Wall clock time and date at job start Sun Mar 29 2020 21:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47403 * 2 1 4 4 C 1.50704 * 109.47014 * 119.99692 * 2 1 3 5 5 H 1.08007 * 120.00062 * 120.00006 * 4 2 1 6 6 C 1.37870 * 120.00091 * 300.00042 * 4 2 1 7 7 N 1.31522 * 120.00045 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00100 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47018 * 89.99987 * 8 6 4 10 10 H 1.48496 * 109.46922 * 209.99815 * 8 6 4 11 11 H 1.48496 * 109.47153 * 329.99988 * 8 6 4 12 12 N 1.46903 * 109.47216 * 239.99473 * 2 1 3 13 13 C 1.46905 * 110.99443 * 85.00554 * 12 2 1 14 14 C 1.53000 * 109.46846 * 184.73582 * 13 12 2 15 15 C 1.50706 * 115.54706 * 279.72064 * 14 13 12 16 16 O 1.20828 * 119.99361 * 140.24978 * 15 14 13 17 17 O 1.34222 * 120.00271 * 320.24948 * 15 14 13 18 18 C 1.53005 * 117.50039 * 65.38838 * 14 13 12 19 19 C 1.53008 * 60.03058 * 107.50510 * 18 14 13 20 20 H 1.08998 * 109.46730 * 60.00143 * 1 2 3 21 21 H 1.09003 * 109.47103 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46914 * 300.00454 * 1 2 3 23 23 H 0.96994 * 120.00029 * 179.97438 * 7 6 4 24 24 H 1.00898 * 111.00073 * 321.04852 * 12 2 1 25 25 H 1.08992 * 109.47516 * 64.73142 * 13 12 2 26 26 H 1.08998 * 109.46722 * 304.72810 * 13 12 2 27 27 H 0.96695 * 117.00248 * 179.97438 * 17 15 14 28 28 H 1.09005 * 117.49889 * 215.00040 * 18 14 13 29 29 H 1.08995 * 117.49670 * 0.02562 * 18 14 13 30 30 H 1.08999 * 117.50047 * 107.49697 * 19 18 14 31 31 H 1.09004 * 117.49675 * 252.52797 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8595 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0197 -0.6926 -1.1994 13 6 2.0826 0.2225 -2.3468 14 6 2.4822 -0.5582 -3.6005 15 6 3.9549 -0.8428 -3.7470 16 8 4.3243 -1.9143 -4.1657 17 8 4.8560 0.0939 -3.4123 18 6 1.5037 -1.6153 -4.1164 19 6 1.6811 -0.3009 -4.8793 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.9032 -0.5279 4.4376 24 1 1.4496 -1.4980 -1.4099 25 1 2.8215 0.9996 -2.1518 26 1 1.1054 0.6805 -2.5002 27 1 5.7890 -0.1349 -3.5232 28 1 1.9251 -2.5165 -4.5618 29 1 0.5750 -1.7541 -3.5629 30 1 2.2193 -0.3374 -5.8264 31 1 0.8695 0.4249 -4.8270 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060084.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:59 Heat of formation + Delta-G solvation = -61.009355 kcal Electronic energy + Delta-G solvation = -14395.318159 eV Core-core repulsion = 11870.807913 eV Total energy + Delta-G solvation = -2524.510246 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.36785 -37.65783 -36.03805 -35.33826 -32.25655 -29.69220 -26.08864 -25.09408 -23.57373 -22.58526 -20.17176 -19.76338 -17.77742 -17.05140 -16.35567 -15.56395 -14.91817 -14.66820 -14.00753 -13.88402 -13.66710 -12.84066 -12.48916 -12.14784 -12.04957 -11.65143 -11.58947 -11.37312 -11.06065 -10.84937 -10.37127 -10.25411 -10.21163 -10.12344 -9.49083 -9.16133 -8.56415 -7.45872 -6.03617 -4.01157 2.28259 3.12521 3.25072 3.34784 3.38232 3.66678 4.40465 4.49183 4.68656 4.89761 5.25048 5.26142 5.34924 5.47306 5.70873 5.80416 5.97088 6.01001 6.13304 6.19664 6.30523 6.47722 6.65092 6.71607 7.09163 7.69686 7.88055 8.08468 8.29005 8.69660 9.08128 9.58546 11.10017 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042094 B = 0.007977 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.014906 B = 3509.366102 C = 3772.295796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.183 3.817 3 H 0.035 0.965 4 C -0.498 4.498 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.901 5.901 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.671 5.671 13 C 0.096 3.904 14 C -0.131 4.131 15 C 0.531 3.469 16 O -0.523 6.523 17 O -0.505 6.505 18 C -0.141 4.141 19 C -0.150 4.150 20 H 0.026 0.974 21 H 0.054 0.946 22 H 0.046 0.954 23 H 0.263 0.737 24 H 0.332 0.668 25 H 0.084 0.916 26 H 0.033 0.967 27 H 0.408 0.592 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 3.424 -15.353 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.074 3.926 3 H 0.053 0.947 4 C -0.536 4.536 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.540 5.540 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.301 5.301 13 C -0.034 4.034 14 C -0.133 4.133 15 C 0.374 3.626 16 O -0.412 6.412 17 O -0.316 6.316 18 C -0.178 4.178 19 C -0.187 4.187 20 H 0.045 0.955 21 H 0.073 0.927 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.149 0.851 25 H 0.102 0.898 26 H 0.051 0.949 27 H 0.266 0.734 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.037 3.326 -15.036 15.435 hybrid contribution -0.942 0.756 0.067 1.210 sum -1.978 4.082 -14.969 15.641 Atomic orbital electron populations 1.22862 1.01475 1.00935 0.98900 1.19646 0.88539 0.95187 0.89205 0.94709 1.20975 1.31174 1.13753 0.87710 0.90066 1.24950 0.96034 0.96635 0.95869 1.69888 1.45932 1.40336 0.97826 0.86881 0.80506 0.83942 0.76902 1.20824 1.22412 1.19473 1.60613 1.58306 1.08703 1.02524 1.21497 0.99568 0.94779 0.87565 1.21035 0.86845 1.06988 0.98415 1.21945 0.88043 0.80808 0.71799 1.90677 1.81410 1.25380 1.43713 1.84510 1.21072 1.46123 1.79872 1.23083 0.99391 0.93554 1.01745 1.23167 1.01432 1.00515 0.93617 0.95510 0.92670 0.93567 0.92696 0.85063 0.89781 0.94938 0.73373 0.87240 0.87364 0.88226 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.84 8.64 37.16 0.32 -3.52 16 2 C 0.18 4.28 2.16 -68.86 -0.15 4.13 16 3 H 0.04 0.85 6.91 -51.93 -0.36 0.49 16 4 C -0.50 -14.12 9.42 -34.44 -0.32 -14.45 16 5 H 0.08 2.56 8.06 -52.48 -0.42 2.13 16 6 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 7 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 8 Si 0.89 21.88 24.37 -169.99 -4.14 17.74 16 9 H -0.28 -6.74 6.87 56.52 0.39 -6.36 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 12 N -0.67 -13.58 6.26 -107.95 -0.68 -14.26 16 13 C 0.10 1.57 5.37 -3.82 -0.02 1.55 16 14 C -0.13 -1.86 2.24 -155.62 -0.35 -2.21 16 15 C 0.53 8.28 7.82 36.01 0.28 8.56 16 16 O -0.52 -9.26 17.03 -18.75 -0.32 -9.58 16 17 O -0.51 -6.83 12.89 -39.24 -0.51 -7.34 16 18 C -0.14 -1.71 9.24 -26.72 -0.25 -1.96 16 19 C -0.15 -1.59 9.89 -26.69 -0.26 -1.86 16 20 H 0.03 0.47 7.39 -51.93 -0.38 0.09 16 21 H 0.05 1.12 8.13 -51.93 -0.42 0.70 16 22 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.33 6.33 7.79 -39.29 -0.31 6.02 16 25 H 0.08 1.45 7.69 -51.93 -0.40 1.05 16 26 H 0.03 0.49 7.15 -51.93 -0.37 0.12 16 27 H 0.41 3.63 9.10 45.56 0.41 4.04 16 28 H 0.11 1.37 7.68 -51.93 -0.40 0.97 16 29 H 0.11 1.22 8.00 -51.93 -0.42 0.80 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.11 0.98 8.08 -51.93 -0.42 0.56 16 LS Contribution 260.97 15.07 3.93 3.93 Total: -1.00 -33.07 260.97 -5.04 -38.11 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -3.26 Total: 6.37 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.85 Total: -7.94 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.10 Total: -41.29 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.83 Total: -16.92 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.74 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.07 -5.04 -38.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060084.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.901 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds