Wall clock time and date at job start Sun Mar 29 2020 21:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47403 * 2 1 4 4 C 1.50704 * 109.47014 * 119.99692 * 2 1 3 5 5 H 1.08007 * 120.00062 * 120.00006 * 4 2 1 6 6 C 1.37870 * 120.00091 * 300.00042 * 4 2 1 7 7 N 1.31522 * 120.00045 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00100 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47018 * 89.99987 * 8 6 4 10 10 H 1.48496 * 109.46922 * 209.99815 * 8 6 4 11 11 H 1.48496 * 109.47153 * 329.99988 * 8 6 4 12 12 N 1.46903 * 109.47216 * 239.99473 * 2 1 3 13 13 C 1.46905 * 110.99443 * 85.00554 * 12 2 1 14 14 C 1.53000 * 109.46846 * 184.73582 * 13 12 2 15 15 C 1.50706 * 115.54706 * 279.72064 * 14 13 12 16 16 O 1.20828 * 119.99361 * 140.24978 * 15 14 13 17 17 O 1.34222 * 120.00271 * 320.24948 * 15 14 13 18 18 C 1.53005 * 117.50039 * 65.38838 * 14 13 12 19 19 C 1.53008 * 60.03058 * 107.50510 * 18 14 13 20 20 H 1.08998 * 109.46730 * 60.00143 * 1 2 3 21 21 H 1.09003 * 109.47103 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46914 * 300.00454 * 1 2 3 23 23 H 0.96994 * 120.00029 * 179.97438 * 7 6 4 24 24 H 1.00898 * 111.00073 * 321.04852 * 12 2 1 25 25 H 1.08992 * 109.47516 * 64.73142 * 13 12 2 26 26 H 1.08998 * 109.46722 * 304.72810 * 13 12 2 27 27 H 0.96695 * 117.00248 * 179.97438 * 17 15 14 28 28 H 1.09005 * 117.49889 * 215.00040 * 18 14 13 29 29 H 1.08995 * 117.49670 * 0.02562 * 18 14 13 30 30 H 1.08999 * 117.50047 * 107.49697 * 19 18 14 31 31 H 1.09004 * 117.49675 * 252.52797 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8595 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0197 -0.6926 -1.1994 13 6 2.0826 0.2225 -2.3468 14 6 2.4822 -0.5582 -3.6005 15 6 3.9549 -0.8428 -3.7470 16 8 4.3243 -1.9143 -4.1657 17 8 4.8560 0.0939 -3.4123 18 6 1.5037 -1.6153 -4.1164 19 6 1.6811 -0.3009 -4.8793 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.9032 -0.5279 4.4376 24 1 1.4496 -1.4980 -1.4099 25 1 2.8215 0.9996 -2.1518 26 1 1.1054 0.6805 -2.5002 27 1 5.7890 -0.1349 -3.5232 28 1 1.9251 -2.5165 -4.5618 29 1 0.5750 -1.7541 -3.5629 30 1 2.2193 -0.3374 -5.8264 31 1 0.8695 0.4249 -4.8270 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060084.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:59 Heat of formation + Delta-G solvation = -87.197565 kcal Electronic energy + Delta-G solvation = -14396.453765 eV Core-core repulsion = 11870.807913 eV Total energy + Delta-G solvation = -2525.645852 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.51467 -38.87398 -37.36029 -36.73986 -34.30423 -31.33925 -27.37541 -27.05949 -24.90415 -23.49650 -21.97855 -20.87379 -19.13436 -18.66756 -17.81899 -16.98623 -16.54335 -15.98983 -15.49963 -15.13940 -15.04119 -14.59105 -14.18639 -13.68951 -13.53092 -13.02557 -12.82688 -12.57117 -12.52473 -12.45655 -11.97606 -11.71477 -11.49040 -11.36543 -11.26650 -11.10048 -10.73309 -9.01427 -8.25750 -6.28861 1.13512 1.31241 1.37553 1.47961 2.12107 2.33918 2.66307 3.08481 3.39148 3.64869 3.87221 4.04040 4.23677 4.47851 4.55980 4.60468 4.69292 4.75836 4.80369 4.93227 4.97200 5.04380 5.17001 5.41836 5.60395 5.68108 6.01697 6.69381 6.74163 6.79041 7.02212 7.36330 8.92049 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042094 B = 0.007977 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.014906 B = 3509.366102 C = 3772.295796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.188 3.812 3 H 0.031 0.969 4 C -0.506 4.506 5 H 0.029 0.971 6 C 0.004 3.996 7 N -0.954 5.954 8 Si 0.957 3.043 9 H -0.265 1.265 10 H -0.301 1.301 11 H -0.246 1.246 12 N -0.690 5.690 13 C 0.102 3.898 14 C -0.159 4.159 15 C 0.526 3.474 16 O -0.554 6.554 17 O -0.507 6.507 18 C -0.142 4.142 19 C -0.115 4.115 20 H 0.067 0.933 21 H 0.055 0.945 22 H 0.036 0.964 23 H 0.265 0.735 24 H 0.337 0.663 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.425 0.575 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.335 5.329 -17.282 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.078 3.922 3 H 0.049 0.951 4 C -0.544 4.544 5 H 0.047 0.953 6 C -0.192 4.192 7 N -0.595 5.595 8 Si 0.784 3.216 9 H -0.191 1.191 10 H -0.229 1.229 11 H -0.169 1.169 12 N -0.321 5.321 13 C -0.027 4.027 14 C -0.160 4.160 15 C 0.371 3.629 16 O -0.446 6.446 17 O -0.320 6.320 18 C -0.180 4.180 19 C -0.152 4.152 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.155 0.845 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.286 0.714 28 H 0.119 0.881 29 H 0.138 0.862 30 H 0.130 0.870 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.954 5.239 -17.005 18.037 hybrid contribution -0.209 0.082 0.623 0.662 sum -3.163 5.322 -16.382 17.512 Atomic orbital electron populations 1.22707 0.98969 1.01551 1.00304 1.19398 0.90325 0.94109 0.88334 0.95111 1.21298 1.30232 1.12419 0.90467 0.95276 1.25891 0.97704 1.00327 0.95273 1.70067 1.48140 1.42750 0.98572 0.85736 0.78878 0.79653 0.77318 1.19142 1.22879 1.16948 1.60405 1.58715 1.09725 1.03279 1.21434 1.00504 0.93967 0.86808 1.21039 0.86326 1.09157 0.99520 1.22362 0.89013 0.80463 0.71052 1.90659 1.82040 1.26497 1.45374 1.84480 1.22410 1.45737 1.79369 1.23158 0.98924 0.93843 1.02025 1.23344 1.00371 0.99424 0.92109 0.91427 0.92624 0.94582 0.92649 0.84482 0.91013 0.92405 0.71410 0.88088 0.86242 0.87034 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.82 8.64 71.98 0.62 -6.19 16 2 C 0.19 8.50 2.16 44.17 0.10 8.60 16 3 H 0.03 1.43 6.91 -2.39 -0.02 1.41 16 4 C -0.51 -29.30 9.42 25.60 0.24 -29.05 16 5 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 6 C 0.00 0.25 5.45 84.65 0.46 0.71 16 7 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 8 Si 0.96 44.53 24.37 68.60 1.67 46.20 16 9 H -0.27 -11.62 6.87 99.48 0.68 -10.93 16 10 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 11 H -0.25 -10.39 6.53 99.48 0.65 -9.74 16 12 N -0.69 -27.13 6.26 -495.45 -3.10 -30.23 16 13 C 0.10 3.07 5.37 86.30 0.46 3.53 16 14 C -0.16 -4.14 2.24 -52.90 -0.12 -4.26 16 15 C 0.53 15.93 7.82 71.24 0.56 16.49 16 16 O -0.55 -19.51 17.03 21.96 0.37 -19.14 16 17 O -0.51 -13.29 12.89 -51.34 -0.66 -13.95 16 18 C -0.14 -3.10 9.24 30.60 0.28 -2.82 16 19 C -0.12 -1.99 9.89 30.62 0.30 -1.69 16 20 H 0.07 2.06 7.39 -2.39 -0.02 2.04 16 21 H 0.05 2.12 8.13 -2.39 -0.02 2.10 16 22 H 0.04 1.46 3.27 -2.39 -0.01 1.45 16 23 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 24 H 0.34 12.47 7.79 -89.70 -0.70 11.77 16 25 H 0.07 2.33 7.69 -2.39 -0.02 2.31 16 26 H 0.06 1.47 7.15 -2.39 -0.02 1.45 16 27 H 0.42 7.30 9.10 -74.06 -0.67 6.63 16 28 H 0.10 2.38 7.68 -2.38 -0.02 2.36 16 29 H 0.12 2.31 8.00 -2.39 -0.02 2.29 16 30 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.13 1.68 8.08 -2.39 -0.02 1.66 16 Total: -1.00 -73.45 260.97 1.19 -72.27 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.30 Total: 19.97 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 2.91 Total: -14.68 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -2.80 Total: -90.66 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.29 Total: -33.09 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.67 Total: 46.20 kcal Total: -73.45 1.19 -72.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060084.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.930 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds