Wall clock time and date at job start Sun Mar 29 2020 21:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 115.54990 * 2 1 4 4 C 1.53005 * 117.50022 * 214.28676 * 2 1 3 5 5 C 1.52999 * 60.00146 * 252.51086 * 4 2 1 6 6 H 1.08997 * 117.52232 * 252.52246 * 5 4 2 7 7 C 1.52996 * 117.49806 * 107.48760 * 5 4 2 8 8 N 1.46505 * 109.47112 * 116.38036 * 7 5 4 9 9 C 1.36929 * 120.00028 * 89.99772 * 8 7 5 10 10 H 1.08001 * 119.99890 * 170.78142 * 9 8 7 11 11 C 1.38814 * 120.00354 * 350.78226 * 9 8 7 12 12 N 1.31621 * 119.99995 * 334.77918 * 11 9 8 13 13 Si 1.86803 * 120.00155 * 154.77740 * 11 9 8 14 14 H 1.48505 * 109.46950 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.46990 * 299.99855 * 13 11 9 16 16 H 1.48496 * 109.47180 * 59.99861 * 13 11 9 17 17 C 1.46501 * 120.00047 * 270.00233 * 8 7 5 18 18 C 1.50700 * 109.46852 * 268.84161 * 17 8 7 19 19 O 1.20829 * 120.00226 * 359.97438 * 18 17 8 20 20 O 1.34230 * 119.99966 * 179.97438 * 18 17 8 21 21 H 1.09002 * 109.47179 * 274.33326 * 1 2 3 22 22 H 1.08999 * 109.47527 * 34.33499 * 1 2 3 23 23 H 1.08999 * 109.46869 * 154.33612 * 1 2 3 24 24 H 1.09000 * 117.49662 * 145.02293 * 4 2 1 25 25 H 1.09003 * 117.49885 * 359.97438 * 4 2 1 26 26 H 1.08993 * 109.47292 * 356.37881 * 7 5 4 27 27 H 1.09003 * 109.47345 * 236.37502 * 7 5 4 28 28 H 0.96997 * 120.00294 * 179.97438 * 12 11 9 29 29 H 1.09003 * 109.47092 * 28.83394 * 17 8 7 30 30 H 1.08991 * 109.47201 * 148.83757 * 17 8 7 31 31 H 0.96696 * 117.00216 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1213 -0.7645 5 6 2.2365 -1.1207 0.7655 6 1 3.1712 -0.8745 1.2690 7 6 1.3588 -2.1556 1.4723 8 7 2.2058 -3.0698 2.2425 9 6 2.5169 -2.7817 3.5445 10 1 3.0130 -3.5199 4.1572 11 6 2.1948 -1.5409 4.0770 12 7 2.0646 -0.4983 3.2843 13 14 1.9458 -1.3509 5.9186 14 1 1.6117 0.0622 6.2297 15 1 0.8344 -2.2308 6.3612 16 1 3.1926 -1.7333 6.6287 17 6 2.7199 -4.2921 1.6197 18 6 1.7549 -5.4238 1.8627 19 8 0.7419 -5.2294 2.4919 20 8 2.0207 -6.6478 1.3800 21 1 -0.3633 0.0776 1.0247 22 1 -0.3634 0.8486 -0.5796 23 1 -0.3633 -0.9263 -0.4451 24 1 3.1716 -0.8757 -1.2679 25 1 1.6112 -1.8593 -1.2672 26 1 0.7947 -2.7209 0.7306 27 1 0.6676 -1.6474 2.1446 28 1 1.8391 0.3687 3.6563 29 1 2.8317 -4.1340 0.5470 30 1 3.6885 -4.5410 2.0532 31 1 1.3723 -7.3417 1.5617 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604682504.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:10 Heat of formation + Delta-G solvation = -40.766361 kcal Electronic energy + Delta-G solvation = -14789.358565 eV Core-core repulsion = 12265.726121 eV Total energy + Delta-G solvation = -2523.632444 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.31943 -37.39488 -35.47893 -34.61718 -31.40687 -28.09248 -27.31676 -25.95679 -22.63372 -20.61386 -20.25175 -18.54276 -17.29450 -16.72905 -15.63960 -15.15972 -14.95924 -14.48329 -13.56797 -13.17268 -13.03257 -12.36806 -12.29862 -11.69961 -11.49409 -11.08432 -10.92668 -10.75911 -10.69110 -10.57037 -10.34923 -10.16192 -9.89406 -9.72919 -8.96812 -8.63991 -8.32785 -7.05494 -5.82339 -3.14826 3.10441 3.39166 3.47157 3.52635 3.82208 4.49415 4.86036 5.33717 5.35556 5.66023 5.89098 5.93934 6.07079 6.13147 6.19028 6.32098 6.41936 6.50048 6.59313 6.66555 6.77328 7.05812 7.21057 7.29245 7.44349 7.73869 7.83809 8.22653 8.74410 9.12673 9.74446 10.16501 11.20746 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.016216 C = 0.009445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.594491 B = 1726.259554 C = 2963.784660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.156 4.156 3 H 0.085 0.915 4 C -0.224 4.224 5 C -0.074 4.074 6 H 0.115 0.885 7 C 0.207 3.793 8 N -0.565 5.565 9 C -0.266 4.266 10 H 0.073 0.927 11 C 0.012 3.988 12 N -0.882 5.882 13 Si 0.894 3.106 14 H -0.291 1.291 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.159 3.841 18 C 0.430 3.570 19 O -0.507 6.507 20 O -0.538 6.538 21 H 0.060 0.940 22 H 0.041 0.959 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.012 0.988 27 H 0.082 0.918 28 H 0.255 0.745 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 -3.572 -6.127 7.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.175 4.175 3 H 0.104 0.896 4 C -0.261 4.261 5 C -0.094 4.094 6 H 0.133 0.867 7 C 0.082 3.918 8 N -0.283 5.283 9 C -0.394 4.394 10 H 0.091 0.909 11 C -0.187 4.187 12 N -0.525 5.525 13 Si 0.723 3.277 14 H -0.217 1.217 15 H -0.212 1.212 16 H -0.210 1.210 17 C 0.027 3.973 18 C 0.268 3.732 19 O -0.392 6.392 20 O -0.349 6.349 21 H 0.079 0.921 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.030 0.970 27 H 0.100 0.900 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 0.078 -2.971 -5.957 6.657 hybrid contribution -0.690 -0.286 1.115 1.342 sum -0.612 -3.258 -4.842 5.868 Atomic orbital electron populations 1.21210 0.94327 0.99930 1.01445 1.22002 0.94260 0.94224 1.06968 0.89638 1.23308 1.01508 1.02634 0.98653 1.22951 1.02077 0.96914 0.87443 0.86729 1.20276 0.91068 0.88283 0.92150 1.43879 1.55855 1.17104 1.11464 1.19102 1.36210 0.97998 0.86083 0.90915 1.24701 1.01324 0.94948 0.97733 1.70251 1.50058 0.98724 1.33444 0.86504 0.78473 0.76579 0.86141 1.21670 1.21151 1.21044 1.20369 0.93882 0.83915 0.99135 1.26942 0.88254 0.82898 0.75092 1.90640 1.28048 1.83255 1.37304 1.84701 1.54110 1.21486 1.74585 0.92077 0.93999 0.93572 0.90744 0.90591 0.96999 0.89962 0.93486 0.89787 0.89163 0.75651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 9.19 37.16 0.34 -1.63 16 2 C -0.16 -2.98 6.41 -90.62 -0.58 -3.57 16 3 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 4 C -0.22 -4.07 9.82 -26.73 -0.26 -4.33 16 5 C -0.07 -1.59 4.30 -90.62 -0.39 -1.98 16 6 H 0.11 2.85 7.37 -51.93 -0.38 2.47 16 7 C 0.21 4.87 4.28 -4.04 -0.02 4.85 16 8 N -0.56 -13.69 2.02 -174.61 -0.35 -14.04 16 9 C -0.27 -7.11 9.69 -15.06 -0.15 -7.26 16 10 H 0.07 1.94 7.95 -52.49 -0.42 1.52 16 11 C 0.01 0.32 4.88 -17.43 -0.09 0.23 16 12 N -0.88 -23.60 8.74 55.49 0.49 -23.12 16 13 Si 0.89 21.62 29.62 -169.99 -5.04 16.59 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 C 0.16 3.17 6.26 -5.19 -0.03 3.14 16 18 C 0.43 8.55 8.39 36.01 0.30 8.85 16 19 O -0.51 -12.14 17.19 -18.75 -0.32 -12.47 16 20 O -0.54 -8.39 13.42 -39.26 -0.53 -8.92 16 21 H 0.06 1.17 7.83 -51.93 -0.41 0.76 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.78 7.90 -51.93 -0.41 0.37 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.08 1.32 7.94 -51.93 -0.41 0.91 16 26 H 0.01 0.27 7.80 -51.93 -0.41 -0.14 16 27 H 0.08 2.19 5.99 -51.93 -0.31 1.87 16 28 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 30 H 0.09 1.68 8.05 -51.93 -0.42 1.26 16 31 H 0.39 4.41 9.10 45.56 0.41 4.83 16 LS Contribution 266.27 15.07 4.01 4.01 Total: -1.00 -29.63 266.27 -6.18 -35.81 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.57 Total: 3.83 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.87 Total: -1.69 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.13 Total: -37.16 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.85 Total: -21.38 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.04 Total: 16.59 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.63 -6.18 -35.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604682504.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.959 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds