Wall clock time and date at job start Sun Mar 29 2020 22:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46985 * 2 1 4 4 C 1.52999 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47355 * 305.00462 * 4 3 2 6 6 C 1.52997 * 109.47369 * 185.00198 * 4 3 2 7 7 N 1.46901 * 109.47407 * 65.00145 * 4 3 2 8 8 C 1.47952 * 111.00471 * 182.73465 * 7 4 3 9 9 C 1.53938 * 86.18471 * 222.41793 * 8 7 4 10 10 O 1.42899 * 113.73245 * 269.26015 * 9 8 7 11 11 C 1.50696 * 113.73276 * 138.07833 * 9 8 7 12 12 H 1.07998 * 120.00087 * 4.95777 * 11 9 8 13 13 C 1.37872 * 120.00115 * 184.95954 * 11 9 8 14 14 N 1.31521 * 119.99694 * 12.70072 * 13 11 9 15 15 Si 1.86794 * 120.00523 * 192.70693 * 13 11 9 16 16 H 1.48500 * 109.47437 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46928 * 299.99881 * 15 13 11 18 18 H 1.48508 * 109.46917 * 59.99576 * 15 13 11 19 19 C 1.47964 * 110.99847 * 83.37595 * 7 4 3 20 20 H 1.09001 * 109.46791 * 299.99978 * 1 2 3 21 21 H 1.09007 * 109.47373 * 59.99684 * 1 2 3 22 22 H 1.08999 * 109.47221 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47222 * 240.00333 * 2 1 3 24 24 H 1.08997 * 109.47339 * 120.00388 * 2 1 3 25 25 H 1.09001 * 109.47338 * 60.00357 * 3 2 1 26 26 H 1.08998 * 109.47822 * 300.00027 * 3 2 1 27 27 H 1.08994 * 109.47617 * 190.45438 * 6 4 3 28 28 H 1.08999 * 109.47243 * 310.45674 * 6 4 3 29 29 H 1.09007 * 109.47195 * 70.45435 * 6 4 3 30 30 H 1.09006 * 113.75731 * 108.10282 * 8 7 4 31 31 H 1.09001 * 113.75920 * 336.74281 * 8 7 4 32 32 H 0.96695 * 113.99534 * 172.02513 * 10 9 8 33 33 H 0.97004 * 119.99863 * 5.77936 * 14 13 11 34 34 H 1.08997 * 113.76104 * 23.26461 * 19 7 4 35 35 H 1.09005 * 113.75872 * 251.90526 * 19 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 6 4.0799 2.8795 0.1264 7 7 4.0602 0.8570 -1.2543 8 6 5.5377 0.7804 -1.2621 9 6 5.4528 1.2690 -2.7194 10 8 5.3714 0.2113 -3.6768 11 6 6.4897 2.3035 -3.0737 12 1 7.2502 2.5737 -2.3559 13 6 6.4677 2.9051 -4.3140 14 7 5.4151 2.7712 -5.0911 15 14 7.9327 3.9101 -4.8909 16 1 7.6613 4.4464 -6.2488 17 1 8.1619 5.0361 -3.9502 18 1 9.1400 3.0463 -4.9325 19 6 4.0872 1.8668 -2.3355 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.6767 1.9564 0.8900 26 1 1.6767 1.9564 -0.8899 27 1 5.1539 2.9014 -0.0584 28 1 3.5727 3.5103 -0.6036 29 1 3.8765 3.2507 1.1310 30 1 5.9254 -0.2333 -1.1607 31 1 6.0179 1.4899 -0.5882 32 1 5.1959 0.5105 -4.5794 33 1 4.6221 2.3211 -4.7603 34 1 4.1430 2.8941 -1.9757 35 1 3.3158 1.7212 -3.0918 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653387776.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:45 Heat of formation + Delta-G solvation = -47.905491 kcal Electronic energy + Delta-G solvation = -15163.574860 eV Core-core repulsion = 12775.465934 eV Total energy + Delta-G solvation = -2388.108926 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.44908 -37.55081 -35.43801 -34.26700 -32.39745 -28.58347 -27.62832 -27.14353 -25.58836 -22.51649 -21.57509 -20.15961 -19.61625 -17.54209 -16.90122 -16.20493 -15.86874 -15.61262 -15.31878 -14.89708 -14.54717 -14.10512 -13.87171 -13.53128 -13.18300 -12.88682 -12.70054 -12.57017 -12.49544 -12.16524 -12.03728 -11.94310 -11.69599 -11.49349 -11.42195 -10.98394 -10.68151 -10.11009 -9.47419 -8.65824 -6.45785 1.54770 1.60055 1.81238 2.53078 2.93787 3.08133 3.71634 3.74999 4.00360 4.14088 4.15356 4.27626 4.31876 4.36791 4.52087 4.62173 4.69571 4.74078 4.89419 4.91390 4.96752 4.98403 5.06107 5.15871 5.21584 5.35290 5.42153 5.54368 5.59347 5.83035 6.07609 6.28190 6.47604 7.02774 7.31918 8.65353 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.047515 B = 0.008125 C = 0.007818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.150433 B = 3445.490006 C = 3580.649191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.097 4.097 4 C 0.038 3.962 5 H 0.084 0.916 6 C -0.178 4.178 7 N -0.470 5.470 8 C 0.022 3.978 9 C 0.195 3.805 10 O -0.577 6.577 11 C -0.633 4.633 12 H 0.053 0.947 13 C -0.009 4.009 14 N -0.921 5.921 15 Si 1.110 2.890 16 H -0.283 1.283 17 H -0.270 1.270 18 H -0.276 1.276 19 C -0.016 4.016 20 H 0.064 0.936 21 H 0.045 0.955 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.367 0.633 33 H 0.262 0.738 34 H 0.078 0.922 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 -0.352 9.923 11.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.135 4.135 4 C -0.071 4.071 5 H 0.103 0.897 6 C -0.236 4.236 7 N -0.192 5.192 8 C -0.107 4.107 9 C 0.155 3.845 10 O -0.384 6.384 11 C -0.671 4.671 12 H 0.071 0.929 13 C -0.209 4.209 14 N -0.559 5.559 15 Si 0.932 3.068 16 H -0.208 1.208 17 H -0.195 1.195 18 H -0.202 1.202 19 C -0.146 4.146 20 H 0.083 0.917 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.214 0.786 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.957 -0.499 9.141 10.411 hybrid contribution -0.302 0.174 0.724 0.803 sum -5.259 -0.325 9.865 11.184 Atomic orbital electron populations 1.21749 0.95013 1.01878 1.01752 1.21385 0.96084 0.96264 1.01601 1.21497 0.92762 0.97626 1.01574 1.22296 0.96921 0.94243 0.93603 0.89747 1.22410 1.01035 0.97595 1.02584 1.68620 1.10625 1.35377 1.04593 1.23971 0.90227 1.00667 0.95833 1.20381 0.91977 0.85189 0.86925 1.86210 1.94925 1.36450 1.20786 1.22618 1.16077 1.24372 1.04040 0.92918 1.27166 1.03261 0.97000 0.93521 1.70978 1.03778 1.41698 1.39431 0.83021 0.72296 0.75303 0.76161 1.20795 1.19527 1.20168 1.24741 0.99283 0.95921 0.94627 0.91678 0.93597 0.92254 0.93529 0.91849 0.89952 0.93795 0.93292 0.93005 0.89961 0.91027 0.90050 0.78555 0.92626 0.90383 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.91 71.98 0.71 -2.50 16 2 C -0.12 -3.10 5.82 30.59 0.18 -2.92 16 3 C -0.10 -2.71 4.78 30.59 0.15 -2.56 16 4 C 0.04 1.23 2.40 44.91 0.11 1.34 16 5 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 6 C -0.18 -5.53 7.79 71.98 0.56 -4.97 16 7 N -0.47 -19.07 5.64 -885.52 -4.99 -24.06 16 8 C 0.02 0.94 7.13 86.41 0.62 1.56 16 9 C 0.20 9.95 1.08 -10.89 -0.01 9.94 16 10 O -0.58 -31.22 13.46 -148.98 -2.00 -33.22 16 11 C -0.63 -34.49 8.57 25.60 0.22 -34.27 16 12 H 0.05 2.84 7.85 -2.91 -0.02 2.82 16 13 C -0.01 -0.48 5.27 84.65 0.45 -0.04 16 14 N -0.92 -52.34 12.81 21.45 0.27 -52.06 16 15 Si 1.11 48.04 29.92 68.60 2.05 50.10 16 16 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 17 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 18 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 19 C -0.02 -0.75 5.86 86.40 0.51 -0.25 16 20 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 22 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.05 1.52 7.75 -2.39 -0.02 1.50 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.04 1.37 7.93 -2.39 -0.02 1.35 16 27 H 0.05 1.70 5.95 -2.39 -0.01 1.68 16 28 H 0.05 1.72 6.43 -2.39 -0.02 1.70 16 29 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.07 3.11 8.14 -2.38 -0.02 3.10 16 31 H 0.08 3.35 5.98 -2.39 -0.01 3.33 16 32 H 0.37 19.83 6.87 -74.06 -0.51 19.33 16 33 H 0.26 14.92 5.48 -92.71 -0.51 14.41 16 34 H 0.08 3.59 4.93 -2.39 -0.01 3.58 16 35 H 0.05 2.33 7.81 -2.38 -0.02 2.31 16 Total: -1.00 -59.60 273.86 -0.37 -59.97 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.81 Total: 33.95 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 3.48 Total: -34.67 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -4.72 Total: -76.12 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -2.00 Total: -33.22 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.05 Total: 50.10 kcal Total: -59.60 -0.37 -59.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653387776.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.069 kcal (2) G-P(sol) polarization free energy of solvation -59.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds