Wall clock time and date at job start Sun Mar 29 2020 21:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 115.54783 * 2 1 4 4 C 1.53068 * 117.53353 * 145.71808 * 2 1 3 5 5 C 1.52991 * 59.98473 * 107.46935 * 4 2 1 6 6 H 1.09001 * 117.50209 * 107.49878 * 5 4 2 7 7 C 1.52998 * 117.50078 * 252.49668 * 5 4 2 8 8 N 1.46494 * 109.47392 * 243.74748 * 7 5 4 9 9 C 1.36939 * 119.99898 * 89.99884 * 8 7 5 10 10 H 1.07996 * 119.99815 * 343.71446 * 9 8 7 11 11 C 1.38811 * 119.99929 * 163.71435 * 9 8 7 12 12 N 1.31620 * 120.00124 * 338.69899 * 11 9 8 13 13 Si 1.86797 * 119.99853 * 158.69600 * 11 9 8 14 14 H 1.48498 * 109.47214 * 270.00252 * 13 11 9 15 15 H 1.48501 * 109.47203 * 30.00310 * 13 11 9 16 16 H 1.48502 * 109.47221 * 150.00166 * 13 11 9 17 17 C 1.46493 * 120.00156 * 269.99613 * 8 7 5 18 18 C 1.50693 * 109.47633 * 276.05401 * 17 8 7 19 19 O 1.20830 * 120.00018 * 0.02562 * 18 17 8 20 20 O 1.34228 * 120.00708 * 179.97438 * 18 17 8 21 21 H 1.09001 * 109.46992 * 205.66575 * 1 2 3 22 22 H 1.09003 * 109.47256 * 325.66957 * 1 2 3 23 23 H 1.08997 * 109.47133 * 85.66713 * 1 2 3 24 24 H 1.08995 * 117.51330 * 359.97438 * 4 2 1 25 25 H 1.09004 * 117.48991 * 214.95867 * 4 2 1 26 26 H 1.09001 * 109.46940 * 123.74326 * 7 5 4 27 27 H 1.09002 * 109.46721 * 3.74795 * 7 5 4 28 28 H 0.96998 * 119.99703 * 179.97438 * 12 11 9 29 29 H 1.09002 * 109.47462 * 36.05703 * 17 8 7 30 30 H 1.09000 * 109.47327 * 156.05456 * 17 8 7 31 31 H 0.96695 * 117.00520 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2376 -1.1215 0.7645 5 6 2.2365 -1.1206 -0.7654 6 1 3.1711 -0.8744 -1.2693 7 6 1.3589 -2.1559 -1.4718 8 7 2.2060 -3.0712 -2.2404 9 6 2.6855 -4.2134 -1.6566 10 1 2.6699 -4.3180 -0.5818 11 6 3.1917 -5.2366 -2.4463 12 7 2.8487 -5.3205 -3.7142 13 14 4.3597 -6.4945 -1.7095 14 1 5.7586 -6.0202 -1.8623 15 1 4.0516 -6.6710 -0.2675 16 1 4.1974 -7.7923 -2.4127 17 6 2.5400 -2.7648 -3.6334 18 6 1.4259 -3.2354 -4.5324 19 8 0.4524 -3.7713 -4.0581 20 8 1.5144 -3.0583 -5.8600 21 1 -0.3633 -0.9263 0.4451 22 1 -0.3634 0.8487 0.5796 23 1 -0.3633 0.0776 -1.0247 24 1 1.6132 -1.8594 1.2681 25 1 3.1729 -0.8754 1.2673 26 1 0.6684 -1.6480 -2.1451 27 1 0.7940 -2.7202 -0.7298 28 1 3.2027 -6.0354 -4.2661 29 1 2.6692 -1.6886 -3.7478 30 1 3.4653 -3.2727 -3.9054 31 1 0.7749 -3.3763 -6.3956 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604682511.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:18 Heat of formation + Delta-G solvation = -68.518267 kcal Electronic energy + Delta-G solvation = -14727.251241 eV Core-core repulsion = 12202.415383 eV Total energy + Delta-G solvation = -2524.835857 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.59738 -39.10556 -37.04138 -36.17096 -33.20776 -29.80069 -29.05149 -27.84196 -24.34781 -22.50364 -21.77074 -20.20603 -18.78108 -18.51269 -17.33066 -16.88762 -16.28905 -16.01275 -15.37953 -15.08995 -14.80748 -13.86533 -13.67210 -13.52422 -13.17099 -12.84565 -12.68741 -12.48380 -12.34899 -12.17864 -12.08412 -11.97207 -11.88283 -11.18715 -10.69998 -10.58941 -10.41850 -8.96223 -7.95628 -5.29141 1.48265 1.49560 1.58128 1.99563 2.47261 2.76012 3.00245 3.25493 3.59922 3.94369 4.11924 4.20575 4.53088 4.62419 4.66941 4.85986 4.96651 5.02091 5.02624 5.07555 5.18392 5.25275 5.29475 5.49393 5.55326 5.63871 6.12542 6.23888 7.03836 7.59096 7.81069 8.18287 9.13725 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.012443 C = 0.008792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.732524 B = 2249.647679 C = 3183.970052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.142 4.142 3 H 0.117 0.883 4 C -0.175 4.175 5 C -0.169 4.169 6 H 0.095 0.905 7 C 0.184 3.816 8 N -0.581 5.581 9 C -0.254 4.254 10 H 0.077 0.923 11 C -0.053 4.053 12 N -0.933 5.933 13 Si 0.972 3.028 14 H -0.280 1.280 15 H -0.273 1.273 16 H -0.302 1.302 17 C 0.188 3.812 18 C 0.481 3.519 19 O -0.560 6.560 20 O -0.533 6.533 21 H 0.046 0.954 22 H 0.077 0.923 23 H 0.054 0.946 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.250 0.750 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 9.899 3.008 10.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 H 0.135 0.865 4 C -0.212 4.212 5 C -0.189 4.189 6 H 0.113 0.887 7 C 0.059 3.941 8 N -0.301 5.301 9 C -0.384 4.384 10 H 0.095 0.905 11 C -0.247 4.247 12 N -0.580 5.580 13 Si 0.801 3.199 14 H -0.207 1.207 15 H -0.198 1.198 16 H -0.229 1.229 17 C 0.058 3.942 18 C 0.323 3.677 19 O -0.449 6.449 20 O -0.344 6.344 21 H 0.065 0.935 22 H 0.096 0.904 23 H 0.073 0.927 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -0.563 9.770 3.308 10.330 hybrid contribution -0.094 -1.510 -0.356 1.554 sum -0.657 8.260 2.953 8.796 Atomic orbital electron populations 1.21337 0.92677 1.02037 1.01781 1.22470 0.95620 0.94246 1.03749 0.86484 1.23100 1.02537 1.01536 0.94042 1.23013 1.01435 0.99992 0.94455 0.88658 1.20348 0.90611 0.89702 0.93444 1.44128 1.56306 1.22474 1.07182 1.19539 1.32985 0.94173 0.91715 0.90543 1.25553 1.02894 0.99552 0.96737 1.70003 1.45508 1.34652 1.07854 0.85181 0.79431 0.77568 0.77707 1.20657 1.19811 1.22920 1.20296 0.93974 0.97957 0.81963 1.25511 0.87778 0.73883 0.80523 1.90481 1.35701 1.42026 1.76713 1.84557 1.51229 1.77572 1.21072 0.93520 0.90409 0.92682 0.89899 0.88366 0.94185 0.94712 0.94099 0.89719 0.88728 0.74096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 9.20 71.98 0.66 -2.28 16 2 C -0.14 -3.73 6.41 -10.77 -0.07 -3.80 16 3 H 0.12 2.58 8.14 -2.38 -0.02 2.56 16 4 C -0.18 -5.14 9.83 30.61 0.30 -4.84 16 5 C -0.17 -5.69 6.01 -10.80 -0.06 -5.76 16 6 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 7 C 0.18 7.69 5.00 86.38 0.43 8.12 16 8 N -0.58 -28.71 2.03 -706.39 -1.44 -30.15 16 9 C -0.25 -13.83 9.67 84.03 0.81 -13.02 16 10 H 0.08 4.10 7.92 -2.91 -0.02 4.07 16 11 C -0.05 -2.92 4.88 84.86 0.41 -2.50 16 12 N -0.93 -54.02 9.28 21.65 0.20 -53.82 16 13 Si 0.97 44.99 29.60 68.60 2.03 47.02 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 17 C 0.19 8.81 5.48 85.63 0.47 9.28 16 18 C 0.48 23.45 6.54 71.23 0.47 23.91 16 19 O -0.56 -31.48 16.91 21.95 0.37 -31.11 16 20 O -0.53 -21.40 13.42 -51.39 -0.69 -22.09 16 21 H 0.05 1.22 7.90 -2.39 -0.02 1.20 16 22 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.05 1.38 7.84 -2.39 -0.02 1.36 16 24 H 0.08 2.54 7.94 -2.39 -0.02 2.52 16 25 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.04 1.65 7.70 -2.39 -0.02 1.63 16 27 H 0.03 1.53 7.77 -2.39 -0.02 1.51 16 28 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.09 3.33 8.12 -2.39 -0.02 3.31 16 30 H 0.09 4.84 6.33 -2.39 -0.02 4.82 16 31 H 0.40 12.62 9.10 -74.06 -0.67 11.94 16 Total: -1.00 -66.60 267.08 4.35 -62.25 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.45 Total: 18.77 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 3.42 Total: 9.12 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -1.23 Total: -83.97 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -0.32 Total: -53.19 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.60 4.35 -62.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604682511.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.267 kcal (2) G-P(sol) polarization free energy of solvation -66.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds