Wall clock time and date at job start Sun Mar 29 2020 21:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 115.54990 * 2 1 4 4 C 1.53005 * 117.50022 * 214.28676 * 2 1 3 5 5 C 1.52999 * 60.00146 * 252.51086 * 4 2 1 6 6 H 1.08997 * 117.52232 * 252.52246 * 5 4 2 7 7 C 1.52996 * 117.49806 * 107.48760 * 5 4 2 8 8 N 1.46505 * 109.47112 * 116.38036 * 7 5 4 9 9 C 1.36929 * 120.00028 * 89.99772 * 8 7 5 10 10 H 1.08001 * 119.99890 * 170.78142 * 9 8 7 11 11 C 1.38814 * 120.00354 * 350.78226 * 9 8 7 12 12 N 1.31621 * 119.99995 * 334.77918 * 11 9 8 13 13 Si 1.86803 * 120.00155 * 154.77740 * 11 9 8 14 14 H 1.48505 * 109.46950 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.46990 * 299.99855 * 13 11 9 16 16 H 1.48496 * 109.47180 * 59.99861 * 13 11 9 17 17 C 1.46501 * 120.00047 * 270.00233 * 8 7 5 18 18 C 1.50700 * 109.46852 * 268.84161 * 17 8 7 19 19 O 1.20829 * 120.00226 * 359.97438 * 18 17 8 20 20 O 1.34230 * 119.99966 * 179.97438 * 18 17 8 21 21 H 1.09002 * 109.47179 * 274.33326 * 1 2 3 22 22 H 1.08999 * 109.47527 * 34.33499 * 1 2 3 23 23 H 1.08999 * 109.46869 * 154.33612 * 1 2 3 24 24 H 1.09000 * 117.49662 * 145.02293 * 4 2 1 25 25 H 1.09003 * 117.49885 * 359.97438 * 4 2 1 26 26 H 1.08993 * 109.47292 * 356.37881 * 7 5 4 27 27 H 1.09003 * 109.47345 * 236.37502 * 7 5 4 28 28 H 0.96997 * 120.00294 * 179.97438 * 12 11 9 29 29 H 1.09003 * 109.47092 * 28.83394 * 17 8 7 30 30 H 1.08991 * 109.47201 * 148.83757 * 17 8 7 31 31 H 0.96696 * 117.00216 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1213 -0.7645 5 6 2.2365 -1.1207 0.7655 6 1 3.1712 -0.8745 1.2690 7 6 1.3588 -2.1556 1.4723 8 7 2.2058 -3.0698 2.2425 9 6 2.5169 -2.7817 3.5445 10 1 3.0130 -3.5199 4.1572 11 6 2.1948 -1.5409 4.0770 12 7 2.0646 -0.4983 3.2843 13 14 1.9458 -1.3509 5.9186 14 1 1.6117 0.0622 6.2297 15 1 0.8344 -2.2308 6.3612 16 1 3.1926 -1.7333 6.6287 17 6 2.7199 -4.2921 1.6197 18 6 1.7549 -5.4238 1.8627 19 8 0.7419 -5.2294 2.4919 20 8 2.0207 -6.6478 1.3800 21 1 -0.3633 0.0776 1.0247 22 1 -0.3634 0.8486 -0.5796 23 1 -0.3633 -0.9263 -0.4451 24 1 3.1716 -0.8757 -1.2679 25 1 1.6112 -1.8593 -1.2672 26 1 0.7947 -2.7209 0.7306 27 1 0.6676 -1.6474 2.1446 28 1 1.8391 0.3687 3.6563 29 1 2.8317 -4.1340 0.5470 30 1 3.6885 -4.5410 2.0532 31 1 1.3723 -7.3417 1.5617 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604682504.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:10 Heat of formation + Delta-G solvation = -58.831618 kcal Electronic energy + Delta-G solvation = -14790.141934 eV Core-core repulsion = 12265.726121 eV Total energy + Delta-G solvation = -2524.415813 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.90128 -39.02359 -37.01398 -36.34073 -33.33426 -29.66686 -28.92824 -27.81201 -24.42155 -22.13489 -21.87075 -20.21674 -18.82413 -18.60664 -17.25717 -16.86701 -16.59312 -16.22035 -15.45162 -14.83739 -14.67255 -13.86208 -13.82245 -13.34009 -13.21934 -12.87942 -12.64498 -12.43607 -12.28757 -12.23462 -12.02721 -11.99926 -11.86493 -11.39768 -10.70326 -10.32726 -10.06150 -8.94155 -7.82407 -5.15429 1.44641 1.50728 1.52759 1.56086 2.32744 2.58779 3.28520 3.33964 3.60379 4.17784 4.36677 4.40796 4.56010 4.65265 4.69276 4.77430 4.84212 5.04785 5.08907 5.13783 5.32963 5.50477 5.56161 5.64599 5.76881 5.84170 6.02236 6.28693 7.14354 7.29669 7.83841 8.21786 9.17339 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.016216 C = 0.009445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.594491 B = 1726.259554 C = 2963.784660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.157 4.157 3 H 0.086 0.914 4 C -0.191 4.191 5 C -0.094 4.094 6 H 0.079 0.921 7 C 0.220 3.780 8 N -0.584 5.584 9 C -0.276 4.276 10 H 0.067 0.933 11 C -0.030 4.030 12 N -0.890 5.890 13 Si 0.942 3.058 14 H -0.291 1.291 15 H -0.297 1.297 16 H -0.277 1.277 17 C 0.154 3.846 18 C 0.444 3.556 19 O -0.553 6.553 20 O -0.519 6.519 21 H 0.037 0.963 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.019 0.981 27 H 0.042 0.958 28 H 0.248 0.752 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 -4.346 -7.565 8.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.176 4.176 3 H 0.104 0.896 4 C -0.228 4.228 5 C -0.115 4.115 6 H 0.097 0.903 7 C 0.095 3.905 8 N -0.303 5.303 9 C -0.405 4.405 10 H 0.085 0.915 11 C -0.228 4.228 12 N -0.534 5.534 13 Si 0.772 3.228 14 H -0.217 1.217 15 H -0.225 1.225 16 H -0.203 1.203 17 C 0.023 3.977 18 C 0.284 3.716 19 O -0.443 6.443 20 O -0.331 6.331 21 H 0.056 0.944 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 0.384 -3.793 -7.420 8.342 hybrid contribution -0.748 -0.184 1.501 1.687 sum -0.364 -3.977 -5.918 7.140 Atomic orbital electron populations 1.21164 0.93229 1.01460 1.00529 1.22116 0.95213 0.94085 1.06161 0.89607 1.23318 1.02101 1.01614 0.95789 1.22496 1.00873 0.98484 0.89634 0.90280 1.20018 0.90748 0.88378 0.91338 1.43976 1.56392 1.18909 1.11048 1.19260 1.35996 0.97696 0.87527 0.91508 1.25234 1.02104 0.95147 1.00312 1.70385 1.50647 0.98416 1.33931 0.85737 0.77955 0.75939 0.83204 1.21749 1.22472 1.20278 1.20594 0.94059 0.82467 1.00548 1.26473 0.87072 0.83985 0.74064 1.90642 1.29901 1.84230 1.39538 1.84591 1.54503 1.20647 1.73366 0.94412 0.91360 0.92928 0.88989 0.89051 0.96263 0.93942 0.94232 0.87052 0.87808 0.72825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.62 9.19 71.98 0.66 -2.95 16 2 C -0.16 -5.81 6.41 -10.79 -0.07 -5.88 16 3 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 4 C -0.19 -6.44 9.82 30.60 0.30 -6.14 16 5 C -0.09 -4.05 4.30 -10.79 -0.05 -4.10 16 6 H 0.08 3.99 7.37 -2.39 -0.02 3.97 16 7 C 0.22 10.37 4.28 86.38 0.37 10.74 16 8 N -0.58 -28.26 2.02 -706.35 -1.43 -29.69 16 9 C -0.28 -14.91 9.69 84.04 0.81 -14.10 16 10 H 0.07 3.59 7.95 -2.91 -0.02 3.57 16 11 C -0.03 -1.66 4.88 84.86 0.41 -1.25 16 12 N -0.89 -48.80 8.74 21.65 0.19 -48.62 16 13 Si 0.94 45.25 29.62 68.60 2.03 47.28 16 14 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 15 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 C 0.15 5.86 6.26 85.63 0.54 6.40 16 18 C 0.44 16.79 8.39 71.24 0.60 17.39 16 19 O -0.55 -26.13 17.19 21.96 0.38 -25.75 16 20 O -0.52 -14.49 13.42 -51.42 -0.69 -15.18 16 21 H 0.04 1.44 7.83 -2.39 -0.02 1.42 16 22 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 23 H 0.05 1.68 7.90 -2.39 -0.02 1.66 16 24 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 25 H 0.09 2.82 7.94 -2.39 -0.02 2.81 16 26 H 0.02 0.85 7.80 -2.39 -0.02 0.83 16 27 H 0.04 2.32 5.99 -2.39 -0.01 2.30 16 28 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 29 H 0.11 3.61 8.06 -2.39 -0.02 3.59 16 30 H 0.10 3.66 8.05 -2.39 -0.02 3.64 16 31 H 0.41 7.95 9.10 -74.06 -0.67 7.28 16 Total: -1.00 -64.11 266.27 4.51 -59.60 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.45 Total: 12.23 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 3.58 Total: 0.12 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.24 Total: -78.30 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.31 Total: -40.93 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -64.11 4.51 -59.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604682504.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.769 kcal (2) G-P(sol) polarization free energy of solvation -64.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds