Wall clock time and date at job start Sun Mar 29 2020 21:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08992 * 109.47438 * 2 1 4 4 C 1.50703 * 109.47388 * 239.99641 * 2 1 3 5 5 H 1.07993 * 120.00143 * 240.00606 * 4 2 1 6 6 C 1.37873 * 119.99770 * 60.00053 * 4 2 1 7 7 N 1.31515 * 120.00129 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00033 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47122 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47276 * 119.99902 * 8 6 4 11 11 H 1.48502 * 109.47170 * 239.99891 * 8 6 4 12 12 N 1.46903 * 109.46995 * 119.99915 * 2 1 3 13 13 C 1.46900 * 110.99994 * 274.99781 * 12 2 1 14 14 C 1.53001 * 109.47331 * 185.25788 * 13 12 2 15 15 C 1.50698 * 115.54551 * 65.06315 * 14 13 12 16 16 O 1.20832 * 119.99731 * 245.61210 * 15 14 13 17 17 O 1.34226 * 120.00547 * 65.88754 * 15 14 13 18 18 C 1.52993 * 117.50097 * 210.73062 * 14 13 12 19 19 C 1.52997 * 117.50208 * 279.39024 * 14 13 12 20 20 H 1.09005 * 109.47301 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47219 * 300.00039 * 1 2 3 22 22 H 1.08996 * 109.47015 * 60.00023 * 1 2 3 23 23 H 0.97002 * 120.00131 * 179.97438 * 7 6 4 24 24 H 1.00902 * 111.00226 * 38.95314 * 12 2 1 25 25 H 1.09000 * 109.46897 * 65.25793 * 13 12 2 26 26 H 1.08995 * 109.47267 * 305.26275 * 13 12 2 27 27 H 0.96701 * 117.00353 * 179.71975 * 17 15 14 28 28 H 1.08998 * 117.50017 * 215.00720 * 18 14 13 29 29 H 1.09008 * 117.49867 * 0.02562 * 18 14 13 30 30 H 1.09010 * 117.49810 * 359.97438 * 19 14 13 31 31 H 1.08998 * 117.49962 * 144.96817 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1455 -2.2879 -3.6036 10 1 1.1661 -1.5869 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.7176 -0.4965 3.5387 15 6 4.1602 -0.8955 3.3633 16 8 4.4640 -2.0645 3.3309 17 8 5.1083 0.0477 3.2486 18 6 2.2657 -0.0780 4.9391 19 6 1.8230 -1.4249 4.3624 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7096 1.1617 -3.4844 24 1 1.4495 -1.4979 1.4101 25 1 1.0748 0.5436 2.6112 26 1 2.6839 1.0930 2.0850 27 1 6.0199 -0.2568 3.1420 28 1 3.0117 -0.0912 5.7336 29 1 1.5154 0.7095 5.0115 30 1 0.7816 -1.5231 4.0555 31 1 2.2777 -2.3246 4.7770 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060075.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:56 Heat of formation + Delta-G solvation = -92.782242 kcal Electronic energy + Delta-G solvation = -14354.398398 eV Core-core repulsion = 11828.510376 eV Total energy + Delta-G solvation = -2525.888022 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.43843 -38.74134 -37.19646 -36.79564 -34.26789 -30.65602 -27.28031 -26.95744 -24.96887 -23.44118 -22.08906 -20.85166 -18.94200 -18.49844 -17.60103 -16.87701 -16.57991 -15.88039 -15.32207 -15.18409 -14.93770 -14.48691 -13.60466 -13.52381 -13.25896 -12.87015 -12.75446 -12.53094 -12.45691 -12.43303 -12.18283 -12.06933 -11.63145 -11.31120 -11.14933 -10.98626 -10.49756 -8.99019 -8.11251 -6.21897 1.23740 1.39767 1.41734 1.54202 2.13182 2.42309 2.65922 3.16867 3.41742 3.75585 3.93169 4.07058 4.34896 4.64288 4.66053 4.71244 4.78717 4.92226 4.94527 4.97030 5.09340 5.17680 5.41505 5.63458 5.69243 5.81530 6.26611 6.62853 6.79550 6.92773 7.05877 7.48037 8.94191 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038404 B = 0.007873 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.920663 B = 3555.481741 C = 3937.564239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H 0.005 0.995 4 C -0.516 4.516 5 H 0.047 0.953 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.280 1.280 12 N -0.694 5.694 13 C 0.107 3.893 14 C -0.154 4.154 15 C 0.530 3.470 16 O -0.548 6.548 17 O -0.510 6.510 18 C -0.124 4.124 19 C -0.141 4.141 20 H 0.031 0.969 21 H 0.031 0.969 22 H 0.062 0.938 23 H 0.262 0.738 24 H 0.333 0.667 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.424 0.576 28 H 0.115 0.885 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 -0.229 13.835 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.023 0.977 4 C -0.555 4.555 5 H 0.065 0.935 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.203 1.203 11 H -0.206 1.206 12 N -0.324 5.324 13 C -0.023 4.023 14 C -0.155 4.155 15 C 0.374 3.626 16 O -0.439 6.439 17 O -0.323 6.323 18 C -0.161 4.161 19 C -0.178 4.178 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.150 0.850 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.285 0.715 28 H 0.133 0.867 29 H 0.147 0.853 30 H 0.136 0.864 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.189 -0.201 13.565 13.742 hybrid contribution 0.064 -0.443 -1.105 1.192 sum 2.253 -0.644 12.460 12.679 Atomic orbital electron populations 1.22224 0.99489 0.99333 1.00408 1.18942 0.90382 0.92672 0.87182 0.97699 1.21461 1.30368 1.12318 0.91347 0.93458 1.25667 0.95483 0.95900 1.01714 1.69998 1.37964 1.24080 1.23961 0.85511 0.78151 0.78540 0.79420 1.19863 1.20298 1.20565 1.60564 1.58493 1.09689 1.03634 1.21313 0.98413 0.94392 0.88156 1.20959 0.88459 1.09597 0.96511 1.22332 0.87912 0.82588 0.69778 1.90653 1.83542 1.21486 1.48185 1.84487 1.22015 1.41778 1.84013 1.23303 1.03196 0.98634 0.90948 1.23179 0.99718 0.94947 1.00001 0.94975 0.94964 0.91942 0.92918 0.84991 0.93024 0.91850 0.71548 0.86705 0.85339 0.86430 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.32 8.94 71.98 0.64 -6.67 16 2 C 0.22 11.02 2.57 44.17 0.11 11.13 16 3 H 0.01 0.28 7.71 -2.39 -0.02 0.27 16 4 C -0.52 -29.44 8.84 25.60 0.23 -29.22 16 5 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -53.16 11.32 21.45 0.24 -52.92 16 8 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 9 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 N -0.69 -29.76 6.11 -495.46 -3.03 -32.79 16 13 C 0.11 3.66 5.34 86.30 0.46 4.12 16 14 C -0.15 -4.39 2.21 -52.93 -0.12 -4.51 16 15 C 0.53 17.25 7.49 71.24 0.53 17.78 16 16 O -0.55 -20.95 17.46 21.95 0.38 -20.57 16 17 O -0.51 -13.97 13.42 -51.38 -0.69 -14.66 16 18 C -0.12 -2.36 9.93 30.61 0.30 -2.06 16 19 C -0.14 -3.23 9.78 30.61 0.30 -2.93 16 20 H 0.03 1.44 8.13 -2.38 -0.02 1.43 16 21 H 0.03 1.30 7.56 -2.39 -0.02 1.28 16 22 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 23 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.33 13.64 8.53 -89.69 -0.76 12.87 16 25 H 0.05 1.59 7.52 -2.39 -0.02 1.57 16 26 H 0.06 2.34 7.92 -2.39 -0.02 2.32 16 27 H 0.42 7.78 9.10 -74.06 -0.67 7.11 16 28 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.13 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.12 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.10 2.37 8.00 -2.39 -0.02 2.35 16 Total: -1.00 -67.92 270.66 1.55 -66.37 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -0.30 Total: 18.94 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 2.91 Total: -11.31 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -2.78 Total: -85.70 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.31 Total: -35.23 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -67.92 1.55 -66.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060075.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.412 kcal (2) G-P(sol) polarization free energy of solvation -67.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds