Wall clock time and date at job start Sun Mar 29 2020 21:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.68531 * 2 1 4 4 C 1.52981 * 109.65429 * 239.66446 * 2 1 3 5 5 C 1.50590 * 110.49539 * 189.01413 * 4 2 1 6 6 C 1.38448 * 118.95047 * 200.33400 * 5 4 2 7 7 C 1.38169 * 120.31819 * 180.43868 * 6 5 4 8 8 C 1.38364 * 120.18997 * 0.02562 * 7 6 5 9 9 C 1.37965 * 119.92632 * 359.89588 * 8 7 6 10 10 C 1.38768 * 121.49517 * 20.60716 * 5 4 2 11 11 N 1.39529 * 120.86128 * 359.41848 * 10 5 4 12 12 C 1.36846 * 120.52780 * 193.71775 * 11 10 5 13 13 H 1.08001 * 120.00095 * 27.54651 * 12 11 10 14 14 C 1.38797 * 120.00372 * 207.54159 * 12 11 10 15 15 N 1.31592 * 119.99652 * 12.16532 * 14 12 11 16 16 Si 1.86797 * 120.00102 * 192.15825 * 14 12 11 17 17 H 1.48495 * 109.47219 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47245 * 120.00474 * 16 14 12 19 19 H 1.48506 * 109.47107 * 240.00146 * 16 14 12 20 20 C 1.46913 * 118.94913 * 13.70110 * 11 10 5 21 21 H 1.09005 * 109.46915 * 299.67634 * 1 2 3 22 22 H 1.08992 * 109.47443 * 59.67193 * 1 2 3 23 23 H 1.08998 * 109.47562 * 179.68145 * 1 2 3 24 24 H 1.08997 * 109.29169 * 68.69750 * 4 2 1 25 25 H 1.09000 * 109.28392 * 309.32618 * 4 2 1 26 26 H 1.08004 * 119.84139 * 0.49417 * 6 5 4 27 27 H 1.07998 * 119.90506 * 180.02562 * 7 6 5 28 28 H 1.08001 * 120.03405 * 179.90857 * 8 7 6 29 29 H 1.08000 * 119.99337 * 180.02562 * 9 8 7 30 30 H 0.96995 * 119.99821 * 184.97780 * 15 14 12 31 31 H 1.08997 * 109.79378 * 74.78078 * 20 11 10 32 32 H 1.09000 * 109.79123 * 195.57063 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0445 -0.7276 -1.2434 5 6 3.5338 -0.9325 -1.1559 6 6 4.2467 -1.1727 -2.3182 7 6 5.6128 -1.3736 -2.2697 8 6 6.2789 -1.3367 -1.0574 9 6 5.5776 -1.0965 0.1062 10 6 4.2011 -0.8912 0.0601 11 7 3.5107 -0.6449 1.2473 12 6 4.1890 -0.3288 2.3931 13 1 5.1509 0.1588 2.3341 14 6 3.6408 -0.6347 3.6310 15 7 2.5975 -1.4329 3.7093 16 14 4.3839 0.0865 5.1856 17 1 5.5406 0.9465 4.8284 18 1 3.3618 0.9004 5.8914 19 1 4.8398 -1.0136 6.0728 20 6 2.0441 -0.7300 1.2478 21 1 -0.3633 0.5088 0.8929 22 1 -0.3634 0.5189 -0.8869 23 1 -0.3634 -1.0276 -0.0057 24 1 1.8137 -0.1352 -2.1287 25 1 1.5516 -1.6965 -1.3233 26 1 3.7326 -1.2022 -3.2676 27 1 6.1624 -1.5600 -3.1805 28 1 7.3465 -1.4956 -1.0222 29 1 6.0964 -1.0670 1.0529 30 1 2.1700 -1.5895 4.5658 31 1 1.7350 -1.7748 1.2178 32 1 1.6470 -0.2533 2.1440 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071025461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:15 Heat of formation + Delta-G solvation = 7.348980 kcal Electronic energy + Delta-G solvation = -14657.130399 eV Core-core repulsion = 12388.270355 eV Total energy + Delta-G solvation = -2268.860044 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.81752 -37.62451 -35.96855 -33.57802 -31.94883 -30.15884 -27.91657 -27.15535 -24.93052 -22.76700 -22.51116 -20.15625 -19.06584 -17.91632 -16.53036 -16.43838 -16.14141 -15.25621 -14.91544 -14.74171 -14.28781 -14.14690 -13.85682 -13.33469 -13.17003 -12.93176 -12.79625 -12.70524 -12.43873 -12.14177 -11.94781 -11.65300 -11.31209 -11.19448 -11.01262 -10.32618 -9.34366 -8.47156 -8.11516 -5.74209 0.81807 1.01377 1.38805 1.43057 1.51826 2.27039 2.93145 3.24348 3.32218 3.95445 4.14315 4.15399 4.36419 4.47107 4.64084 4.68399 4.81985 4.84142 4.92622 5.01337 5.06802 5.16604 5.27259 5.31230 5.35771 5.42748 5.53002 5.57616 5.83098 5.96752 6.02090 6.11524 6.52217 6.79455 7.48264 7.83312 8.75384 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.026020 B = 0.012251 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.845327 B = 2285.004184 C = 3212.535805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.112 4.112 3 H 0.054 0.946 4 C -0.050 4.050 5 C -0.212 4.212 6 C -0.070 4.070 7 C -0.223 4.223 8 C -0.079 4.079 9 C -0.235 4.235 10 C 0.186 3.814 11 N -0.484 5.484 12 C -0.316 4.316 13 H 0.081 0.919 14 C -0.020 4.020 15 N -0.909 5.909 16 Si 0.987 3.013 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.281 1.281 20 C 0.165 3.835 21 H 0.051 0.949 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.129 0.871 29 H 0.096 0.904 30 H 0.267 0.733 31 H 0.021 0.979 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 2.110 -7.872 8.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.132 4.132 3 H 0.073 0.927 4 C -0.087 4.087 5 C -0.218 4.218 6 C -0.089 4.089 7 C -0.245 4.245 8 C -0.098 4.098 9 C -0.259 4.259 10 C 0.074 3.926 11 N -0.175 5.175 12 C -0.444 4.444 13 H 0.098 0.902 14 C -0.220 4.220 15 N -0.548 5.548 16 Si 0.811 3.189 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.207 1.207 20 C 0.041 3.959 21 H 0.070 0.930 22 H 0.097 0.903 23 H 0.076 0.924 24 H 0.106 0.894 25 H 0.082 0.918 26 H 0.156 0.844 27 H 0.153 0.847 28 H 0.146 0.854 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.509 2.035 -7.427 7.847 hybrid contribution 0.419 0.076 1.348 1.413 sum -1.090 2.112 -6.080 6.527 Atomic orbital electron populations 1.21641 0.92469 1.02219 1.02334 1.21581 0.97328 0.98764 0.95513 0.92715 1.20244 0.90686 1.00030 0.97693 1.19507 0.96744 1.13674 0.91835 1.20962 0.94269 0.96955 0.96688 1.20854 0.94719 1.11321 0.97560 1.20991 0.99423 0.97271 0.92077 1.20721 0.93608 1.12930 0.98610 1.18349 0.92311 0.94565 0.87374 1.42797 1.04373 1.64646 1.05666 1.19706 1.05460 1.35190 0.84086 0.90177 1.26137 0.98136 0.96012 1.01732 1.70179 1.23480 1.34392 1.26764 0.84956 0.78434 0.77903 0.77633 1.18858 1.19952 1.20685 1.21223 0.80430 0.97354 0.96846 0.93028 0.90262 0.92414 0.89371 0.91791 0.84450 0.84739 0.85356 0.88632 0.92335 0.96102 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.20 71.98 0.66 -3.17 16 2 C -0.11 -4.30 2.90 -10.66 -0.03 -4.33 16 3 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.05 -1.75 5.09 29.81 0.15 -1.60 16 5 C -0.21 -8.79 5.76 -19.72 -0.11 -8.90 16 6 C -0.07 -2.47 9.66 22.30 0.22 -2.25 16 7 C -0.22 -7.67 10.04 22.28 0.22 -7.44 16 8 C -0.08 -3.02 10.05 22.23 0.22 -2.80 16 9 C -0.23 -10.99 9.19 22.45 0.21 -10.78 16 10 C 0.19 9.14 6.32 38.29 0.24 9.38 16 11 N -0.48 -25.79 2.98 -510.00 -1.52 -27.31 16 12 C -0.32 -17.60 8.63 84.04 0.73 -16.87 16 13 H 0.08 4.45 6.91 -2.91 -0.02 4.43 16 14 C -0.02 -1.10 5.03 84.86 0.43 -0.67 16 15 N -0.91 -51.01 11.03 21.65 0.24 -50.78 16 16 Si 0.99 42.80 29.57 68.60 2.03 44.83 16 17 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 C 0.17 8.07 4.24 86.45 0.37 8.43 16 21 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 22 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.09 2.56 8.12 -2.39 -0.02 2.54 16 25 H 0.06 2.17 8.12 -2.39 -0.02 2.15 16 26 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 27 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 28 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 29 H 0.10 4.72 6.61 -2.91 -0.02 4.70 16 30 H 0.27 14.11 8.32 -92.71 -0.77 13.34 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 3.38 6.41 -2.39 -0.02 3.36 16 Total: -1.00 -61.67 260.40 5.13 -56.54 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 1.09 Total: 17.73 kcal Atomic # 6 Polarization: -44.30 SS G_CDS: 3.30 Total: -41.00 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -1.28 Total: -78.09 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -61.67 5.13 -56.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071025461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.886 kcal (2) G-P(sol) polarization free energy of solvation -61.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds