Wall clock time and date at job start Sun Mar 29 2020 22:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46985 * 2 1 4 4 C 1.52999 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47355 * 305.00462 * 4 3 2 6 6 C 1.52997 * 109.47369 * 185.00198 * 4 3 2 7 7 N 1.46901 * 109.47407 * 65.00145 * 4 3 2 8 8 C 1.47952 * 111.00471 * 182.73465 * 7 4 3 9 9 C 1.53938 * 86.18471 * 222.41793 * 8 7 4 10 10 O 1.42899 * 113.73245 * 269.26015 * 9 8 7 11 11 C 1.50696 * 113.73276 * 138.07833 * 9 8 7 12 12 H 1.07998 * 120.00087 * 4.95777 * 11 9 8 13 13 C 1.37872 * 120.00115 * 184.95954 * 11 9 8 14 14 N 1.31521 * 119.99694 * 12.70072 * 13 11 9 15 15 Si 1.86794 * 120.00523 * 192.70693 * 13 11 9 16 16 H 1.48500 * 109.47437 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46928 * 299.99881 * 15 13 11 18 18 H 1.48508 * 109.46917 * 59.99576 * 15 13 11 19 19 C 1.47964 * 110.99847 * 83.37595 * 7 4 3 20 20 H 1.09001 * 109.46791 * 299.99978 * 1 2 3 21 21 H 1.09007 * 109.47373 * 59.99684 * 1 2 3 22 22 H 1.08999 * 109.47221 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47222 * 240.00333 * 2 1 3 24 24 H 1.08997 * 109.47339 * 120.00388 * 2 1 3 25 25 H 1.09001 * 109.47338 * 60.00357 * 3 2 1 26 26 H 1.08998 * 109.47822 * 300.00027 * 3 2 1 27 27 H 1.08994 * 109.47617 * 190.45438 * 6 4 3 28 28 H 1.08999 * 109.47243 * 310.45674 * 6 4 3 29 29 H 1.09007 * 109.47195 * 70.45435 * 6 4 3 30 30 H 1.09006 * 113.75731 * 108.10282 * 8 7 4 31 31 H 1.09001 * 113.75920 * 336.74281 * 8 7 4 32 32 H 0.96695 * 113.99534 * 172.02513 * 10 9 8 33 33 H 0.97004 * 119.99863 * 5.77936 * 14 13 11 34 34 H 1.08997 * 113.76104 * 23.26461 * 19 7 4 35 35 H 1.09005 * 113.75872 * 251.90526 * 19 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 6 4.0799 2.8795 0.1264 7 7 4.0602 0.8570 -1.2543 8 6 5.5377 0.7804 -1.2621 9 6 5.4528 1.2690 -2.7194 10 8 5.3714 0.2113 -3.6768 11 6 6.4897 2.3035 -3.0737 12 1 7.2502 2.5737 -2.3559 13 6 6.4677 2.9051 -4.3140 14 7 5.4151 2.7712 -5.0911 15 14 7.9327 3.9101 -4.8909 16 1 7.6613 4.4464 -6.2488 17 1 8.1619 5.0361 -3.9502 18 1 9.1400 3.0463 -4.9325 19 6 4.0872 1.8668 -2.3355 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.6767 1.9564 0.8900 26 1 1.6767 1.9564 -0.8899 27 1 5.1539 2.9014 -0.0584 28 1 3.5727 3.5103 -0.6036 29 1 3.8765 3.2507 1.1310 30 1 5.9254 -0.2333 -1.1607 31 1 6.0179 1.4899 -0.5882 32 1 5.1959 0.5105 -4.5794 33 1 4.6221 2.3211 -4.7603 34 1 4.1430 2.8941 -1.9757 35 1 3.3158 1.7212 -3.0918 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653387776.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:45 Heat of formation + Delta-G solvation = -27.737823 kcal Electronic energy + Delta-G solvation = -15162.700324 eV Core-core repulsion = 12775.465934 eV Total energy + Delta-G solvation = -2387.234390 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.72749 -35.88486 -33.91615 -32.17880 -30.99472 -26.84973 -26.27340 -25.34253 -23.76156 -21.30565 -19.96732 -18.31753 -17.74787 -15.91361 -15.00902 -14.54118 -14.44642 -13.89345 -13.72600 -13.32710 -12.91886 -12.70538 -12.51504 -11.95715 -11.47224 -11.38204 -11.19302 -10.98217 -10.73843 -10.61195 -10.50159 -10.36662 -10.18819 -10.08295 -10.07787 -9.06936 -8.65509 -8.23342 -7.68656 -6.52826 -4.30924 3.35638 3.39583 3.57573 4.40109 4.73115 4.98065 5.03474 5.27885 5.32754 5.49522 5.60413 5.67179 5.82510 5.84079 5.87949 6.00530 6.06413 6.09572 6.13220 6.23974 6.26978 6.48158 6.56828 6.62002 6.62606 6.72790 6.82073 7.16836 7.19116 7.87607 7.94243 8.22407 8.61507 9.09990 9.39905 10.78633 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.047515 B = 0.008125 C = 0.007818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.150433 B = 3445.490006 C = 3580.649191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.101 4.101 4 C 0.042 3.958 5 H 0.070 0.930 6 C -0.184 4.184 7 N -0.470 5.470 8 C 0.014 3.986 9 C 0.222 3.778 10 O -0.567 6.567 11 C -0.617 4.617 12 H 0.057 0.943 13 C 0.034 3.966 14 N -0.903 5.903 15 Si 1.064 2.936 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.285 1.285 19 C -0.032 4.032 20 H 0.047 0.953 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.076 0.924 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.370 0.630 33 H 0.270 0.730 34 H 0.079 0.921 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.058 -0.828 8.351 9.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.139 4.139 4 C -0.067 4.067 5 H 0.088 0.912 6 C -0.242 4.242 7 N -0.193 5.193 8 C -0.114 4.114 9 C 0.181 3.819 10 O -0.373 6.373 11 C -0.655 4.655 12 H 0.075 0.925 13 C -0.171 4.171 14 N -0.540 5.540 15 Si 0.891 3.109 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.212 1.212 19 C -0.161 4.161 20 H 0.066 0.934 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.094 0.906 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.219 0.781 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.763 -0.963 7.543 8.973 hybrid contribution -0.334 0.361 1.162 1.262 sum -5.097 -0.603 8.705 10.106 Atomic orbital electron populations 1.21790 0.96822 1.01004 1.01196 1.21423 0.94452 0.97059 1.02570 1.21505 0.94412 0.96965 1.01038 1.22127 0.95498 0.93893 0.95220 0.91197 1.22488 1.02574 0.98161 1.01020 1.68683 1.11643 1.35695 1.03231 1.24033 0.88991 1.00618 0.97779 1.20029 0.90919 0.85128 0.85785 1.86227 1.94803 1.35636 1.20683 1.22351 1.15625 1.23827 1.03700 0.92477 1.25896 1.01673 0.96357 0.93199 1.70890 1.03396 1.40700 1.38999 0.83634 0.74899 0.75930 0.76413 1.20610 1.21355 1.21162 1.25037 1.01287 0.95599 0.94156 0.93424 0.92986 0.93205 0.90572 0.92897 0.92721 0.92197 0.91457 0.91856 0.93153 0.90921 0.91153 0.78136 0.91778 0.90268 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.68 5.82 -26.73 -0.16 -1.84 16 3 C -0.10 -1.53 4.78 -26.73 -0.13 -1.65 16 4 C 0.04 0.72 2.40 -67.71 -0.16 0.55 16 5 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 6 C -0.18 -3.04 7.79 37.16 0.29 -2.76 16 7 N -0.47 -9.66 5.64 -230.23 -1.30 -10.96 16 8 C 0.01 0.32 7.13 -2.77 -0.02 0.30 16 9 C 0.22 5.59 1.08 -90.84 -0.10 5.50 16 10 O -0.57 -15.02 13.46 -35.23 -0.47 -15.49 16 11 C -0.62 -16.73 8.57 -34.44 -0.30 -17.02 16 12 H 0.06 1.54 7.85 -52.49 -0.41 1.13 16 13 C 0.03 0.92 5.27 -17.82 -0.09 0.83 16 14 N -0.90 -25.35 12.81 55.43 0.71 -24.64 16 15 Si 1.06 24.05 29.92 -169.99 -5.09 18.97 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 19 C -0.03 -0.72 5.86 -2.76 -0.02 -0.74 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.08 1.27 7.75 -51.93 -0.40 0.86 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.97 7.93 -51.93 -0.41 0.56 16 27 H 0.07 1.22 5.95 -51.93 -0.31 0.91 16 28 H 0.06 1.09 6.43 -51.93 -0.33 0.76 16 29 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 31 H 0.07 1.48 5.98 -51.93 -0.31 1.17 16 32 H 0.37 9.69 6.87 45.56 0.31 10.01 16 33 H 0.27 7.49 5.48 -40.82 -0.22 7.26 16 34 H 0.08 1.81 4.93 -51.93 -0.26 1.55 16 35 H 0.06 1.50 7.81 -51.93 -0.41 1.10 16 LS Contribution 273.86 15.07 4.13 4.13 Total: -1.00 -28.19 273.86 -7.26 -35.45 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -4.93 Total: 10.84 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -0.31 Total: -18.29 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.59 Total: -35.60 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.47 Total: -15.49 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.09 Total: 18.97 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.19 -7.26 -35.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653387776.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.713 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds