 -6.17 -37.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060075.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.934 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds