Wall clock time and date at job start Sun Mar 29 2020 21:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36939 * 120.00116 * 2 1 4 4 H 1.07998 * 120.00287 * 200.37266 * 3 2 1 5 5 C 1.38815 * 119.99848 * 20.36589 * 3 2 1 6 6 N 1.31621 * 119.99882 * 14.98976 * 5 3 2 7 7 Si 1.86797 * 120.00061 * 194.98359 * 5 3 2 8 8 H 1.48500 * 109.47028 * 85.00816 * 7 5 3 9 9 H 1.48505 * 109.47379 * 205.00604 * 7 5 3 10 10 H 1.48500 * 109.47279 * 325.00846 * 7 5 3 11 11 C 1.46496 * 120.00190 * 180.02562 * 2 1 3 12 12 C 1.50698 * 109.47390 * 269.99741 * 11 2 1 13 13 C 1.32570 * 120.00120 * 124.99816 * 12 11 2 14 14 C 1.47807 * 120.00018 * 180.02562 * 13 12 11 15 15 C 1.39535 * 120.14243 * 359.71562 * 14 13 12 16 16 C 1.37972 * 119.85508 * 179.68158 * 15 14 13 17 17 C 1.38342 * 120.14389 * 0.62704 * 16 15 14 18 18 C 1.38342 * 120.28421 * 359.67141 * 17 16 15 19 19 C 1.37981 * 120.14323 * 0.02562 * 18 17 16 20 20 H 1.08999 * 109.47211 * 275.09585 * 1 2 3 21 21 H 1.09002 * 109.47344 * 35.09331 * 1 2 3 22 22 H 1.09004 * 109.47573 * 155.09464 * 1 2 3 23 23 H 0.97004 * 119.99952 * 179.97438 * 6 5 3 24 24 H 1.09002 * 109.47007 * 29.99759 * 11 2 1 25 25 H 1.09004 * 109.47160 * 149.99725 * 11 2 1 26 26 H 1.08001 * 120.00103 * 305.00102 * 12 11 2 27 27 H 1.08001 * 119.99776 * 0.02562 * 13 12 11 28 28 H 1.08000 * 120.06999 * 359.97438 * 15 14 13 29 29 H 1.08004 * 119.92876 * 180.32244 * 16 15 14 30 30 H 1.07995 * 119.86181 * 179.69916 * 17 16 15 31 31 H 1.08001 * 119.93057 * 180.02562 * 18 17 16 32 32 H 1.08000 * 120.07492 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1790 1.2152 -0.3256 5 6 1.5206 2.3505 0.4184 6 7 0.3875 2.2835 1.0847 7 14 2.2824 4.0126 0.0359 8 1 1.8681 4.4462 -1.3227 9 1 1.8223 5.0099 1.0355 10 1 3.7624 3.9033 0.0907 11 6 2.1974 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4200 13 6 2.0552 -2.9038 1.8250 14 6 2.3012 -3.3309 3.2184 15 6 2.9526 -2.4763 4.1086 16 6 3.1732 -2.8784 5.4098 17 6 2.7617 -4.1309 5.8291 18 6 2.1209 -4.9853 4.9499 19 6 1.8886 -4.5929 3.6476 20 1 -0.3633 0.0913 1.0236 21 1 -0.3634 0.8409 -0.5908 22 1 -0.3634 -0.9321 -0.4328 23 1 -0.0518 3.0973 1.3774 24 1 1.6083 -2.0281 -0.5147 25 1 3.1499 -1.1381 -0.5144 26 1 2.9493 -1.0394 2.1083 27 1 1.5549 -3.5688 1.1366 28 1 3.2791 -1.5003 3.7810 29 1 3.6727 -2.2159 6.1012 30 1 2.9411 -4.4429 6.8474 31 1 1.8017 -5.9617 5.2834 32 1 1.3879 -5.2606 2.9622 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045050404.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:41 Heat of formation + Delta-G solvation = 60.163703 kcal Electronic energy + Delta-G solvation = -13642.989239 eV Core-core repulsion = 11376.419413 eV Total energy + Delta-G solvation = -2266.569826 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.87941 -36.02522 -33.72014 -31.28884 -30.71309 -29.26132 -26.07243 -25.38707 -22.73560 -22.05542 -20.68714 -18.76406 -16.78482 -16.67909 -15.19754 -14.76185 -14.59234 -13.79270 -13.61428 -13.28525 -13.01169 -12.66953 -12.59653 -11.94976 -11.37372 -11.21546 -10.93608 -10.74555 -10.64962 -10.51547 -10.34346 -10.00368 -9.84580 -9.65215 -8.72794 -8.57388 -7.62351 -6.82821 -5.75164 -3.18154 1.31239 1.63742 3.02755 3.38001 3.44048 3.45070 4.23143 4.50249 5.05546 5.12824 5.17702 5.34648 5.42876 5.59929 5.71235 5.73410 5.80438 6.13860 6.21207 6.30530 6.40129 6.58924 6.67613 6.74610 6.75726 6.82034 7.19480 7.30630 7.37465 7.42770 7.72298 7.79507 8.36139 9.20352 9.83781 10.32033 11.29608 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.039666 B = 0.006199 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.733286 B = 4515.490455 C = 4852.928244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.596 5.596 3 C -0.257 4.257 4 H 0.071 0.929 5 C 0.001 3.999 6 N -0.905 5.905 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.167 3.833 12 C -0.104 4.104 13 C -0.179 4.179 14 C -0.026 4.026 15 C -0.123 4.123 16 C -0.116 4.116 17 C -0.141 4.141 18 C -0.121 4.121 19 C -0.126 4.126 20 H 0.029 0.971 21 H 0.044 0.956 22 H -0.001 1.001 23 H 0.253 0.747 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.426 -11.361 4.916 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.318 5.318 3 C -0.386 4.386 4 H 0.089 0.911 5 C -0.198 4.198 6 N -0.549 5.549 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.041 3.959 12 C -0.125 4.125 13 C -0.199 4.199 14 C -0.026 4.026 15 C -0.141 4.141 16 C -0.134 4.134 17 C -0.159 4.159 18 C -0.139 4.139 19 C -0.144 4.144 20 H 0.048 0.952 21 H 0.063 0.937 22 H 0.017 0.983 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.144 0.856 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.292 -11.182 4.941 12.660 hybrid contribution 0.241 0.995 0.129 1.032 sum 3.533 -10.187 5.070 11.915 Atomic orbital electron populations 1.20821 0.82225 0.95575 0.99553 1.44097 1.02040 1.00421 1.85193 1.19280 0.97262 0.84830 1.37267 0.91078 1.25020 0.97879 0.98507 0.98370 1.70100 1.18751 1.26938 1.39147 0.86249 0.78659 0.83832 0.77663 1.21375 1.21733 1.20493 1.20091 0.96337 0.88654 0.90849 1.24734 0.92858 0.93689 1.01254 1.21446 1.06966 0.98183 0.93297 1.19235 0.95846 0.93434 0.94090 1.21421 0.99338 0.99905 0.93418 1.21054 1.00103 0.96285 0.95947 1.21063 1.00723 0.94718 0.99371 1.21001 0.99600 0.99401 0.93867 1.21215 1.01146 0.96021 0.96001 0.95225 0.93697 0.98260 0.93655 0.93500 0.92500 0.87409 0.87177 0.85629 0.86410 0.86719 0.86586 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.10 9.02 59.84 0.54 4.64 16 2 N -0.60 -15.16 2.91 -182.51 -0.53 -15.69 16 3 C -0.26 -7.06 9.68 -15.06 -0.15 -7.21 16 4 H 0.07 1.89 7.86 -52.49 -0.41 1.48 16 5 C 0.00 0.02 5.06 -17.43 -0.09 -0.06 16 6 N -0.90 -26.57 10.67 55.49 0.59 -25.98 16 7 Si 0.91 21.82 29.58 -169.99 -5.03 16.79 16 8 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.17 3.46 6.15 -5.20 -0.03 3.43 16 12 C -0.10 -2.03 9.27 -36.22 -0.34 -2.37 16 13 C -0.18 -3.11 9.52 -37.58 -0.36 -3.47 16 14 C -0.03 -0.43 5.87 -105.02 -0.62 -1.04 16 15 C -0.12 -2.01 9.40 -39.20 -0.37 -2.37 16 16 C -0.12 -1.64 10.03 -39.64 -0.40 -2.03 16 17 C -0.14 -1.81 10.04 -39.50 -0.40 -2.20 16 18 C -0.12 -1.55 10.03 -39.64 -0.40 -1.95 16 19 C -0.13 -1.80 9.79 -39.19 -0.38 -2.19 16 20 H 0.03 0.81 7.40 -51.93 -0.38 0.42 16 21 H 0.04 1.20 7.21 -51.93 -0.37 0.82 16 22 H 0.00 -0.03 7.84 -51.93 -0.41 -0.43 16 23 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.05 0.88 7.53 -51.93 -0.39 0.49 16 25 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 26 H 0.11 2.24 6.04 -52.49 -0.32 1.92 16 27 H 0.11 1.73 7.87 -52.49 -0.41 1.32 16 28 H 0.13 2.10 6.17 -52.49 -0.32 1.78 16 29 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 30 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 274.81 15.07 4.14 4.14 Total: -1.00 -29.89 274.81 -8.07 -37.96 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.27 Total: -0.40 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -2.98 Total: -16.82 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.06 Total: -41.67 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.89 -8.07 -37.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045050404.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.123 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds