Wall clock time and date at job start Sun Mar 29 2020 21:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48494 * 109.47370 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.46920 * 30.00186 * 3 2 1 6 6 H 1.48503 * 109.47075 * 149.99583 * 3 2 1 7 7 C 1.37877 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00404 * 359.97438 * 7 2 1 9 9 S 1.76203 * 119.99706 * 180.02562 * 7 2 1 10 10 O 1.42104 * 106.40146 * 66.45646 * 9 7 2 11 11 O 1.42095 * 106.40229 * 293.53903 * 9 7 2 12 12 N 1.65602 * 107.21635 * 179.97438 * 9 7 2 13 13 C 1.40714 * 119.99435 * 65.28043 * 12 9 7 14 14 C 1.41782 * 128.05369 * 314.39500 * 13 12 9 15 15 N 1.30195 * 106.39906 * 179.90088 * 14 13 12 16 16 O 1.20893 * 111.73273 * 0.39357 * 15 14 13 17 17 C 1.34365 * 111.61555 * 359.74529 * 16 15 14 18 18 H 0.96999 * 120.00275 * 0.02562 * 1 2 3 19 19 H 0.97001 * 119.99942 * 244.99525 * 12 9 7 20 20 H 1.08003 * 126.80209 * 0.02562 * 14 13 12 21 21 H 1.08003 * 126.82042 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7665 -1.1940 0.0001 10 8 4.1673 -0.6503 1.2504 11 8 4.1683 -0.6488 -1.2490 12 7 4.2567 -2.7759 0.0000 13 6 3.9786 -3.5984 -1.1073 14 6 2.7575 -3.7259 -1.8165 15 7 2.9700 -4.5966 -2.7608 16 8 4.1031 -5.0174 -2.7350 17 6 4.8157 -4.4596 -1.7418 18 1 -0.4850 0.8400 -0.0004 19 1 4.7391 -3.1342 0.7614 20 1 1.8344 -3.2027 -1.6147 21 1 5.8490 -4.6565 -1.4969 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061685533.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:13 Heat of formation + Delta-G solvation = -14.116696 kcal Electronic energy + Delta-G solvation = -12958.179547 eV Core-core repulsion = 10350.907438 eV Total energy + Delta-G solvation = -2607.272109 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 218.019 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.57928 -36.00293 -35.53973 -34.65415 -33.19059 -32.24798 -30.07403 -26.60301 -22.95037 -21.99367 -19.30804 -18.21831 -17.59053 -17.12678 -16.73921 -16.38984 -15.21460 -14.28400 -13.85530 -13.55805 -13.05378 -12.89231 -12.05978 -11.55416 -11.49837 -10.99255 -10.82840 -10.70691 -10.65611 -9.99793 -9.77818 -9.31972 -9.16107 -8.49425 -6.92103 -5.50061 1.64073 1.83834 2.61181 2.99889 3.10603 3.17995 3.40840 3.85617 4.10301 4.47488 4.82834 4.94637 5.11862 5.35770 5.66821 5.98039 6.24327 6.43381 7.33293 7.39040 8.03511 8.52760 8.56489 10.19228 Molecular weight = 218.02amu Principal moments of inertia in cm(-1) A = 0.045948 B = 0.012388 C = 0.010856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.243252 B = 2259.646687 C = 2578.560424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.155 3.845 3 Si 0.802 3.198 4 H -0.245 1.245 5 H -0.253 1.253 6 H -0.221 1.221 7 C -1.017 5.017 8 H 0.126 0.874 9 S 2.667 3.333 10 O -0.996 6.996 11 O -0.996 6.996 12 N -1.033 6.033 13 C 0.065 3.935 14 C -0.012 4.012 15 N -0.357 5.357 16 O 0.097 5.903 17 C -0.095 4.095 18 H 0.283 0.717 19 H 0.418 0.582 20 H 0.209 0.791 21 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.097 -6.168 -0.700 9.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.065 4.065 3 Si 0.622 3.378 4 H -0.168 1.168 5 H -0.177 1.177 6 H -0.143 1.143 7 C -1.151 5.151 8 H 0.144 0.856 9 S 2.769 3.231 10 O -0.986 6.986 11 O -0.986 6.986 12 N -0.781 5.781 13 C -0.036 4.036 14 C -0.193 4.193 15 N -0.061 5.061 16 O 0.034 5.966 17 C -0.181 4.181 18 H 0.094 0.906 19 H 0.253 0.747 20 H 0.226 0.774 21 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.675 -5.782 -1.797 9.012 hybrid contribution 0.056 0.827 1.188 1.448 sum 6.731 -4.955 -0.609 8.380 Atomic orbital electron populations 1.69964 1.06519 1.29344 1.38607 1.24388 0.94818 0.98776 0.88544 0.87847 0.83490 0.84486 0.81981 1.16842 1.17691 1.14331 1.30337 1.14726 1.02433 1.67640 0.85623 1.01851 0.77884 0.69780 0.73569 1.93510 1.85672 1.74580 1.44852 1.93445 1.85044 1.74830 1.45248 1.53107 1.72321 1.29852 1.22856 1.18288 0.92941 0.98686 0.93726 1.25626 1.00831 0.98610 0.94233 1.73825 0.97833 1.13644 1.20826 1.84823 1.16998 1.52049 1.42760 1.25549 0.99500 1.01652 0.91395 0.90624 0.74745 0.77401 0.76646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.58 13.96 55.43 0.77 -21.81 14 2 C 0.16 4.27 5.47 -17.82 -0.10 4.17 14 3 Si 0.80 19.85 26.54 -169.99 -4.51 15.34 14 4 H -0.24 -5.96 7.11 56.52 0.40 -5.56 14 5 H -0.25 -5.75 7.11 56.52 0.40 -5.35 14 6 H -0.22 -5.55 5.61 56.52 0.32 -5.24 14 7 C -1.02 -26.77 9.16 30.60 0.28 -26.48 14 8 H 0.13 3.26 6.77 -52.49 -0.36 2.90 14 9 S 2.67 63.58 4.15 -107.50 -0.45 63.14 14 10 O -1.00 -25.29 16.02 -57.17 -0.92 -26.20 14 11 O -1.00 -25.88 16.55 -57.17 -0.95 -26.83 14 12 N -1.03 -18.79 5.94 32.61 0.19 -18.60 14 13 C 0.06 1.14 6.68 -83.29 -0.56 0.59 14 14 C -0.01 -0.23 11.48 -16.89 -0.19 -0.42 14 15 N -0.36 -6.43 12.06 30.50 0.37 -6.06 14 16 O 0.10 1.50 11.21 16.31 0.18 1.68 14 17 C -0.09 -1.31 12.33 29.87 0.37 -0.94 14 18 H 0.28 7.13 8.31 -40.82 -0.34 6.79 14 19 H 0.42 6.01 8.96 -34.47 -0.31 5.70 14 20 H 0.21 4.14 6.16 -52.48 -0.32 3.81 14 21 H 0.22 1.88 8.06 -52.48 -0.42 1.46 14 LS Contribution 209.61 15.07 3.16 3.16 Total: -1.00 -31.78 209.61 -2.97 -34.75 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -0.63 Total: 4.51 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -0.20 Total: -23.09 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 1.34 Total: -46.46 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -1.68 Total: -51.35 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.51 Total: 15.34 kcal Atomic # 16 Polarization: 63.58 SS G_CDS: -0.45 Total: 63.14 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -31.78 -2.97 -34.75 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061685533.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.636 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds