Wall clock time and date at job start Sun Mar 29 2020 21:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 115.54783 * 2 1 4 4 C 1.53068 * 117.53353 * 145.71808 * 2 1 3 5 5 C 1.52991 * 59.98473 * 107.46935 * 4 2 1 6 6 H 1.09001 * 117.50209 * 107.49878 * 5 4 2 7 7 C 1.52998 * 117.50078 * 252.49668 * 5 4 2 8 8 N 1.46494 * 109.47392 * 243.74748 * 7 5 4 9 9 C 1.36939 * 119.99898 * 89.99884 * 8 7 5 10 10 H 1.07996 * 119.99815 * 343.71446 * 9 8 7 11 11 C 1.38811 * 119.99929 * 163.71435 * 9 8 7 12 12 N 1.31620 * 120.00124 * 338.69899 * 11 9 8 13 13 Si 1.86797 * 119.99853 * 158.69600 * 11 9 8 14 14 H 1.48498 * 109.47214 * 270.00252 * 13 11 9 15 15 H 1.48501 * 109.47203 * 30.00310 * 13 11 9 16 16 H 1.48502 * 109.47221 * 150.00166 * 13 11 9 17 17 C 1.46493 * 120.00156 * 269.99613 * 8 7 5 18 18 C 1.50693 * 109.47633 * 276.05401 * 17 8 7 19 19 O 1.20830 * 120.00018 * 0.02562 * 18 17 8 20 20 O 1.34228 * 120.00708 * 179.97438 * 18 17 8 21 21 H 1.09001 * 109.46992 * 205.66575 * 1 2 3 22 22 H 1.09003 * 109.47256 * 325.66957 * 1 2 3 23 23 H 1.08997 * 109.47133 * 85.66713 * 1 2 3 24 24 H 1.08995 * 117.51330 * 359.97438 * 4 2 1 25 25 H 1.09004 * 117.48991 * 214.95867 * 4 2 1 26 26 H 1.09001 * 109.46940 * 123.74326 * 7 5 4 27 27 H 1.09002 * 109.46721 * 3.74795 * 7 5 4 28 28 H 0.96998 * 119.99703 * 179.97438 * 12 11 9 29 29 H 1.09002 * 109.47462 * 36.05703 * 17 8 7 30 30 H 1.09000 * 109.47327 * 156.05456 * 17 8 7 31 31 H 0.96695 * 117.00520 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2376 -1.1215 0.7645 5 6 2.2365 -1.1206 -0.7654 6 1 3.1711 -0.8744 -1.2693 7 6 1.3589 -2.1559 -1.4718 8 7 2.2060 -3.0712 -2.2404 9 6 2.6855 -4.2134 -1.6566 10 1 2.6699 -4.3180 -0.5818 11 6 3.1917 -5.2366 -2.4463 12 7 2.8487 -5.3205 -3.7142 13 14 4.3597 -6.4945 -1.7095 14 1 5.7586 -6.0202 -1.8623 15 1 4.0516 -6.6710 -0.2675 16 1 4.1974 -7.7923 -2.4127 17 6 2.5400 -2.7648 -3.6334 18 6 1.4259 -3.2354 -4.5324 19 8 0.4524 -3.7713 -4.0581 20 8 1.5144 -3.0583 -5.8600 21 1 -0.3633 -0.9263 0.4451 22 1 -0.3634 0.8487 0.5796 23 1 -0.3633 0.0776 -1.0247 24 1 1.6132 -1.8594 1.2681 25 1 3.1729 -0.8754 1.2673 26 1 0.6684 -1.6480 -2.1451 27 1 0.7940 -2.7202 -0.7298 28 1 3.2027 -6.0354 -4.2661 29 1 2.6692 -1.6886 -3.7478 30 1 3.4653 -3.2727 -3.9054 31 1 0.7749 -3.3763 -6.3956 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604682511.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:19 Heat of formation + Delta-G solvation = -49.035369 kcal Electronic energy + Delta-G solvation = -14726.406399 eV Core-core repulsion = 12202.415383 eV Total energy + Delta-G solvation = -2523.991015 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.71559 -37.70043 -35.27414 -34.25666 -31.23007 -28.37090 -27.47880 -26.01008 -22.47406 -21.08256 -20.08712 -18.78287 -16.84846 -16.64129 -15.60308 -15.04006 -14.71619 -14.10566 -13.60649 -13.43974 -13.27248 -12.61705 -12.15597 -11.84847 -11.42408 -11.19380 -10.99602 -10.92447 -10.80871 -10.61885 -10.18809 -9.99294 -9.96201 -9.47913 -9.21236 -9.06318 -8.52602 -7.01640 -5.89252 -3.21877 3.37554 3.44333 3.46245 3.92094 4.21188 4.41074 4.58727 5.14968 5.19671 5.38939 5.42556 5.56060 5.67674 6.08417 6.12372 6.14652 6.28820 6.33634 6.39457 6.52574 6.62186 6.65797 6.94498 7.03166 7.10117 7.74071 7.88102 8.23210 9.06503 9.45958 9.75339 10.18321 11.22225 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.012443 C = 0.008792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.732524 B = 2249.647679 C = 3183.970052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.169 4.169 3 H 0.093 0.907 4 C -0.176 4.176 5 C -0.148 4.148 6 H 0.099 0.901 7 C 0.179 3.821 8 N -0.566 5.566 9 C -0.249 4.249 10 H 0.080 0.920 11 C -0.003 4.003 12 N -0.907 5.907 13 Si 0.910 3.090 14 H -0.287 1.287 15 H -0.280 1.280 16 H -0.293 1.293 17 C 0.189 3.811 18 C 0.477 3.523 19 O -0.518 6.518 20 O -0.544 6.544 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.256 0.744 29 H 0.051 0.949 30 H 0.114 0.886 31 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 8.581 2.294 8.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.188 4.188 3 H 0.111 0.889 4 C -0.213 4.213 5 C -0.169 4.169 6 H 0.118 0.882 7 C 0.052 3.948 8 N -0.285 5.285 9 C -0.378 4.378 10 H 0.098 0.902 11 C -0.200 4.200 12 N -0.553 5.553 13 Si 0.740 3.260 14 H -0.214 1.214 15 H -0.205 1.205 16 H -0.219 1.219 17 C 0.059 3.941 18 C 0.317 3.683 19 O -0.404 6.404 20 O -0.354 6.354 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.108 0.892 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.132 0.868 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.948 8.415 2.597 8.858 hybrid contribution 0.087 -1.154 -0.094 1.161 sum -0.861 7.261 2.503 7.729 Atomic orbital electron populations 1.21285 0.93447 1.01322 1.01528 1.22335 0.95049 0.94177 1.07189 0.88856 1.23032 1.01653 1.00976 0.95608 1.23341 1.01458 0.98630 0.93438 0.88234 1.20353 0.90481 0.89842 0.94128 1.43928 1.55631 1.22502 1.06474 1.19309 1.33383 0.93433 0.91645 0.90229 1.24849 1.01384 0.97556 0.96214 1.69857 1.44446 1.34136 1.06847 0.86147 0.81173 0.80256 0.78383 1.21395 1.20489 1.21945 1.20259 0.95130 0.96314 0.82376 1.25401 0.88389 0.74931 0.79565 1.90502 1.34119 1.40095 1.75726 1.84639 1.50330 1.78060 1.22414 0.92536 0.93066 0.92384 0.89247 0.89841 0.93956 0.92987 0.93319 0.93134 0.86810 0.76497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 9.20 37.16 0.34 -1.24 16 2 C -0.17 -2.45 6.41 -90.59 -0.58 -3.03 16 3 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 4 C -0.18 -2.75 9.83 -26.70 -0.26 -3.01 16 5 C -0.15 -2.60 6.01 -90.63 -0.54 -3.15 16 6 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 7 C 0.18 3.74 5.00 -4.05 -0.02 3.72 16 8 N -0.57 -13.96 2.03 -174.62 -0.35 -14.32 16 9 C -0.25 -6.73 9.67 -15.06 -0.15 -6.87 16 10 H 0.08 2.12 7.92 -52.49 -0.42 1.71 16 11 C 0.00 -0.07 4.88 -17.43 -0.09 -0.16 16 12 N -0.91 -26.01 9.28 55.49 0.51 -25.49 16 13 Si 0.91 21.76 29.60 -169.99 -5.03 16.72 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 C 0.19 4.46 5.48 -5.20 -0.03 4.43 16 18 C 0.48 11.69 6.54 36.00 0.24 11.93 16 19 O -0.52 -14.47 16.91 -18.75 -0.32 -14.79 16 20 O -0.54 -11.25 13.42 -39.25 -0.53 -11.78 16 21 H 0.06 0.78 7.90 -51.93 -0.41 0.37 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.78 7.84 -51.93 -0.41 0.38 16 24 H 0.09 1.42 7.94 -51.93 -0.41 1.01 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.04 0.88 7.70 -51.93 -0.40 0.48 16 27 H 0.05 1.13 7.77 -51.93 -0.40 0.73 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.05 1.03 8.12 -51.93 -0.42 0.60 16 30 H 0.11 2.89 6.33 -51.93 -0.33 2.57 16 31 H 0.38 6.26 9.10 45.56 0.41 6.67 16 LS Contribution 267.08 15.07 4.02 4.02 Total: -1.00 -31.41 267.08 -6.39 -37.80 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -3.61 Total: 5.20 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.09 Total: 2.62 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.16 Total: -39.81 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.84 Total: -26.56 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.41 -6.39 -37.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604682511.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.231 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds