Wall clock time and date at job start Sun Mar 29 2020 22:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37958 * 120.07738 * 2 1 4 4 C 1.38355 * 120.15648 * 180.02562 * 3 2 1 5 5 C 1.38399 * 120.30191 * 359.97438 * 4 3 2 6 6 C 1.37921 * 120.15258 * 0.02562 * 5 4 3 7 7 C 1.39630 * 120.08257 * 180.28187 * 2 1 3 8 8 C 1.47724 * 120.14656 * 0.02562 * 7 2 1 9 9 O 1.21594 * 120.00192 * 49.84590 * 8 7 2 10 10 N 1.34778 * 119.99858 * 229.84665 * 8 7 2 11 11 C 1.46495 * 119.99988 * 5.97616 * 10 8 7 12 12 C 1.36874 * 119.99989 * 185.98376 * 10 8 7 13 13 H 1.08004 * 119.99822 * 351.47192 * 12 10 8 14 14 C 1.39043 * 119.99997 * 171.47983 * 12 10 8 15 15 N 1.31364 * 120.00304 * 5.60353 * 14 12 10 16 16 Si 1.86802 * 120.00061 * 185.60337 * 14 12 10 17 17 H 1.48504 * 109.47196 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47321 * 119.99713 * 16 14 12 19 19 H 1.48503 * 109.47328 * 239.99766 * 16 14 12 20 20 H 1.09007 * 109.47176 * 85.92386 * 1 2 3 21 21 H 1.09004 * 109.46908 * 205.91727 * 1 2 3 22 22 H 1.08998 * 109.47619 * 325.92136 * 1 2 3 23 23 H 1.08007 * 119.92492 * 0.02562 * 3 2 1 24 24 H 1.08001 * 119.85299 * 180.02562 * 4 3 2 25 25 H 1.08000 * 119.92598 * 180.02562 * 5 4 3 26 26 H 1.07995 * 120.07427 * 180.02562 * 6 5 4 27 27 H 1.08997 * 109.46939 * 5.43456 * 11 10 8 28 28 H 1.08999 * 109.46800 * 125.43533 * 11 10 8 29 29 H 1.08996 * 109.47314 * 245.43393 * 11 10 8 30 30 H 0.96993 * 120.00232 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1938 0.0000 4 6 3.5819 1.1957 -0.0005 5 6 4.2818 0.0018 -0.0005 6 6 3.6034 -1.1990 -0.0005 7 6 2.2068 -1.2082 -0.0059 8 6 1.4733 -2.4905 -0.0128 9 8 0.5823 -2.6769 -0.8190 10 7 1.7917 -3.4537 0.8745 11 6 2.7726 -3.1834 1.9285 12 6 1.1987 -4.6845 0.7907 13 1 0.3792 -4.8435 0.1054 14 6 1.6512 -5.7299 1.5880 15 7 2.5720 -5.5104 2.4988 16 14 0.9496 -7.4466 1.3641 17 1 -0.0664 -7.4288 0.2812 18 1 2.0425 -8.3847 1.0025 19 1 0.3146 -7.8910 2.6307 20 1 -0.3634 0.0731 -1.0251 21 1 -0.3633 -0.9244 0.4492 22 1 -0.3634 0.8511 0.5758 23 1 1.6584 2.1292 0.0004 24 1 4.1182 2.1332 -0.0001 25 1 5.3618 0.0104 -0.0005 26 1 4.1509 -2.1299 -0.0001 27 1 3.0608 -2.1328 1.8958 28 1 2.3335 -3.4097 2.9001 29 1 3.6533 -3.8068 1.7738 30 1 2.8879 -6.2397 3.0547 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049087.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:08 Heat of formation + Delta-G solvation = 1.819741 kcal Electronic energy + Delta-G solvation = -14662.673437 eV Core-core repulsion = 12230.429054 eV Total energy + Delta-G solvation = -2432.244383 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.50942 -37.42444 -34.77113 -32.25989 -31.77596 -30.39306 -26.71773 -26.22572 -24.60092 -22.56666 -21.16469 -19.11000 -17.03754 -16.41079 -15.53916 -15.01789 -14.76483 -14.16741 -13.73332 -13.40762 -13.13032 -12.78814 -12.49117 -11.97109 -11.77946 -11.64911 -11.29865 -11.01746 -10.94320 -10.78273 -10.57136 -10.34258 -10.23567 -9.06244 -8.52293 -8.34231 -8.15943 -7.87567 -6.29430 -3.83252 1.57873 1.77012 3.12753 3.22691 3.30383 3.79281 4.08107 4.30165 4.89651 5.12196 5.23079 5.29142 5.38647 5.59089 5.76378 5.90261 6.06406 6.16532 6.29291 6.34051 6.48188 6.66190 6.78999 6.83532 7.05310 7.10978 7.35303 7.40267 7.52231 8.05238 8.46202 9.15150 9.40616 9.96704 10.64410 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.045808 B = 0.008544 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.094364 B = 3276.541641 C = 3661.821062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.052 4.052 3 C -0.131 4.131 4 C -0.119 4.119 5 C -0.135 4.135 6 C -0.090 4.090 7 C -0.089 4.089 8 C 0.470 3.530 9 O -0.591 6.591 10 N -0.435 5.435 11 C 0.110 3.890 12 C -0.298 4.298 13 H 0.107 0.893 14 C 0.026 3.974 15 N -0.883 5.883 16 Si 0.932 3.068 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.281 1.281 20 H 0.071 0.929 21 H 0.075 0.925 22 H 0.056 0.944 23 H 0.119 0.881 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.126 0.874 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.021 9.038 -0.427 9.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.053 4.053 3 C -0.149 4.149 4 C -0.138 4.138 5 C -0.153 4.153 6 C -0.109 4.109 7 C -0.092 4.092 8 C 0.259 3.741 9 O -0.478 6.478 10 N -0.152 5.152 11 C -0.033 4.033 12 C -0.426 4.426 13 H 0.124 0.876 14 C -0.176 4.176 15 N -0.523 5.523 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.207 1.207 20 H 0.090 0.910 21 H 0.094 0.906 22 H 0.075 0.925 23 H 0.137 0.863 24 H 0.135 0.865 25 H 0.137 0.863 26 H 0.143 0.857 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.682 8.769 -0.634 9.191 hybrid contribution 0.002 -0.869 0.141 0.881 sum 2.684 7.899 -0.493 8.357 Atomic orbital electron populations 1.20764 0.90918 1.02583 1.02361 1.19962 0.96361 0.91792 0.97195 1.20878 0.94200 0.97054 1.02785 1.21093 0.94165 0.97709 1.00786 1.20988 0.99528 0.92387 1.02434 1.21379 0.93326 0.98365 0.97854 1.20183 0.93710 0.94402 1.00922 1.17806 0.87219 0.84038 0.85055 1.90601 1.33830 1.81132 1.42191 1.43672 1.36081 1.10739 1.24688 1.21933 0.93422 0.96073 0.91897 1.19900 1.15781 0.84845 1.22105 0.87563 1.25389 0.96401 1.00323 0.95486 1.70170 1.29248 1.32328 1.20597 0.85754 0.78790 0.81187 0.78385 1.19125 1.20557 1.20657 0.91006 0.90633 0.92507 0.86315 0.86532 0.86273 0.85654 0.95165 0.91198 0.91376 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.15 36.00 0.33 -1.61 16 2 C -0.05 -0.97 5.91 -104.21 -0.62 -1.58 16 3 C -0.13 -2.00 9.70 -39.64 -0.38 -2.38 16 4 C -0.12 -1.67 10.04 -39.48 -0.40 -2.07 16 5 C -0.14 -2.04 10.03 -39.64 -0.40 -2.44 16 6 C -0.09 -1.67 7.56 -39.17 -0.30 -1.96 16 7 C -0.09 -1.88 4.75 -104.97 -0.50 -2.38 16 8 C 0.47 12.06 6.18 -12.38 -0.08 11.98 16 9 O -0.59 -16.84 15.26 5.28 0.08 -16.75 16 10 N -0.44 -11.53 3.02 -123.33 -0.37 -11.90 16 11 C 0.11 2.59 7.76 59.84 0.46 3.06 16 12 C -0.30 -8.41 9.55 -15.00 -0.14 -8.55 16 13 H 0.11 3.13 7.19 -52.48 -0.38 2.75 16 14 C 0.03 0.69 5.46 -17.45 -0.10 0.60 16 15 N -0.88 -23.16 9.47 55.50 0.53 -22.64 16 16 Si 0.93 20.76 29.56 -169.99 -5.02 15.74 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 21 H 0.07 1.56 6.52 -51.93 -0.34 1.22 16 22 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 23 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 24 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 25 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 26 H 0.13 2.32 7.42 -52.49 -0.39 1.93 16 27 H 0.03 0.63 5.04 -51.93 -0.26 0.37 16 28 H 0.07 1.74 7.07 -51.93 -0.37 1.37 16 29 H 0.07 1.65 7.04 -51.93 -0.37 1.28 16 30 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 253.75 15.07 3.82 3.82 Total: -1.00 -30.41 253.75 -6.42 -36.84 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.35 Total: 2.24 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.11 Total: -7.35 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.15 Total: -34.54 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.08 Total: -16.75 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.41 -6.42 -36.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049087.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.656 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds